Skip to main content
Canadian Respiratory Journal logoLink to Canadian Respiratory Journal
. 2026 Jul 10;2026:8872950. doi: 10.1155/carj/8872950

Pathogen Profile of Pediatric Community‐Acquired Pneumonia in Wuhan, 2023: A BALF‐Based Study

Zhongjian Wang 1, Yi Gan 1, Miao Wang 1, Yunyang Hu 1, Yabin Wu 1, Ying Cheng 1, Tao Huang 1, Danna Tu 1, Junhua Shu 1,✉, Xiaoqin Zhou 1,✉
Editor: Lipi Buch
PMCID: PMC13353079  PMID: 42429635

Abstract

Objective

To analyze the distribution characteristics of pathogens in the bronchoalveolar lavage fluid of children with community‐acquired pneumonia.

Methods

We retrospectively analyzed the etiological data of 1526 children diagnosed and treated at the Maternal and Child Health Hospital of Hubei Province from January 1, 2023, to December 31, 2023.

Results

Pathogens were detected in 1524 of the 1526 children (99.9%). The five most frequently identified pathogens were Mycoplasma pneumoniae, rhinovirus, Epstein‒Barr virus, Streptococcus pneumoniae, and human bocavirus. The overall mixed infection rate was 62%. Epstein‒Barr virus, rhinovirus, Streptococcus pneumoniae, human bocavirus, and Haemophilus influenzae were the most common co‐infections of Mycoplasma pneumoniae. Staphylococcus aureus and Pneumocystis jirovecii infections were more common in males than in females. Human bocavirus, parainfluenza virus, respiratory syncytial virus, Cytomegalovirus, Pneumocystis jirovecii, and WU polyomavirus were more prevalent in infants and young children, and Epstein‒Barr virus was more common in preschool‐aged and school‐aged children. More than half (51.6%) of the Mycoplasma pneumoniae infections occurred in autumn. Mycobacterium tuberculosis complex, human parainfluenza virus, and Cytomegalovirus were more common in spring and summer, and influenza B virus and adenovirus were more common in autumn and winter. Respiratory syncytial virus, influenza A virus, and Fusobacterium nucleatum were more common in winter and spring. Enteroviruses were more prevalent in summer and autumn.

Conclusion

The positive rate of pathogen detection in bronchoalveolar lavage fluid was extremely high. Most patients presented with mixed infections, and the distribution of some pathogens varied by sex, age, and season.

Keywords: bronchoalveolar lavage fluid, children, community-acquired pneumonia, Mycoplasma pneumoniae, pathogen

1. Introduction

Pneumonia is one of the leading causes of death in children under 5 years of age, and the vast majority of these cases are community‐acquired pneumonia (CAP) [1]. According to statistics, lower respiratory tract infections caused 652,572 deaths in children under 5 years of age worldwide in 2016 [2]. Following the COVID‐19 outbreak, pneumonia cases surged, creating a substantial global disease burden [3]. To control the pandemic, a series of nonpharmaceutical interventions (NPIs)—including social distancing, school closures, mask‐wearing, travel restrictions, and improved personal hygiene—were implemented worldwide, significantly reducing the transmission of 2019‐nCoV [4]. While these NPIs are effective in controlling the transmission of 2019‐nCoV, they also affect the seasonal transmission patterns of other respiratory viruses, such as the influenza virus, respiratory syncytial virus (RSV), human rhinovirus (HRV), human metapneumovirus (HMPV), and adenovirus (ADV) [5–7].

The change in the pathogen spectrum of respiratory tract infections in children after the outbreak of the 2019 novel coronavirus has attracted much attention. Liu et al. studied 7107 patients with lower respiratory tract infections. Compared with those in 2019, the infection rates of RSV, ADV, HMPV and influenza viruses decreased significantly in 2020, whereas HRV infection rates increased significantly. After September 2020, human parainfluenza virus (HPIV) infection resumed. In addition, there were significantly fewer co‐infections in 2020 than in 2019 [6]. Principi et al. suggested that postepidemic pathogen prevalence results from the interplay of various factors—including pathogen variation, host immunity, and mutual pathogen interference—each capable of altering the traditional epidemiology of a single virus [7]. Strengthening the surveillance of pathogen prevalence and vaccination is recommended.

Bronchoalveolar lavage fluid (BALF) is directly collected from the lesion site. Compared to blood or sputum culture, BALF more accurately reflects pulmonary etiology and guides antibiotic use [8–10]. To better understand the changes in the respiratory pathogen spectrum among children in the postpandemic era, we analyzed the distribution of BALF pathogens from children with CAP at the Maternal and Child Health Hospital of Hubei Province in 2023. This study aims to provide a basis for accurate diagnosis and rational drug use, as well as a scientific foundation for targeted prevention and control strategies.

2. Materials and Methods

2.1. Patients

The clinical data of 1526 children with CAP who underwent bronchoscopy and bronchoalveolar lavage at Maternal and Child Health Hospital of Hubei Province from January 1, 2023, to December 31, 2023, were retrospectively analyzed. The inclusion criteria were as follows: (1) had a clinical diagnosis of pediatric CAP, (2) were aged 28 days to 15 years, (3) had undergone bronchoscopy and bronchoalveolar lavage with the consent of their guardians, and (4) had complete clinical data. The exclusion criteria were as follows: (1) patients with contraindications to bronchoscopy, (2) patients with contraindications to anesthesia, (3) patients with serious underlying diseases, (4) patients whose guardians refused bronchoscopy, (5) patients with hospital‐acquired pneumonia, and (6) patients whose clinical data were incomplete. The indications for bronchoscopy in this study included the following: (1) recurrent or persistent wheezing; (2) unexplained chronic cough; (3) recurrent respiratory tract infection; and (4) abnormal chest imaging: (1) dysplasia and/or malformation of the trachea, bronchus, and lung; (2) atelectasis; (3) consolidation of the lung; (4) pulmonary mass lesions; (5) diffuse lung disease; and (6) etiological diagnosis and treatment of pulmonary infectious diseases. This study was approved by the hospital medical ethics committee (No. 2024‐107‐01).

2.2. Methods

Clinical information—including name, sex, age, imaging results, etiological findings, bronchoscopic findings, diagnosis, treatment, and complications—was collected via the hospital’s electronic medical record system. The contraindications for bronchoscopy included the following: (1) severe cardiopulmonary dysfunction; (2) severe arrhythmia; (3) persistent high fever; (4) active hemoptysis, severe hemorrhagic diseases, coagulopathy, or severe pulmonary hypertension; and (5) severe malnutrition in patients who could not tolerate surgery.

Reagents and instruments: Respiratory pathogenic microorganism multiple joint detection kit (Jinqi Rui Company, product number: KS608‐100HXD96), next‐generation sequencer (Jinqi Rui Company, product number: MiniSeqDx‐CN), etc.

Targeted high‐throughput next‐generation sequencing (tNGS): All patients underwent bronchoscopy, and BALF samples were collected. The collected samples were sent to Golden Med Medical Center for tNGS detection (multiplex PCR combined with next‐generation sequencing technology). After the BALF samples were thoroughly mixed, 1300 μL was centrifuged at 12,000 r/min for 5 min. After centrifugation, the supernatant was removed, 500 μL of the sample was retained, and the mixture was blown. A 500 μL sample was put into the bead mill tube of the extraction kit, and 50 μL of SDS was added to the wall‐breaking instrument. After the wall‐breaking treatment, the samples were centrifuged at 12,000 rpm for 5 min, and 400 μL of the supernatant was used for nucleic acid extraction. Ultramultiplex PCR was used to amplify and enrich the target sequence to form short fragments of nucleic acid without interruption. After purification, the products were added to the adapter, and a second round of PCR amplification was performed to construct the library. The library quality was controlled by an ultramicro spectrophotometer, and the libraries were sequenced. After the sequencing was completed, the data were analyzed to form the final report.

The sequencing depth of tNGS for samples in this study ranged from 500x to 1000x. Pathogen positivity was determined based on specific sequence counts and clinical context, with the following criteria: Definitive positive: ≥ 100 specific sequences from nonsingle‐target regions. Indeterminate (10–100 specific sequences): Requires verification via auxiliary methods (e.g., real‐time quantitative PCR) or repeat sampling. Low‐confidence (≤ 10 specific sequences): Requires repeat testing; a positive repeat result is prioritized for interpretation, while a negative repeat is classified as nonpositive. Adjusted thresholds: For certain viruses or bacteria, lower sequence count thresholds may apply, but only after comprehensive evaluation of clinical context and detection consistency. The detection range of tNGS in this study included 198 pathogens of the respiratory tract, including 80 bacteria, 79 viruses, 32 fungi, and seven other pathogens (including Mycoplasma pneumoniae [MP] and Chlamydia pneumoniae). The interpretation of tNGS results requires integrative analysis incorporating the pediatric patient’s clinical symptoms, laboratory test results, radiological findings, and treatment responses.

2.3. Statistical Analysis

SPSS 29 software was used; the count data are expressed as n (%), and the chi‐square test or Fisher’s exact probability test was used for comparisons between groups. p < 0.05 was considered statistically significant.

3. Results

3.1. Overall Distribution of Pathogens

Pathogens were detected in 99.9% (1524/1526) of patients. The 20 most common pathogens are shown in Figure 1. Figure 1 illustrates the pathogen distribution characteristics via two key panels: The left panel displays the top 20 pathogens ranked by the number of positive patients, and the right panel uses a pie chart to depict the composition of single infections and mixed infections involving varying numbers of pathogens within the study cohort. The five most common pathogens were MP (93.0%, 1419/1526), HRV (15.5%, 237/1526), Epstein–Barr virus (EBV) (14.5%, 221/1526), Streptococcus pneumoniae (SP) (14.4%, 219/1526), and human bocavirus (HBoV) (9.8%, 149/1526). SP, Haemophilus influenzae (HI), Bordetella pertussis (BP), Tropheryma whipplei (TW) and Staphylococcus aureus (SA) were the five most common bacteria. The five most common viruses were HRV, EBV, HBoV, HPIV, and RSV. Of all patients, 575 (38%) had a single pathogen, 456 (30%) had two pathogens, 252 (16%) had three, and 241 (16%) had four or more (Figure 1), yielding a mixed infection rate of 62%. A high prevalence of co‐infections stands as a distinctive feature of this cohort, with MP‐containing combinations being the most frequently observed among co‐infection cases. The most common co‐infections were MP with EBV (13.6%, 208/1526), MP with HRV (13.5%, 206/1526), MP with SP (12.5%, 191/1526), MP with HBoV (8.9%, 136/1526), and MP with HI (7.4%, 113/1526).

FIGURE 1.

FIGURE 1

The number of patients infected with the top 20 common pathogens and the mixed infection status of different pathogens. Note: MP: Mycoplasma pneumoniae; HRV: human rhinovirus; EBV: Epstein–Barr virus; SP: Streptococcus pneumoniae; HBoV: human bocavirus; HI: Haemophilus influenzae; HPIV: human parainfluenza virus; RSV: respiratory syncytial virus; ADV: adenovirus; HMPV: human metapneumovirus; BP: Bordetella pertussis; TW: Tropheryma whipplei; SA: Staphylococcus aureus; EV: Enterovirus; CoV: coronavirus; PJ: Pneumocystis jirovecii; Flu‐A: influenza A virus; CMV: Cytomegalovirus; CA: Candida albicans; MC: Moraxella catarrhalis.

3.2. Distribution of Pathogens by Sex

There were 745 males and 781 females. Table 1 shows the comparison of the distributions of some pathogens in different sexes. SA and Pneumocystis jirovecii (PJ) infections were more common in males than in females (p < 0.05). No significant sex differences were observed for other pathogens.

TABLE 1.

Comparison of the distribution of some pathogens in different sexes (n, %).

Groups MP HRV EBV SP HBoV SA PJ
Male (n = 745) 687 (92.2) 127 (17.0) 109 (14.6) 113 (15.2) 76 (10.2) 33 (4.4) 28 (3.8)
Female (n = 781) 732 (93.7) 110 (14.1) 112 (14.3) 106 (13.6) 73 (9.3) 15 (1.9) 14 (1.8)
χ 2 1.336 2.551 0.026 0.790 0.316 7.878 5.505
p 0.248 0.110 0.872 0.374 0.574 0.005 0.019

Note: HRV, human rhinovirus; HBoV, human bocavirus.

Abbreviations: EBV, Epstein–Barr virus; MP, Mycoplasma pneumoniae; PJ, Pneumocystis jirovecii; SA, Staphylococcus aureus; SP, Streptococcus pneumoniae.

3.3. Distribution of Pathogens by Age

Patients were categorized into four age groups: infants (28 d–1 y, n = 56, 3.7%), toddlers (1–3 y, n = 239, 15.7%), preschool children (4–6 y, n = 564, 37%), and school‐aged children (7–15 y, n = 667, 43.7%). The distribution of the top 20 common pathogens in different age groups is shown in Figure 2. As can be observed from Figure 2, the detection rates of MP and EBV increase significantly with age; while pathogens such as RSV and Cytomegalovirus (CMV) show relatively higher detection rates in the infant and toddler groups. Table 2 shows the comparison of the distributions of some pathogens in different age groups. HBoV, HPIV, RSV, CMV, PJ and WU polyomavirus were more common in infants and young children (p < 0.05). EBV infection was more common in preschool‐aged and school‐aged children (p < 0.05).

FIGURE 2.

FIGURE 2

Distribution of the top 20 common pathogens in different age groups. Note: MP: Mycoplasma pneumoniae; HRV: human rhinovirus; EBV: Epstein–Barr virus; SP: Streptococcus pneumoniae; HBoV: human bocavirus; HI: Haemophilus influenzae; HPIV: human parainfluenza virus; RSV: respiratory syncytial virus; ADV: adenovirus; HMPV: human metapneumovirus; BP: Bordetella pertussis; TW: Tropheryma whipplei; SA: Staphylococcus aureus; EV: Enterovirus; CoV: coronavirus; PJ: Pneumocystis jirovecii; Flu‐A: influenza A virus; CMV: Cytomegalovirus; CA: Candida albicans; MC: Moraxella catarrhalis.

TABLE 2.

Comparison of the distribution of some pathogens in different age groups (n, %).

Groups EBV HBoV HPIV RSV CMV PJ WUPyV
≤ 3 y (n = 295) 32 (10.8) 66 (22.4) 52 (17.6) 60 (20.3) 24 (8.1) 36 (12.2) 7 (2.4)
4–15 y (n = 1231) 189 (15.4) 83 (6.7) 52 (4.2) 34 (2.8) 10 (0.8) 6 (0.5) 3 (0.2)
χ 2 3.901 65.986 67.313 127.19 58.586 122.042 13.462
p 0.048 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001

Note: HBoV, human bocavirus; HPIV, human parainfluenza virus; CMV, Cytomegalovirus; WUPyV, WU polyomavirus.

Abbreviations: EBV, Epstein–Barr virus; PJ, Pneumocystis jirovecii; RSV, respiratory syncytial virus.

3.4. Distribution of Pathogens by Season

Patients were grouped by season: spring (March–May, n = 121, 7.9%), summer (June–August, n = 435, 28.5%), autumn (September–November, n = 732, 48%), and winter (December–February, n = 238, 15.6%). The distributions of the top 20 common pathogens in different seasons are shown in Figure 3. It can be clearly seen from Figure 3 that the detection rate of MP significantly increases in autumn. Meanwhile, HRV also shows a relatively high activity level in autumn. In contrast, some pathogens such as SP may not exhibit a very obvious seasonality. A comparison of the distributions of some pathogens in different seasons is shown in Tables 3 and 4. More than half (51.6%) of the MP infections occurred in autumn. Mycobacterium tuberculosis complex (MTBC), HPIV, and CMV infections were more common in spring and summer (p < 0.05). Influenza B virus (Flu‐B) and ADV infections were more common in autumn and winter (p < 0.05). RSV, influenza A virus (Flu‐A), and Fusobacterium nucleatum infections were more common in winter and spring (p < 0.05). Enterovirus infection was more common in summer and autumn (p < 0.05).

FIGURE 3.

FIGURE 3

Distribution of the top 20 common pathogens in different seasons. Note: MP: Mycoplasma pneumoniae; HRV: human rhinovirus; EBV: Epstein–Barr virus; SP: Streptococcus pneumoniae; HBoV: human bocavirus; HI: Haemophilus influenzae; HPIV: human parainfluenza virus; RSV: respiratory syncytial virus; ADV: adenovirus; HMPV: human metapneumovirus; BP: Bordetella pertussis; TW: Tropheryma whipplei; SA: Staphylococcus aureus; EV: Enterovirus; CoV: coronavirus; PJ: Pneumocystis jirovecii; Flu‐A: influenza A virus; CMV: Cytomegalovirus; CA: Candida albicans; MC: Moraxella catarrhalis.

TABLE 3.

Comparison of the distribution of some pathogens in spring/summer seasons and autumn/winter seasons (n, %).

Groups MTBC HPIV CMV Flu‐B ADV
Spring + summer (n = 556) 8 (1.4) 71 (12.8) 21 (3.8) 0 (0) 8 (1.4)
Autumn + winter (n = 970) 1 (0.1) 33 (3.4) 13 (1.3) 14 (1.4) 67 (6.9)
χ 2 8.598 48.836 9.633 / 22.615
p 0.003 < 0.001 0.002 0.003 < 0.001

Note: MTBC, Mycobacterium tuberculosis complex; HPIV, human parainfluenza virus; CMV, Cytomegalovirus; Flu‐B, influenza B virus; ADV, adenovirus.

TABLE 4.

Comparison of the distribution of some pathogens in spring/winter seasons and summer/autumn seasons (n, %).

Groups RSV Flu‐A FN EV
Spring + winter (n = 359) 50 (13.9) 26 (7.2) 14 (3.9) 3 (0.8)
Summer + autumn (n = 1167) 44 (3.8) 11 (0.9) 8 (0.7) 42 (3.6)
χ 2 49.000 46.054 19.962 6.391
p < 0.001 < 0.001 < 0.001 0.011

Note: Flu‐A, influenza A virus; EV, Enterovirus.

Abbreviations: FN, Fusobacterium nucleatum; RSV, respiratory syncytial virus.

4. Discussion

Pediatric CAP remains a significant cause of mortality. Rapid pathogen identification and appropriate anti‐infective therapy are crucial [2]. Alveolar biopsy tissue and BALF are the most accurate samples for CAP pathogen detection [11, 12]. In 2023, multiple pathogens were detected after the COVID‐19 epidemic. This study summarizes the distribution characteristics of the BALF pathogen spectrum in children with CAP in 2023.

In this study, the overall pathogen detection rate in BALF was 99.9%. Lv et al. reported a total positive rate of 77.87% among 4804 children with respiratory infections [13], while Wu et al. reported 67.5% among 10,435 children [14]. These differences are likely attributable to variations in region, host status, detection method sensitivity, and sample type. The five most common pathogens identified in this study were MP (93.0%), HRV, EBV, SP, and HBoV. Wang et al. reported that the pathogens most commonly detected in BALF samples from 573 children were ADV (21.82%), MP (20.24%), HRV (13.96%), SP (8.90%), and HI (8.90%) [15]. The significantly higher MP detection rate in our study is likely due to our selection of severe cases and the high sensitivity of tNGS for detecting MP nucleic acid in BALF. Most of the children in this study had atelectasis, pulmonary consolidation, or severe pneumonia. A multiregional outbreak of MP after the COVID‐19 pandemic is a well‐documented global phenomenon [16–18].

The most common bacteria in this study were SP and HI, consistent with other reports [2, 15]. The two most common viruses were HRV and EBV, which are different from the findings of other studies. Shi and Huang reported that HRV and RSV were the two most common viruses in a study of 10,396 children with acute respiratory tract infection from 2021 to 2022 [19]. The higher EBV detection rate in this study was considered to be related to immune abnormalities after the COVID‐19 pandemic. The mixed infection rate in our study was 62%, with the most common combinations being MP + EBV (13.6%), MP + HRV (13.5%), and MP + SP (12.5%). Zhao et al. performed pathogen detection on 4148 CAP children, 38.18% of whom had mixed infections, and the most common combination was MP combined with HRV [20]. The higher mixed infection rate in this study compared to other reports is primarily attributable to differences in sample types and subject selection, as well as post‐COVID‐19 immune dysregulation and the prolonged impact of NPIs. Of note, the detection of multiple pathogens by tNGS may represent co‐detection rather than true simultaneous pathogenic infection in all cases. Therefore, interpretation should follow the principle of integrating pathogen abundance, pathogenicity, and the patient’s clinical manifestations to determine clinical significance.

In this study, only SA and PJ infections showed a sex‐specific distribution, being more common in males. Zhang et al. reported that there was no statistically significant difference in the sex distribution of different pathogens during the COVID‐19 epidemic [21]. Li et al. reported that there was no sex difference in the pathogen detection rate; however, women were more likely to be infected with viruses, whereas men were more likely to be infected with SP [22]. A study from India revealed that the incidence of acute lower respiratory infections in children under 5 years of age was greater in boys than in girls, and boys had a 2.4‐fold higher rate of acute respiratory infection–related hospitalizations [23]. Zhu et al. reported that Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, Stenotrophomonas maltophilia, and Candida albicans were more common in male infants. HI, Moraxella catarrhalis, and SP were more common in female infants [24]. These data suggest sex‐specific differences exist for certain pathogens.

Pathogen distribution is also associated with age. In our study, HBoV, HPIV, RSV, CMV, PJ, and WU polyomavirus were more common in infants, while EBV was more common in preschool‐aged and school‐aged children. Li et al. conducted a retrospective analysis of 12,546 children with respiratory tract infections from 2018 to 2021 and reported that the incidence of bacterial infection was high in infants, the incidence of viral infection was high in preschool children, and atypical pathogens were the most common in children aged 3–5 years [22]. Zhang et al.’s study of 7668 patients with respiratory tract infections from 2019 to 2021 revealed that RSV, HRV, MP, and HPIV had relatively high detection rates in the infant group (0–6 months) and the young child group (7 months–2 years). The highest positive rates of respiratory pathogens in children (3–6 years) and adolescents (7–18 years) were associated with MP and HRV [21]. Lv et al.’s study of 4804 children with respiratory tract infections from 2019 to 2022 revealed that the infection rates of SP, RSV, and HPIV in the infant group were higher than those in other groups. The HRV infection rate was higher in young children than in other groups. The infection rates of Flu‐A, Chlamydia pneumoniae, MP, and HI in preschool‐aged and school‐aged children are higher than those in infants and young children [13].

Seasonal variation was also observed. In this study, more than half of the MP infections occurred in autumn. MTBC, HPIV, and CMV infections were more common in spring and summer. Flu‐B and ADV infections were more common in autumn and winter. RSV, Flu‐A, and Fusobacterium nucleatum infections were more common in winter and spring. Enterovirus infection was more common in summer and autumn. According to the Beijing Respiratory Pathogen Surveillance System, MP, HPIV, and HRV were the main pathogens identified in September 2023; MP, HPIV, and ADV were the main pathogens identified in October; and MP and RSV were the main pathogens identified in November. Other studies also revealed that MP infection was an important cause of pneumonia in autumn and winter of 2023, with an increase in the MP infection rate [25–29]. A study conducted by Shi and Huang on 10,396 children with acute respiratory infections from 2021 to 2022 revealed that ADV and Chlamydia pneumoniae infections occurred mostly in spring; that coronavirus and Flu‐A infections occurred mostly in summer; that HRV, HBoV, MP, and HPIV infections occurred mostly in autumn; and that RSV and Flu‐B infections occurred mostly in winter [19]. The seasonal prevalence of respiratory pathogens may be related to the following three factors: (i) humidity and temperature, (ii) human behavior (including indoor/outdoor activities, number of close contacts, etc.), and (iii) the effects of changing environmental conditions on host defense mechanisms [30, 31].

In this study, the high rates of MP and mixed infections, along with pathogen distribution differences by sex, age, and season, may be attributed not only to specimen and regional factors but also to post‐COVID‐19 immune dysregulation [32] and NPI‐induced “immune debt” [33].

This study has several limitations, including its single‐center design, short duration, and selection bias toward patients requiring bronchoscopy. In addition, this study did not analyze the association between pathogen distribution and clinical severity, prognosis, or treatment response. This limits the interpretation of the clinical significance of the detected pathogens. Therefore, the actual clinical value of the detected results requires further investigation. The study population consists of children with severe/complex CAP who underwent bronchoscopy; therefore, our findings may not be generalizable to mild or outpatient CAP cases. This selection bias is an inherent feature of the study design, and the interpretation of our results should be limited to this specific population. Moreover, the high detection rate in this study should be interpreted with caution. The high sensitivity of tNGS may lead to overdetection, and some low‐abundance organisms may represent colonization or background contamination rather than true causative pathogens. Therefore, the results should be integrated with clinical manifestations and laboratory findings for comprehensive interpretation.

In conclusion, this single‐center, retrospective study of 1526 pediatric CAP cases in 2023 reveals a distinct BALF pathogen profile, dominated by MP (99.9% overall detection, 62% mixed infections with EBV/HRV) and showing sex‐, age‐, and season‐specific distributions. Due to its design and lack of clinical correlation analysis, these findings should be interpreted as reflecting the local etiological landscape and may not be generalizable.

Author Contributions

X.Z. and J.S. contributed equally to the manuscript. X.Z. and J.S. contributed to the conception and are responsible for the overall content. Z.W., X.Z., and J.S. designed the study. Z.W., Y.W., Y.C., T.H., and D.T. collected the data. Z.W., Y.G., M.W., X.Z., and J.S. analyzed and interpreted the data. Z.W., Y.H., Y.G., and M.W. contributed to the statistical analysis. Z.W. edited the manuscript. X.Z. and J.S. revised the manuscript.

Funding

The authors have nothing to report.

Disclosure

All authors approved the submitted and final versions. A preprint has previously been published [34].

Ethics Statement

The study was approved by the Medical Ethics Review Committee of Maternal and Child Health Hospital of Hubei Province (No. 2024‐107‐01). All patients and their guardians gave informed consent.

Consent

Please see the Ethics Statement.

Conflicts of Interest

The authors declare no conflicts of interest.

Acknowledgments

The authors thank all patients and their families involved in this study and all others who participated in this study.

Wang, Zhongjian , Gan, Yi , Wang, Miao , Hu, Yunyang , Wu, Yabin , Cheng, Ying , Huang, Tao , Tu, Danna , Shu, Junhua , Zhou, Xiaoqin , Pathogen Profile of Pediatric Community‐Acquired Pneumonia in Wuhan, 2023: A BALF‐Based Study, Canadian Respiratory Journal, 2026, 8872950, 8 pages, 2026. 10.1155/carj/8872950

Academic Editor: Lipi Buch

Contributor Information

Junhua Shu, Email: sfysjh2011@163.com.

Xiaoqin Zhou, Email: 62724838@163.com.

Lipi Buch, Email: lbuch@wiley.com.

Data Availability Statement

The data that support the findings of this study are available on request from the corresponding authors. The data are not publicly available due to privacy or ethical restrictions.

References

  • 1. Oumei H., Xuefeng W., Jianping L. et al., Etiology of Community-Acquired Pneumonia in 1500 Hospitalized Children, Journal of Medical Virology. (March 2018) 90, no. 3, 421–428, 10.1002/jmv.24963. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2. Gbd 2016 Lower Respiratory Infections Collaborators, Estimates of the Global, Regional, and National Morbidity, Mortality, and Etiologies of Lower Respiratory Infections in 195 Countries, 1990–2016: A Systematic Analysis for the Global Burden of Disease Study 2016, The Lancet Infectious Diseases. (November 2018) 18, no. 11, 1191–1210, 10.1016/S1473-3099(18)30310-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3. Cawley C., Barsbay M. Ç., Djamangulova T. et al., BoCO-19-Study The Mortality Burden Related to COVID-19 in 2020 and 2021-Years of Life Lost and Excess Mortality in 13 Countries and Subnational Regions in Southern and Eastern Europe, and Central Asia, Frontiers in Public Health. (January 2024) 12, 10.3389/fpubh.2024.1378229. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4. Lai S., Ruktanonchai N. W., Zhou L. et al., Effect of Nonpharmaceutical Interventions to Contain COVID-19 in China, Nature. (September 2020) 585, no. 7825, 410–413, 10.1038/s41586-020-2293-x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5. Baker R. E., Park S. W., Yang W., Vecchi G. A., Metcalf C. J. E., and Grenfell B. T., The Impact of COVID-19 Nonpharmaceutical Interventions on the Future Dynamics of Endemic Infections, Proceedings of the National Academy of Sciences of the United States of America. (December 2020) 117, no. 48, 30547–30553, 10.1073/pnas.2013182117. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6. Liu P., Xu M., Cao L. et al., Impact of COVID-19 Pandemic on the Prevalence of Respiratory Viruses in Children With Lower Respiratory Tract Infections in China, Virology Journal. (August 2021) 18, no. 1, 10.1186/s12985-021-01627-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7. Principi N., Autore G., Ramundo G., and Esposito S., Epidemiology of Respiratory Infections During the COVID-19 Pandemic, Viruses. (May 2023) 15, no. 5, 10.3390/v15051160. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8. Sircar M., Ranjan P., Gupta R. et al., Impact of Bronchoalveolar Lavage Multiplex Polymerase Chain Reaction on Microbiological Yield and Therapeutic Decisions in Severe Pneumonia in Intensive Care Unit, Journal of Critical Care. (Feburary 2016) 31, no. 1, 227–232, 10.1016/j.jcrc.2015.10.012. [DOI] [PubMed] [Google Scholar]
  • 9. Qin W., Guo T., You T., Tian R., Cui X., and Wang P., Metagenomic Next Generation Sequencing of Bronchoalveolar Lavage Fluids for the Identification of Pathogens in Patients With Pulmonary Infection: a Retrospective Study, Diagnostic Microbiology and Infectious Disease. (June 2024) 110, no. 1, 10.1016/j.diagmicrobio.2024.116402. [DOI] [PubMed] [Google Scholar]
  • 10. Lv T., Zhao Q., Liu J. et al., Utilizing Metagenomic Next-Generation Sequencing for Pathogen Detection and Diagnosis in Lower Respiratory Tract Infections in Real-World Clinical Practice, Infection. (April 2024) 52, no. 2, 625–636, 10.1007/s15010-024-02185-1. [DOI] [PubMed] [Google Scholar]
  • 11. Wang J. Z., Yuan D., Yang X. H. et al., Etiology of Lower Respiratory Tract in Pneumonia Based on Metagenomic Next-Generation Sequencing: A Retrospective Study, Frontiers in Cellular and Infection Microbiology. (January 2024) 13, 10.3389/fcimb.2023.1291980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12. Xu Y., Jiang Y., Wang Y., Meng F., Qin W., and Lin Y., Metagenomic Next-Generation Sequencing of Bronchoalveolar Lavage Fluid Assists in the Diagnosis of Pathogens Associated With Lower Respiratory Tract Infections in Children, Frontiers in Cellular and Infection Microbiology. (September 2023) 13, 10.3389/fcimb.2023.1220943. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13. Lv G., Shi L., Liu Y., Sun X., and Mu K., Epidemiological Characteristics of Common Respiratory Pathogens in Children, Scientific Reports. (July 2024) 14, no. 1, 10.1038/s41598-024-65006-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14. Wu Z., Li Y., Gu J., Zheng H., Tong Y., and Wu Q., Detection of Viruses and Atypical Bacteria Associated With Acute Respiratory Infection of Children in Hubei, China, Respirology. (Feburary 2014) 19, no. 2, 218–224, 10.1111/resp.12205. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15. Wang H., Gu J., Li X. et al., Broad Range Detection of Viral and Bacterial Pathogens in Bronchoalveolar Lavage Fluid of Children to Identify the Cause of Lower Respiratory Tract Infections, BMC Infectious Diseases. (Feburary 2021) 21, no. 1, 10.1186/s12879-021-05834-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16. Yan C., Xue G. H., Zhao H. Q., Feng Y. L., Cui J. H., and Yuan J., Current Status of Mycoplasma pneumoniae Infection in China, World Journal of Pediatrics. (January 2024) 20, no. 1, 1–4, 10.1007/s12519-023-00783-x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17. Edens C., Clopper B. R., DeVies J. et al., Notes From the Field: Reemergence of Mycoplasma pneumoniae Infections in Children and Adolescents After the COVID-19 Pandemic, United States, 2018-2024, Morbidity and Mortality Weekly Report. (February 2024) 73, no. 7, 149–151, 10.15585/mmwr.mm7307a3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18. Meyer Sauteur P. M. and Beeton M. L., European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group for Mycoplasma and Chlamydia Infections (ESGMAC), and the ESGMAC Mycoplasma pneumoniae Surveillance (MAPS) Study Group. Mycoplasma pneumoniae: Delayed Re-Emergence After COVID-19 Pandemic Restrictions, The Lancet Microbe. (February 2024) 5, no. 2, e100–e101, 10.1016/S2666-5247(23)00344-0. [DOI] [PubMed] [Google Scholar]
  • 19. Shi T. and Huang L., Prevalence of Respiratory Pathogens and Risk of Developing Pneumonia Under Nonpharmaceutical Interventions in Suzhou, China, Epidemiology and Infection. (May 2023) 151, 10.1017/S0950268823000626. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20. Zhao M. C., Wang L., Qiu F. Z. et al., Impact and Clinical Profiles of Mycoplasma pneumoniae Codetection in Childhood Community-Acquired Pneumonia, BMC Infectious Diseases. (October 2019) 19, no. 1, 10.1186/s12879-019-4426-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21. Zhang J., Yang T., Zou M., Wang L., and Sai L., The Epidemiological Features of Respiratory Tract Infection Using the Multiplex Panels Detection During COVID-19 Pandemic in Shandong Province, China, Scientific Reports. (April 2023) 13, no. 1, 10.1038/s41598-023-33627-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22. Li Q., Song M., Hu Z., Ding Y., Huang C., and Liu J., Pediatric Respiratory Pathogen Dynamics in Southern Sichuan, China: A Retrospective Analysis of Gender, Age, and Seasonal Trends, Frontiers in Pediatrics. (July 2024) 12, 10.3389/fped.2024.1374571. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23. Krishnan A., Amarchand R., Gupta V. et al., Epidemiology of Acute Respiratory Infections in Children-Preliminary Results of a Cohort in a Rural North Indian Community, BMC Infectious Diseases. (October 2015) 15, no. 1, 10.1186/s12879-015-1188-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24. Zhu X., Ye T., Zhong H. et al., Distribution and Drug Resistance of Bacterial Pathogens Associated With Lower Respiratory Tract Infection in Children and the Effect of COVID-19 on the Distribution of Pathogens, The Canadian Journal of Infectious Diseases and Medical Microbiology. (March 2022) 2022, 10.1155/2022/1181283. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25. Gong C., Huang F., Suo L. et al., Increase of Respiratory Illnesses Among Children in Beijing, China, During the Autumn and Winter of 2023, Euro Surveillance. (January 2024) 29, no. 2, 10.2807/1560-7917.ES.2024.29.2.2300704. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26. Wang X., Li M., Luo M. et al., Mycoplasma pneumoniae Triggers Pneumonia Epidemic in Autumn and Winter in Beijing: A Multicenter, Population-Based Epidemiological Study Between 2015 and 2020, Emerging Microbes and Infections. (December 2022) 11, no. 1, 1508–1517, 10.1080/22221751.2022.2078228. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27. Li Y., Wu M., Liang Y. et al., Mycoplasma pneumoniae Infection Outbreak in Guangzhou, China After COVID-19 Pandemic, Virology Journal. (August 2024) 21, no. 1, 10.1186/s12985-024-02458-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28. Zhang X. B., He W., Gui Y. H. et al., Current Mycoplasma pneumoniae Epidemic Among Children in Shanghai: Unusual Pneumonia Caused by Usual Pathogen, World Journal of Pediatrics. (January 2024) 20, no. 1, 5–10, 10.1007/s12519-023-00793-9. [DOI] [PubMed] [Google Scholar]
  • 29. Todkill D., Lamagni T., Pebody R. et al., Persistent Elevation in Incidence of Pneumonia in Children in England, 2023/24, Eurosurveillance. (August 2024) 29, no. 32, 10.2807/1560-7917.ES.2024.29.32.2400485. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30. Neumann G. and Kawaoka Y., Seasonality of Influenza and Other Respiratory Viruses, EMBO Molecular Medicine. (April 2022) 14, no. 4, 10.15252/emmm.202115352. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31. Moriyama M., Hugentobler W. J., and Iwasaki A., Seasonality of Respiratory Viral Infections, Annual Review of Virology. (September 2020) 7, no. 1, 83–101, 10.1146/annurev-virology-012420-022445. [DOI] [PubMed] [Google Scholar]
  • 32. Ryan F. J., Hope C. M., Masavuli M. G. et al., Long-Term Perturbation of the Peripheral Immune System Months After SARS-CoV-2 Infection, BMC Medicine. (January 2022) 20, no. 1, 10.1186/s12916-021-02228-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33. Cohen R., Ashman M., Taha M. K. et al., Pediatric Infectious Disease Group (GPIP) Position Paper on the Immune Debt of the COVID-19 Pandemic in Childhood, How can we Fill the Immunity Gap?, Infectious Disease News. (August 2021) 51, no. 5, 418–423, 10.1016/j.idnow.2021.05.004. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34. Wang Z. J., Gan Y., Wang M. et al., Distribution Characteristics of Pathogen Spectrum in Bronchoalveolar Lavage Fluid of 1526 Children With Community-Acquired Pneumonia in Wuhan in 2023, PREPRINT (Version 1) Available at Research Square. (2023) March 2026 10.21203/rs.3.rs-6171380/v1. [DOI] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

The data that support the findings of this study are available on request from the corresponding authors. The data are not publicly available due to privacy or ethical restrictions.


Articles from Canadian Respiratory Journal are provided here courtesy of Wiley

RESOURCES