Skip to main content
BMJ Open logoLink to BMJ Open
. 2026 Aug 12;16(8):e122964. doi: 10.1136/bmjopen-2026-122964

COVID-19 vaccination among people affected by sexually transmitted and bloodborne infections, methamphetamine use and their intersection in Manitoba, Canada: a retrospective matched cohort analysis using population-based administrative healthcare data (2020–2022)

Souradet Y Shaw 1,2,✉, Alyson Mahar 3,4, Kim Bailey 5, Michael Payne 5,6, Jason Kindrachuk 2, Christine Kelly 1, Kevin J Friesen 4, Charles N Bernstein 7, Joss N Reimer 8,9, Marissa L Becker 1,2, Leigh Michelle McClarty 1, Derek Stein 2,10, Nathan C Nickel 1,4
PMCID: PMC13475451  PMID: 42586735

Abstract

Abstract

Objectives

To examine COVID-19 vaccine uptake among people diagnosed with sexually transmitted and bloodborne infections (STBBIs), people with healthcare-documented methamphetamine use and those experiencing both exposures in Manitoba, Canada.

Design

Population-based retrospective matched cohort study using linked administrative healthcare, laboratory and vaccination data.

Setting

Manitoba, Canada, from 1 March 2020 to 31 March 2022.

Participants

Manitoba residents aged ≥16 years with laboratory-confirmed chlamydia or gonorrhoea, syphilis or HIV and/or healthcare-documented methamphetamine use during the 4 years before 1 March 2020 were classified into eight mutually exclusive exposure cohorts. Individuals were matched with comparators without the corresponding exposure based on age, sex, geographical region and area-level income quintile.

Primary outcome measure

Receipt of ≥2 COVID-19 vaccine doses. Poisson regression models incorporating person-time were used to estimate adjusted rate ratios (aRRs) and 95% CIs.

Results

Compared with matched comparators, vaccine uptake was lower in the Syphilis Only (aRR 0.83, 95% CI 0.80 to 0.86), Syphilis Plus (aRR 0.77, 95% CI 0.74 to 0.79), Chlamydia/Gonorrhoea Only (aRR 0.91, 95% CI 0.90 to 0.92), Chlamydia/Gonorrhoea Plus (aRR 0.74, 95% CI 0.72 to 0.77), Methamphetamine Only (aRR 0.71, 95% CI 0.68 to 0.73) and Methamphetamine plus STBBI cohorts (aRR 0.64, 95% CI 0.62 to 0.67). Uptake in the HIV Only cohort was similar to that among matched comparators (aRR 0.97, 95% CI 0.93 to 1.00). Lower uptake was concentrated among individuals living in lower-income areas.

Conclusions

COVID-19 vaccine uptake was lower among several populations affected by STBBIs, methamphetamine use or both, with the greatest disparity among people experiencing intersecting STBBI and methamphetamine-related exposures. Integrating vaccination with HIV, STBBI, harm-reduction and addiction services may improve vaccine equity during future public health emergencies.

Keywords: Syphilis, COVID-19, HIV & AIDS, EPIDEMIOLOGY, Vaccination


STRENGTHS AND LIMITATIONS OF THIS STUDY.

  • Population-based study using objective measures of COVID-19 vaccination.

  • Regression models addressed confounding by age, geographical area, area-level income, healthcare utilisation and previous mental health and alcohol use disorder diagnoses.

  • Does not capture individuals not interacting with healthcare system.

  • Residual confounding can still be present, with no information on behavioural risk factors for sexually transmitted and bloodborne infections, race/ethnicity and individual-level socioeconomic measures.

Introduction

The speed and scale at which SARS-CoV-2, the virus that causes COVID-19, exposed underlying inequities across global societies was unprecedented, with socioeconomically and structurally disadvantaged populations experiencing disproportionately high rates of infection, severe disease and mortality.1 The central Canadian province of Manitoba experienced the highest cumulative COVID-19 mortality rate nationally,2 highlighting systemic vulnerabilities, including overcrowded housing, precarious employment and barriers to healthcare access.3

The public health response to COVID-19 disrupted routine healthcare services, disproportionately impacting marginalised populations, including those at risk for sexually transmitted and bloodborne infections (STBBI).4 STBBI contribute substantially to health, social and economic burdens globally,5 with chlamydia (CT) and gonorrhoea (NG) among the most widely reported bacterial infections worldwide.5 Untreated STBBI are associated with a range of sequelae and complications, including infertility.1 5 Like COVID-19, STBBI risk is shaped by structural factors including poverty, stigma, racial inequity and social marginalisation.6

In Manitoba, infectious syphilis, congenital syphilis and HIV reached historically high levels before and during the pandemic.7 8 Research from Manitoba demonstrated that among people newly diagnosed with HIV between 2018 and 2021, 62–76% reported methamphetamine use, more than half reported injection drug use and houselessness was common.7 Methamphetamine use was strongly associated with a higher prevalence of multiple STBBI before and after HIV diagnosis, reflecting a syndemic of STBBI, substance use and houselessness.7 Thus, STBBI diagnoses and methamphetamine use can be conceptualised as distinct but intersecting indicators of populations affected by a broader syndemic of infectious disease, substance use, socioeconomic disadvantage and barriers to healthcare access.

Structural determinants driving STBBI and methamphetamine vulnerability also influence healthcare utilisation, including vaccination. These inequities have also resulted in suboptimal outcomes directly and indirectly related to the COVID-19 pandemic9; for example, a US-based study showed those with a diagnosed substance use disorder were at eight times the odds of having COVID-19.10 Studies have demonstrated suboptimal COVID-19 vaccine uptake among those reporting methamphetamine use,11 while among people who inject drugs, uptake as low as 4% has been reported in some high-income countries.12 Although COVID-19 vaccine uptake has been found to be suboptimal in people living with HIV (PLHIV),13 a scoping review found heterogeneity in vaccine hesitancy among PLHIV, with intersecting factors such as unemployment, trust in the medical system, sexual orientation and relationship with healthcare providers contributing to vaccination decisions.14 A systematic review estimated uptake at 72% for North and South America, and factors such as younger age, unemployment and lower education associated with lower uptake.13 One population-based study found comparatively high uptake of COVID-19 vaccines in a cohort of PLHIV15; however, this study only examined those living with HIV, and not those with other STBBIs or substance users.

Thus, important gaps remain in understanding COVID-19 vaccine coverage among people affected by STBBI other than HIV, particularly where substance use and other forms of structural vulnerability intersect. Given the well-documented syndemic relationship between STBBI and methamphetamine use in Manitoba, we examined vaccine uptake across distinct populations affected by STBBI, healthcare-documented methamphetamine use or both during the acute phase of the pandemic. Using linked population-based administrative healthcare data, we quantified differences in COVID-19 vaccine coverage across these populations to inform more equitable vaccination strategies during future public health emergencies.

Methods

Population setting, data sources and study design

Manitoba is a centrally-located Canadian province with a population of 1.4 million people; almost 70% of the Manitoba population resides in the capital city of Winnipeg. Manitoba often has the highest rates of CT and NG nationally,16 and more recently reported the highest rates of infectious and congenital syphilis17 and HIV.18 This study used a retrospective observational analysis, using a matched-cohort design, using public health laboratory data from Cadham Provincial Laboratory (CPL) and the Public Health Information Management System (PHIMS), linked to routinely collected population-based administrative healthcare data housed at the Manitoba Centre for Health Policy (MCHP). Manitobans are provided universal healthcare through a single insurer (Manitoba Health), and all residents of Manitoba are assigned personal health identification numbers to track reimbursement to healthcare professionals. CPL provides the majority (>95%) of testing for CT and NG, and all testing for syphilis and HIV in Manitoba. PHIMS tracks all vaccinations administered in Manitoba. Population-based physician claims, hospitalisations, pharmaceutical dispensations and other routine social and healthcare data can be linked at MCHP, creating longitudinal healthcare records of individuals receiving care in Manitoba.19

Cohort creation, outcomes and comparator cohorts

STBBI cohorts were defined using CPL data, and included all individuals aged 16 years or older, and who had a positive laboratory test for CT/NG, syphilis and/or HIV in the 4-year period (as measured by specimen collection date) prior to the COVID-19 pandemic reaching Manitoba on 1 March 2020. Positive tests were determined as per CPL protocols20; for CT/NG, this meant detection through nucleic acid tests in genitourinary specimens; for HIV, serological detection of HIV-1/HIV-2 antibodies or detection of nucleic acid through PCR; for syphilis, identification of Treponema pallidum by dark-field microscopy, fluorescent antibody or detection of T. pallidum DNA by nucleic acid amplification testing. For each STBBI, individuals were grouped into an ‘Only’ cohort, meaning a positive test for only that pathogen in the 4-year period, or a ‘Plus’ (or co-infection) cohort, which included members testing positive for more than one of the pathogens. For example, the ‘HIV Only’ cohort included only those with a positive HIV test recorded in the 4 years prior to 1 March 2020, while the ‘HIV Plus’ cohort included those with a positive test for HIV, and a positive test for one or more of CT, NG or syphilis in the same time period. In addition to creating cohorts of people with positive tests for STBBI, we also created a cohort of individuals who had contact with the healthcare system because of their use of methamphetamine. Based on the work of Nickel et al, these individuals were identified using a combination of International Classification of Diseases (ICD) codes in hospitalisation and physician visits data, keyword searches in emergency department and fire and paramedic services data and from diagnostic tests where methamphetamine was identified.21 Similar to the STBBI cohorts, the case definition was applied to the 4 years prior to 1 March 2020. In total, eight cohorts were created: HIV Only, HIV Plus, CT/NG Only, CT/NG Plus, Syphilis Only, Syphilis Plus, Methamphetamine Only and Methamphetamine+STBBI (which included those with STBBI diagnoses). For the purposes of this manuscript, we will refer to these eight cohorts as the ‘exposed’ cohorts.

Scrambled identification numbers were used to deterministically link members of each cohort to administrative healthcare data housed at MCHP, including information from PHIMS. The outcome for each cohort was the receipt of two or more doses (‘primary series’) of a COVID-19 vaccine between 1 December 2020 and 31 March 2022. For the purposes of these analyses, all individuals had to have been continuously registered in Manitoba Health’s insurance registry from the start of the study (1 February 2016) to the end of the study (31 March 2022). Thus, anyone who left the province of Manitoba or who died during the study period were excluded; less than 0.5% of our sample were excluded for these reasons. Individuals in each of the cohorts were directly matched (without replacement) to Manitobans with no history of a positive STBBI test or evidence of methamphetamine use recorded in Manitoba during the study period at a 5:1 ratio based on sex, birth year and forward sortation area (or the first three digits of the postal code) and income quintile as of 1 February 2020. Because of the large number of CT/NG cases, the matching ratio was 3:1. Thus, each cohort was matched to their own comparator cohort; we refer to the comparator cohorts as ‘unexposed’.

Area-level income quintiles were created using data from Statistics Canada and were defined using dissemination area and linked to individuals by their postal code; areas included in income quintile 1 (IQ1) were considered to have the lowest income levels, while income quintile 5 (IQ5) had the highest income levels. Rural and urban income quintiles were combined for these analyses. Ambulatory physician visits in the year prior to 1 February 2020 were recorded and categorised as 0, 1–2, 3–4 and 5+visits and were treated as confounders in regression models. Other confounders included a binary indicator of any mental health diagnosis in the year prior to 1 February 2020, using established case-finding algorithms for schizophrenia, mood/anxiety disorders (which include obsessive-compulsive and bipolar disorders) and attention deficit/hyperactivity disorder.22 Finally, using the same 1-year window, we created a binary indicator for alcohol use disorder.23 Case-finding algorithms used a combination of ICD coding from physician and hospital visits and pharmaceutical dispensations.22 23

Statistical analyses

Descriptive statistics were used to describe cohorts by age group, sex, regional health authority, income quintile, physician visits in the year prior to the pandemic and by COVID-19 vaccination status. Partially and fully (adjusted for physician visits, mental health diagnoses and diagnosed alcohol use disorder, in addition to all matched variables) Poisson regression models examining the association between cohort membership (ie, each ‘exposed’ cohort and their ‘unexposed’ comparator cohort) and outcomes were estimated for each of the eight cohorts. Person-years (PY) were used as the offset variable, and partially and adjusted rate ratios (aRRs) and 95% CIs were used to quantify the association, with a p value of <0.05 considered statistically significant. PY were used as an offset to account for differences in follow-up time for individuals to receive their COVID-19 vaccinations; thus, a person receiving their COVID-19 dose(s) earlier on in the pandemic contributed less person-time compared with a person receiving their vaccine later in the pandemic. As an additional analysis, equiplots (www.equidade.org/en/equiplot) were used to illustrate inequalities in vaccination in each exposed cohort by income quintile.

Patient and public involvement

No patient or public involvement in study design or conduct of the study. Study results have been disseminated to community organisations in Winnipeg.

Results

For the exposed cohorts, a total of 2045 individuals were included in the Syphilis Only cohort, and 2482 included in the Syphilis Plus cohort (table 1). There were 995 and 377 individuals in the HIV Only and Plus cohorts, respectively; 21 984 and 2430 in the CT/NG Only and Plus cohorts; and 2832 and 2232 in the Methamphetamine Only and Methamphetamine+STBBI cohorts. Table 1 shows the socio-demographic and COVID-19-related characteristics of each exposed cohort. Approximately 70% of the Syphilis Only cohort were less than 45 years of age, compared with 90% of the Syphilis Plus cohort. The difference in age distribution was mostly due to the Syphilis Plus cohort containing more individuals aged 16–24 years (28% vs 11%). The difference in age between ‘Only’ and ‘Plus’ cohorts was true with each of the exposed cohorts, with the exception of the CT/NG cohort; 61% of the HIV Plus cohort were under the age of 45 years, compared with 42% of the HIV Only cohort, while 93% of the Methamphetamine+STBBI cohort were less than 45 years of age, compared with 81% of the Methamphetamine Only cohort. In contrast, the CT/NG Plus cohort contained more individuals aged between 25 and 44 years of age, compared with the CT/NG Only cohort (65% vs 53%). The Syphilis Plus and Methamphetamine+STBBI cohorts were composed of more women, compared with the Syphilis and Methamphetamine Only cohorts (56% vs 36% and 64% vs 40%, respectively). With the exception of the HIV cohorts, each ‘Plus’ (and for Methamphetamine, the +STBBI) cohort contained more individuals living in lowest income quintile areas, compared with their respective singly exposed cohort. For example, 44% of the CT/NG Plus cohort lived in the lowest income quintile areas, compared with 31% of the CT/NG Only cohort. Mental health diagnoses in the year prior to the pandemic ranged from 19.2% (HIV Only) to 50.4% (Meth Only); diagnosed alcohol use disorder was also highest in the Meth Only cohort (12.4%), while lowest in the CT/NG Only cohort (2.8%).

Table 1. Socio-demographic and COVID-19-related characteristics, exposed cohorts, sexually transmitted and bloodborne infection and methamphetamine cohorts, Manitoba (2020–2022).

  Syphilis (n, %) HIV (n, %) Chlamydia/gonorrhoea (n, %) Methamphetamine (n, %)
Syphilis Only
(n=2045)
Syphilis Plus
(n=2482)
HIV Only
(n=995)
HIV Plus
(n=377)
CT/NG Only
(n=21 984)
CT/NG Plus
(n=2430)
Meth Only
(n=2832)
Meth+STBBI
(n=2232)
Age group (years)                
 16–24 217 (10.6) 692 (27.9) 21 (2.1) 20 (5.3) 9190 (41.8) 693 (28.5) 434 (15.3) 552 (24.7)
 25–44 1235 (60.4) 1548 (62.4) 335 (39.6) 208 (55.2) 11 740 (53.4) 1573 (64.7) 1848 (65.3) 1528 (68.5)
 45–59 425 (20.8) 196 (7.9) 470 (43.1) 122 (32.4) 945 (4.3) 136 (9.5) 480 (16.9) 141 (6.3)
 60+ 168 (8.2) 46 (1.9) 169 (17.0) 27 (7.2) 109 (0.5) 28 (2.0) 70 (2.5) 11 (0.05)
Sex                
 Male 1301 (63.6) 1109 (44.4) 627 (63.0) 253 (57.1) 8789 (40.0) 1028 (42.3) 1691 (59.7) 798 (35.8)
 Female 744 (36.4) 1379 (55.6) 368 (37.0) 124 (32.9) 13 195 (60.0) 1402 (57.7) 1141 (40.3) 1434 (64.2)
Regional health authority                
 Interlake-Eastern 146 (7.1) 157 (6.3) 57 (5.7) 21 (5.6) 2132 (9.7) 157 (6.5) 181 (6.4) 162 (7.3)
 Northern 489 (23.9) 647 (26.1) 44 (4.4) 22 (5.8) 4727 (21.5) 648 (26.7) 140 (4.9) 169 (7.6)
 Southern 111 (5.4) 78 (3.1) 45 (4.5) s 1614 (7.3) 75 (3.1) 140 (4.9) 78 (3.5)
 Prairie Mountain 105 (5.1) 93 (3.7) 54 (5.4) 15 (4.0) 2172 (9.9) 91 (3.7) 273 (9.6) 134 (6.0)
 Winnipeg 1194 (58.4) 1507 (60.7) 795 (79.9) 319 (84.6) 11 339 (51.6) 1459 (60.0) 2098 (74.1) 1689 (75.7)
Income quintile                
 Q1 (lowest) 787 (38.5) 1100 (44.3) 534 (53.7) 203 (53.8) 6839 (31.0) 1073 (44.2) 1399 (49.4) 1245 (55.8)
 Q2 581 (28.4) 776 (31.3) 179 (18.0) 70 (18.6) 6315 (28.7) 765 (31.5) 611 (21.6) 503 (22.5)
 Q3 265 (13.0) 218 (8.8) 127 (12.8) 43 (11.4) 3527 (16.0) 208 (8.6) 369 (13.0) 190 (8.5)
 Q4 270 (13.2) 273 (11.0) 98 (9.8) 40 (11.9) 2980 (13.6) 273 (11.2) 290 (10.2) 206 (9.2)
 Q5 (highest) 142 (6.9) 115 (4.6) 57 (5.7) 21 (5.6) 2323 (10.6) 111 (5.6) 163 (5.8) 88 (3.9)
Physician visits, 1-year prior to COVID-19 pandemic                
 0 270 (13.2) 384 (15.5) 40 (4.0) 16 (4.2) 3505 (15.9) 383 (15.8) 244 (8.6) 177 (7.9)
 1–2 205 (10.0) 286 (11.5) 41 (4.1) 16 (4.2) 2326 (10.6) 287 (11.8) 182 (6.4) 161 (7.2)
 2–4 435 (21.3) 552 (22.2) 187 (18.8) 84 (22.3) 5438 (24.7) 540 (22.2) 387 (13.7) 351 (15.7)
 5+ 1135 (55.5) 1260 (50.8) 727 (73.1) 261 (69.2) 10 715 (48.7) 1220 (50.2) 2019 (71.3) 1543 (69.1)
Mental health diagnosis (1 year prior to pandemic)                
 No 1622 (79.3) 1932 (77.8) 804 (80.8) 286 (75.9) 17 693 (80.5) 1888 (77.7) 1404 (49.6) 1279 (57.3)
 Yes 423 (20.7) 550 (22.2) 191 (19.2) 91 (24.1) 4291 (19.5) 542 (22.3) 1428 (50.4) 953 (42.7)
Alcohol use disorder diagnosis (1 year prior to pandemic)                
 No 1935 (94.6) 2337 (94.2) 957 (96.2) 357 (94.7) 21 366 (97.2) 2283 (94.0) 2480 (87.6) 1962 (87.9)
 Yes 110 (5.4) 145 (5.8) 38 (3.8) 20 (5.3) 618 (2.8) 147 (6.1) 352 (12.4) 270 (12.1)

CT, chlamydia; NG, gonorrhoea; STBBI, sexually transmitted and bloodborne infections.

Apart from the HIV Only cohort, those exposed were less likely to have received the primary series of vaccinations than their matched comparator cohort (table 2 and figure 1). For example, 72.3% (vaccination rate: 480.7 (95% CI 456.8 to 505.9) per 1000 PY) of individuals in the Syphilis Only cohort had received their primary series, compared with 80.6% of their matched cohort (557.0 (95% CI 545.1 to 569.2) per 1000 PY). Similarly, 68.1% (vaccination rate: 428.1 (95% CI 408.2 to 449.0) per 1000 PY) of the Syphilis Plus cohort received their complete primary series, compared with 79.7% (544.1 (95% CI 533.5 to 554.9) per 1000 PY) of their matched cohort. In comparison, 84.8% (597.0 (95% CI 558.0 to 638.6) per 1000 PY) of the HIV Only cohort received their primary series, compared with 82.5% (577.3 (95% CI 559.9 to 595.2) per 1000 PY) of the matched cohort. Of note, the proportion vaccinated in the HIV Plus cohort was 75.6% (511.2 (95% CI 455.2 to 574.1) per 1000 PY), lower than their matched cohort (79.6%, or 547.6 (95% CI 520.1 to 576.0) per 1000 PY).

Table 2. Total number, vaccination rate and 95% CIs (per 1000 person-years) of exposed cohorts and their matched comparators*, STBBI and methamphetamine cohorts, Manitoba (2020–2022).

Cohort N 2+COVID-19 vaccinations (n, %) Vaccination rate per 1000 person-years (95% CI)
Syphilis Only 2045 1479 (72.3) 480.7 (456.8 to 505.9)
 Matched cohort 10 225 8237 (80.6) 557.0 (545.1 to 569.2)
Syphilis Plus 2482 1691 (68.1) 428.1 (408.2 to 449.0)
 Matched cohort 12 410 9888 (79.7) 544.1 (533.5 to 554.9)
HIV Only 995 844 (84.8) 597.0 (558.0 to 638.6)
 Matched cohort 4975 4104 (82.5) 577.3 (559.9 to 595.2)
HIV Plus 377 285 (75.6) 511.2 (455.2 to 574.1)
 Matched cohort 1885 1501 (79.6) 547.6 (520.1 to 576.0)
Chlamydia/Gonorrhoea Only 21 984 16 817 (76.5) 498.4 (490.9 to 505.9)
 Matched cohort 65 034 51 056 (78.5) 531.8 (527.2 to 536.4)
Chlamydia/Gonorrhoea Plus 2430 1640 (67.5) 420.8 (401.0 to 441.7)
 Matched cohort 7290 5828 (80.0) 547.7 (533.9 to 562.0)
Methamphetamine Only 2832 1825 (64.4) 406.1 (387.9 to 425.2)
 Matched cohort 14 160 11 128 (78.6) 534.0 (524.2 to 544.0)
Methamphetamine+STBBI 2232 1366 (61.2) 370.8 (351.6 to 391.0)
 Matched cohort 11 160 8747 (78.4) 532.6 (521.6 to 543.9)
*

Matched by age, sex, income quintile and regional health authority at a 5:1 ratio, with the exception of the chlamydia/gonorrhoea cohort, which was matched at a 3:1 ratio.

STBBI, sexually transmitted and bloodborne infections.

Figure 1. Vaccination rate and 95% CIs (per 1000 person-years) for COVID-19 vaccine uptake (2+doses), by STBBI and methamphetamine cohorts, Manitoba (2020–2022). ‘Only’: Only that infection/condition detected in administrative healthcare and laboratory data; ‘Plus’: co-infection/comorbidity with at least one other STBBI (incl. syphilis, CT/NG and/or HIV) in the 4 years prior to March 2020. CT, chlamydia; NG, gonorrhoea; Meth, methamphetamine; STBBI, sexually transmitted and bloodborne infection.

Figure 1

Table 3 contains the results from Poisson regression models examining the association between membership in exposed cohorts and the likelihood of receiving the primary series of COVID-19 vaccinations. In fully adjusted models, and compared with their matched unexposed cohort, those belonging to the Syphilis Only cohort were 17% less likely (aRR: 0.83, 95% CI 0.80 to 0.86) to receive their primary series; this difference increased to 23% (aRR: 0.77, 95% CI 0.74 to 0.79) for the Syphilis Plus cohort. Similarly, those in the CT/NG Only cohort were 9% less likely (aRR: 0.91, 95% CI 0.90 to 0.92) to receive their primary series, while those in the CT/NG Plus cohort were 26% less likely (aRR: 0.74, 95% CI 0.72 to 0.77), compared with their respective matched cohort. The aRRs were 0.71 (95% CI 0.68 to 0.73) and 0.64 (95% CI 0.62 to 0.67) for the Methamphetamine Only and Methamphetamine+STBBI cohorts for primary series vaccinations, respectively, compared with their matched cohort. For HIV, while those in the HIV Plus cohort were significantly less likely to have received their primary series (aRR: 0.87, 95% CI 0.81 to 0.94), this association was not statistically significant for the HIV Only cohort (aRR: 0.97, 95% CI 0.93 to 1.004).

Table. 3 RRs and 95% CIs from partial and full* Poisson regression models examining the association between 2+COVID-19 vaccinations of exposed cohorts and their matched comparators†, STBBI and methamphetamine cohorts, Manitoba (2020–2022).

2+COVID-19 vaccinations
(RR (95% CI))
Partial Full*
Syphilis    
 Syphilis Only‡ 0.86 (0.83 to 0.90) 0.83 (0.80 to 0.86)
 Syphilis Plus§ 0.79 (0.76 to 0.82) 0.77 (0.74 to 0.79)
HIV    
 HIV Only‡ 1.03 (0.996 to 1.07) 0.97 (0.93 to 1.004)
 HIV Plus§ 0.94 (0.86 to 1.01) 0.87 (0.81 to 0.94)
CT/NG    
 CT/NG Only‡ 0.94 (0.93 to 0.95) 0.91 (0.90 to 0.92)
 CT/NG Plus§ 0.77 (0.74 to 0.80) 0.74 (0.72 to 0.77)
Meth    
 Meth Only‡ 0.76 (0.74 to 0.79) 0.71 (0.68 to 0.73)
 Meth+STBBI§ 0.70 (0.67 to 0.73) 0.64 (0.62 to 0.67)
*

Full models include number of physician visits in the year prior to the COVID-19 pandemic, categorised as 0, 1–2, 3–4, 5+visits; and binary indicators for mental health diagnoses and diagnosed alcohol use disorder.

†

Matched by age, sex, income quintile and regional health authority at a 5:1 ratio, with the exception of the chlamydia/gonorrhoea cohort, which was matched at a 3:1 ratio.

‡

No other STBBI co-infection.

§

Multiple infections with at least one other STBBI (incl. syphilis, CT/NG and/or HIV) in the four years prior to March 2020.

CT, chlamydia; Meth, methamphetamine; NG, gonorrhoea; RR, rate ratio; STBBI, sexually transmitted and bloodborne infections.

Figure 2 contains a visualisation of inequalities in the distribution of COVID-19 vaccinations, by income quintile for all eight exposed cohorts, and for Manitoba overall. In almost all cohorts, those living in lowest income quintile areas (IQ1) substantially trailed those living in areas with higher income quintiles for primary series vaccinations. For example, in the Syphilis Only cohort, approximately 67% of those living in the lowest income communities received their primary series, compared with 74% in the next income quintile, for a risk difference of 7%. The proportion living in the lowest income communities receiving their primary series was even lower in the Syphilis Plus cohort, at 61%.

Figure 2. Equiplots illustrating COVID-19 vaccine uptake (2+doses), by income quintile, STBBI and methamphetamine cohorts, Manitoba (2020–2022). ‘Only’: Only that infection/condition detected in administrative healthcare and laboratory data; ‘Plus’: co-infection/comorbidity with at least one other STBBI (incl. syphilis, CT/NG and/or HIV) in the 4 years prior to March 2020. CT, chlamydia; NG, gonorrhoea; Meth, methamphetamine; STBBI, sexually transmitted and bloodborne infection.

Figure 2

Discussion

Our findings demonstrate that COVID-19 vaccine uptake was lower across several distinct populations affected by STBBI, healthcare-documented methamphetamine use, or both, compared with matched comparator cohorts. However, the magnitude of this disparity varied. Uptake in the HIV Only cohort was comparable to that of matched comparators, whereas it was modestly lower among people with CT/NG alone and substantially lower among those with multiple STBBI diagnoses or healthcare-documented methamphetamine use. The greatest disparity occurred among individuals with both methamphetamine use and STBBI, who were approximately 36% less likely to complete the primary vaccine series.

Although Canada achieved high overall COVID-19 vaccine coverage,24 substantial inequities persisted among marginalised populations.14 25 Our findings are consistent with studies documenting suboptimal vaccination among people who use drugs and those experiencing housing instability.14 In Vancouver’s inner city, fewer than half of participants reporting unstable housing and injection drug use had completed the primary vaccine series.26 Similarly, a study among people who inject drugs in San Diego found that only 39% had received at least one vaccine dose by the end of March 2022.27 In New York City, vaccine hesitancy among people who inject drugs was associated with limited prior vaccination and negative attitudes toward vaccines.28 Together, these findings suggest that barriers extend beyond vaccine availability and may include unstable living conditions, limited healthcare engagement, mistrust and competing social and health priorities.

The HIV Only cohort represented an important exception; vaccine uptake in this group was comparable to an unexposed matched cohort, consistent with findings from Ontario, Canada.15 In their retrospective matched-cohort study of PLHIV in Ontario, Freitas et al found uptake of 2+doses of the COVID-19 vaccine was at 85% for those with HIV, and 83% for those not living with HIV15; exactly the proportions we report for the HIV Only and its matched cohort. In their scoping review, Newman et al found that vaccine hesitancy among PLHIV was dependent on a number of factors, some of which were protective against hesitancy.14 These included individual-level factors such as the perceived threat of COVID-19 on their health, and level of engagement with healthcare practitioners.14 Manitoba has a centralised programme for PLHIV—the Manitoba HIV programme; this programme has prioritised engagement and sustaining care for PLHIV. During the acute phase of the pandemic, the Manitoba HIV programme pivoted to virtual care models, while also prioritising COVID-19 vaccines when they became available for PLHIV. Co-location of COVID-19 vaccination service with other services related to injection drug use has been found to be successful from the vaccination uptake perspective, with one study showing PWID using co-located services having higher-than-average (94%) uptake of 2+doses of the vaccine.29

Our observation that STBBI co-infected cohorts experienced the lowest vaccine uptake is novel. Previous Manitoba research has shown that STBBI co-infections are associated with younger age, inner-city residence,30 repeat infections31 and higher social deprivation.32 These same structural determinants likely contribute to inequities in vaccination. Understanding barriers and facilitators to vaccine uptake in these populations may help inform future vaccination strategies, including for emerging STBBI vaccines.

Strengths of this study include the use of linked population-based datasets, objective vaccination measures and the ability to define co-infected STBBI cohorts. We also adjusted for healthcare utilisation, mental health diagnoses and diagnosed alcohol use disorders. Limitations include the inability to capture individuals not interacting with the healthcare system; however, we would expect that this would bias our results even more positively; that is, a greater discrepancy in vaccine uptake would be shown between people with STBBI who do not regularly access healthcare and a comparable cohort. We also lacked detailed information regarding behavioural risk factors for STBBI, individual-level socioeconomic measures and race/ethnicity data, thus residual confounding may still be present.

COVID-19 vaccine uptake among PLHIV without other STBBI diagnoses did not differ significantly from matched comparators, suggesting that sustained engagement in specialised HIV care may support equitable vaccine delivery. In contrast, individuals with multiple STBBI diagnoses and methamphetamine use were substantially less likely to complete the primary vaccine series. Understanding how infection status, substance use and socioeconomic inequities intersect is essential for designing equitable vaccination strategies during future public health emergencies.

Acknowledgements

“The authors acknowledge the Manitoba Centre for Health Policy for use of data contained in the Manitoba Population Research Data Repository under project #55932 (PHRPC#P2022-117). The results and conclusions are those of the authors and no official endorsement by the Manitoba Centre for Health Policy, Manitoba Health, or other data providers and the Public Health Agency of Canada is intended or should be inferred. Data used in this study are from the Manitoba Population Research Data Repository housed at the Manitoba Centre for Health Policy, Repository housed at the Manitoba Centre for Health Policy, University of Manitoba and were derived from data provided by Manitoba Health.”

Footnotes

Funding: SYS – Canada Research Chairs (Grant #: CRC-2019-381), Canadian Institutes for Health Research Operating Grant (EG2-179430)

Prepublication history for this paper is available online. To view these files, please visit the journal online (https://doi.org/10.1136/bmjopen-2026-122964).

Patient consent for publication: Not applicable.

Ethics approval: This study involves human participants and was approved by University of Manitoba Health Research Ethics Board (HS25742). Secondary use of anonymised routine healthcare data is exempt from informed consent.

Provenance and peer review: Not commissioned; externally peer reviewed.

Patient and public involvement: Patients and/or the public were not involved in the design, or conduct, or reporting, or dissemination plans of this research.

Data availability statement

No data are available.

References

  • 1.Webb Hooper M, Nápoles AM, Pérez-Stable EJ. COVID-19 and Racial/Ethnic Disparities. JAMA . 2020;323:2466. doi: 10.1001/jama.2020.8598. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Government of Canada Coronvirus disease (COVID-19): outbreak update 2021. [20-Aug-2021]. https://www.canada.ca/en/public-health/services/diseases/2019-novel-coronavirus-infection.html Available. Accessed.
  • 3.Government of Manitoba . Winnipeg, MB: 2021. COVID-19 novel coronavirus: Race, ethnicity, indigeneity (REI) analysis wave three. [Google Scholar]
  • 4.Ogunbodede OT, Zablotska-Manos I, Lewis DA. Potential and demonstrated impacts of the COVID-19 pandemic on sexually transmissible infections. Curr Opin Infect Dis. 2021;34:56–61. doi: 10.1097/QCO.0000000000000699. [DOI] [PubMed] [Google Scholar]
  • 5.Chesson HW, Mayaud P, Aral SO, et al. In: Disease control priorities: major infectious diseases. Holmes KK, Bertozzi S, Bloom BR, editors. Washington, DC: The World Bank; 2017. Sexually transmitted infections: impact and cost-effectiveness of prevention; pp. 203–32. [PubMed] [Google Scholar]
  • 6.Aral SO. Behavioral aspects of sexually transmitted diseases: core groups and bridge populations. Sex Transm Dis. 2000;27:327–8. doi: 10.1097/00007435-200007000-00005. [DOI] [PubMed] [Google Scholar]
  • 7.Sharp A, Sorokopud-Jones M, Haworth-Brockman M, et al. Sex differences in houselessness, injection drug use, and mental health conditions among people newly diagnosed with HIV in Manitoba, Canada from 2018 to 2021: a retrospective cohort study. Lancet Reg Health Am . 2024;36:100805. doi: 10.1016/j.lana.2024.100805. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Shaw SY, Ross C, Nowicki DL, et al. Infectious syphilis in women: what’s old is new again? Int J STD AIDS. 2017;28:77–87. doi: 10.1177/0956462415627397. [DOI] [PubMed] [Google Scholar]
  • 9.Apelian H, Aho J, Wong E, et al. The impact of the COVID-19 pandemic on social determinants of health, mental health, and substance use among key populations affected by sexually transmitted and blood-borne infections in Canada. Can J Public Health. 2024;115:432–42. doi: 10.17269/s41997-024-00888-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Wang QQ, Kaelber DC, Xu R, et al. COVID-19 risk and outcomes in patients with substance use disorders: analyses from electronic health records in the United States. Mol Psychiatry. 2021;26:30–9. doi: 10.1038/s41380-020-00880-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Javanbakht M, Khan L, Mustanski B, et al. Substance use and other factors associated with COVID-19 vaccine uptake among people at risk for or living with HIV: Findings from the C3PNO consortium. Prev Med Rep. 2023;35:102300. doi: 10.1016/j.pmedr.2023.102300. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Price O, Swanton R, Grebely J, et al. Vaccination coverage among people who inject drugs: A systematic review. Int J Drug Policy. 2024;127:104382. doi: 10.1016/j.drugpo.2024.104382. [DOI] [PubMed] [Google Scholar]
  • 13.Sulaiman SK, Musa MS, Tsiga-Ahmed FI, et al. A systematic review and meta-analysis of the global prevalence and determinants of COVID-19 vaccine acceptance and uptake in people living with HIV. Nat Hum Behav. 2024;8:100–14. doi: 10.1038/s41562-023-01733-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Newman PA, Dinh DA, Nyoni T, et al. Covid-19 Vaccine Hesitancy and Under-Vaccination among Marginalized Populations in the United States and Canada: A Scoping Review. J Racial Ethn Health Disparities. 2025;12:413–34. doi: 10.1007/s40615-023-01882-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Freitas C, Cooper CL, Kroch AE, et al. COVID-19 vaccine uptake in a retrospective population-based cohort of people living with and without HIV in Ontario, Canada. Vaccine. 2025;61 doi: 10.1016/j.vaccine.2025.127422. [DOI] [PubMed] [Google Scholar]
  • 16.Public Health Agency of Canada . Ottawa, Ontario: Ministry of Health; 2019. Report on sexually transmitted infections in canada, 2017. [Google Scholar]
  • 17.Public Health Agency of Canada . Centre for Communicable Diseases and Infection Control. Ottawa, Canada: Public Health Agency of Canada; 2020. Syphilis in canada, technical report on epidemiological trends, determinants and interventions. [Google Scholar]
  • 18.Public health agency of canada HIV in canada: 2024 surveillance highlights. 2026
  • 19.Roos NP, Black C, Roos LL, et al. Managing health services: how the Population Health Information System (POPULIS) works for policymakers. Med Care. 1999;37:JS27–41. doi: 10.1097/00005650-199906001-00007. [DOI] [PubMed] [Google Scholar]
  • 20.Manitoba Health Communicable disease management protocols. 2025. https://www.gov.mb.ca/health/publichealth/cdc/protocol/ Available.
  • 21.Nickel NC, Chartier M, McDonald N, et al. Methamphetamine Use in Manitoba: A Linked Administrative Data Study. Winnipeg, MB: Manitoba Centre for Health Policy; 2020. [Google Scholar]
  • 22.Chartier M, Bolton J, Mota N, et al. Mental Illness among Adult Manitobans. Winnipeg, MB: Manitoba Centre for Health Policy; 2018. [Google Scholar]
  • 23.Nickel NC, Bolton J, MacWilliam L, et al. Health and Social Outcomes Associated with High-Risk Alcohol Use. Winnipeg, MB: Manitoba Centre for Health Policy; 2018. [Google Scholar]
  • 24.Government of Canada COVID-19 vaccination in Canada 2025. 2025. https://health-infobase.canada.ca/covid-19/vaccination-coverage/ Available.
  • 25.Morens DM, Fauci AS. The 1918 influenza pandemic: insights for the 21st century. J Infect Dis. 2007;195:1018–28. doi: 10.1086/511989. [DOI] [PubMed] [Google Scholar]
  • 26.Beitari S, Yi S, Sharma S, et al. Exploring COVID-19 vaccine uptake and hesitancy among vulnerable populations in inner city Vancouver, Canada: Insights into characteristics and clinical outcomes. Vaccine. 2024;42 doi: 10.1016/j.vaccine.2024.04.050. [DOI] [PubMed] [Google Scholar]
  • 27.Strathdee SA, Abramovitz D, Vera CF, et al. Predictors of COVID-19 vaccine uptake among people who inject drugs. Vaccine. 2023;41:1916–24. doi: 10.1016/j.vaccine.2023.01.042. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Khezri M, McKnight C, Weng CA, et al. COVID-19 vaccination uptake and determinants of booster vaccination among persons who inject drugs in New York City. PLoS One. 2024;19:e0303394. doi: 10.1371/journal.pone.0303394. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29.Heidari O, Meyer D, Lowensen K, et al. Colocating Syringe Services, COVID-19 Vaccination, And Infectious Disease Testing: Baltimore’s Experience. Health Aff (Millwood) 2024;43:883–91. doi: 10.1377/hlthaff.2024.00032. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Shaw SY, Elliott LJ, Nowicki DL, et al. Comparing the Ecological Niches of Chlamydial and Gonococcal Infections in Winnipeg, Canada: 2007-2016. Sex Transm Dis. 2021;48:837–43. doi: 10.1097/OLQ.0000000000001446. [DOI] [PubMed] [Google Scholar]
  • 31.Trecker MA, Dillon J-AR, Lloyd K, et al. Demographic and behavioural characteristics predict bacterial STI reinfection and coinfection among a cross-sectional sample of laboratory-confirmed gonorrhea cases in a local health region from Saskatchewan, Canada. Can J Public Health. 2015;106:e17–21. doi: 10.17269/rcsp.106.4792. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 32.Das S, Sabin C, Wade A, et al. Sociodemography of genital co-infection with Neisseria gonorrhoeae and Chlamydia trachomatis in Coventry, UK. Int J STD AIDS. 2005;16:318–22. doi: 10.1258/0956462053654320. [DOI] [PubMed] [Google Scholar]

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Data Availability Statement

    No data are available.


    Articles from BMJ Open are provided here courtesy of BMJ Publishing Group

    RESOURCES