Abstract
Background
Metabolomics offers novel insights into metabolic alterations in colorectal cancer (CRC), including changes in amino acid profiles. Several studies have reported differences between CRC patients and controls, suggesting potential diagnostic utility.
Purpose
To evaluate evidence on amino acid alterations in CRC and advanced precursors across biological matrices and their potential as non-invasive biomarkers.
Method
A comprehensive search of MEDLINE, EMBASE, and Cochrane CENTRAL identifi ed 77 studies analysing amino acids in faeces, urine, serum, plasma, tissue, and saliva.
Results
Few studies included advanced adenomas and none assessed advanced serrated polyps. Results were heterogeneous across matrices, except for tissue, where most amino acids were consistently upregulated in CRC. Reported diagnostic performance varied widely (AUC 0.28–0.91), with limited external validation.
Conclusion
Overall, amino acids show limited standalone diagnostic value but may enhance multi-metabolitepanels. Standardisation, inclusion of early lesions, and robust validation are essential for future biomarker research.
Supplementary Information
The online version contains supplementary material available at 10.1007/s12094-026-04278-9.
Keywords: Non-invasive biomarker, Colorectal cancer, Sensitivity, Specificity, Amino acids
Introduction
Metabolomics has emerged as a powerful tool in cancer research, enabling the comprehensive profiling of metabolites that reflect cellular processes in health and disease. One of the key insights from this field is that cancer cells, including those in colorectal cancer (CRC), undergo substantial metabolic reprogramming to support uncontrolled growth and proliferation, known as hallmarks of cancer [1]. These alterations include shifts in energy metabolism, biosynthetic demands and redox balance. In CRC, metabolic changes may also be modulated by the gut microbiota, which can influence the production and degradation of the metabolites within the intestinal lumen [2–4].
CRC arises from precursor lesions such as advanced adenomas and advanced serrated polyps through the adenoma-carcinoma (85%) or serrated pathway (15%), respectively [5]. CRC and those precursor lesions are collectively referred to as advanced colorectal neoplasia. Since the five-year survival rate drops from 90% for stage I to 14% for stage IV disease, early detection and removal of CRC and precursor lesions can lower incidence and improve survival [6, 7]. Faecal immunochemical testing (FIT) is widely used in European population-based screening programs to identify individuals at high-risk for CRC or its advanced precursors. However, FIT has limited sensitivity for advanced adenomas and serrated polyps, combined with modest specificity for CRC, leading to missed lesions and a high number of unnecessary colonoscopies [8, 9]. This highlights the need for novel, non-invasive biomarkers that can improve screening accuracy.
Among the many metabolic changes identified in CRC, alterations in amino acid concentrations and pathways have emerged as one of the most frequently reported findings. Differences in amino acid profiles between CRC patients and controls have been reported across matrices such as faeces, serum, and urine, indicating potential as non-invasive biomarkers [10–12]. However, a systematic, cross-matrix comparison of these amino acid alterations is currently lacking. This gap limits the ability to integrate findings across matrices and to assess the robustness and translational relevance of amino acids as reliable biomarkers for advanced colorectal neoplasia.
This systematic review aimed to summarise current evidence on amino acid profile alterations in patients with advanced colorectal neoplasia and controls, aiming to identify neoplasia-specific profiles. In addition, we evaluated the extent of overlap in differential amino acids between matrices and assessed the diagnostic potential of amino acids as non-invasive biomarkers for advanced colorectal neoplasia detection.
Method
The protocol for this systematic review was prospectively registered in the PROSPERO database (CRD42022347826) and findings have been described in accordance with Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) statement.
Information sources and search strategy
Literature search strategies were developed by an information specialist and the first author (FJ and RO) using medical subject heading (MeSH) and text words related to ‘advanced adenoma’, ‘advanced serrated polyp’, ‘colorectal cancer’, ‘amino acids’, and ‘biomarker’. Articles were identified from MEDLINE, EMBASE and Cochrane Central Register of Controlled Trials on 29 November 2022. The full search is presented in Supplementary Table 1. The search was not limited to a specific language or date. Reference lists of included studies or relevant reviews identified through the search were scanned to check for any further eligible publications. An updated search was performed on 22-05-2025. To identify any significant new publications since the last update, a targeted screening of PubMed was conducted for the period from May to December 2025.
Selection process and patient population
The selection process was performed by two independent reviewers (RO and AH). Studies were included if they met the following criteria: (i) studies consisting of patients of 18 years or above with advanced adenoma, advanced serrated polyp or CRC; (ii) the diagnosis of AA, advanced serrated polyp or CRC was based on endoscopy combined with histopathology; (iii) studies on amino acid analysis for diagnostic biomarker discovery. The following definitions were used to classify advanced colorectal neoplasia: advanced adenomas were defined as conventional adenomas measuring ≥ 10 mm in diameter, and/or exhibiting villous histology (≥ 25% villous component), and/or high-grade dysplasia; advanced serrated polyps included sessile serrated lesions or hyperplastic polyps ≥ 10 mm, sessile serrated lesions with dysplasia or traditional serrated adenomas; and CRC was defined as histologically confirmed adenocarcinoma of the colon or rectum, irrespective of stage at diagnosis. A list of included amino acids is presented in Supplementary Table 2. Studies were excluded if they: involved patients with hereditary risk for colorectal neoplasia or patients with polyposis syndromes (e.g., Lynch syndrome, familial adenomatous polyposis, or serrated polyposis syndrome (SPS)); were non-original research or case reports; or lacked information on how controls were classified (e.g., absence of information on diagnostic work-up). Although the initial search strategy was broad and included general biomarker terms, we restricted the review during full-text screening to diagnostic applications to maintain a feasible and coherent scope for the review.
Data extraction and outcomes
From each study we extracted author, year, design, population, demographics, matrix, analytical method, amino acids measured, direction of change, effect size, p value, and histopathological data on advanced adenoma, advanced serrated polyps and CRC. Diagnostic performance (AUC, sensitivity, specificity) was extracted when reported for individual amino acids or panels consisting exclusively of predefined amino acids. If multiple time points or subgroups were reported, we prioritised baseline and predefined subgroup analyses. Data extraction was performed by RO using predefined forms and verified by AH to reduce errors. Missing or additional data were requested from study authors or retrieved from cited sources. Unresolved disagreements were resolved by a third author (SB). Results were synthesised using descriptive and tabular methods. Due to heterogeneity in study design, analytical methods, outcomes, and biospecimen types, no meta-analysis was performed. Findings were summarised narratively by matrix, lesion type, outcome type (e.g. concentration differences, diagnostic performance), and analytical approach (targeted or untargeted). To support interpretation, a forest plot was used to display AUCs, and a visual summary was generated to show the direction and consistency of amino acid changes across studies.
Quality assessment
The methodological quality of the included studies was assessed using the Newcastle–Ottawa Scale (NOS). For case–control studies, the original NOS tool was used, evaluating studies across three domains: selection, comparability, and exposure, with a maximum score of nine points. For cross-sectional studies, the modified version of the NOS as described by Modesti et al. (2016) was applied [13]. This adaptation, specifically developed for non-cohort observational designs, evaluates methodological quality across the domains of selection, comparability, and outcome, with a maximum score of ten points. Both versions are provided in the supplementary material page 3 and 4. Study assessment was performed by RO. In cases requiring clarification, a second author was consulted.
Statistics
If effect size as fold changes were not reported in the original publication, they were calculated manually based on the reported means or medians. For each study, it was clearly indicated whether fold changes were extracted or calculated in the corresponding table. For the study by Bosch et al., raw data were publicly available and used to perform additional statistical analyses [14]. Mann–Whitney U tests were conducted to compare CRC versus controls, advanced adenomas versus controls, and CRC plus advanced adenomas versus controls using RStudio (version 4.4.3).
Results
Overview of included studies
Study selection
The complete screening process is outlined in the PRISMA 2020 flow diagram (Fig. 1). The initial literature search yielded 5961 records. After deduplication, 4190 titles and abstracts were screened, leading to 178 full-text assessments. An updated search identified 2839 additional records, of which 79 were reviewed in full-text, resulting in a total 266 articles undergoing full-text evaluation. Most excluded studies were prognostic or predictive in nature (n = 42), lacking clear definitions of cases and controls (n = 40), or not meeting inclusion criteria for amino acids (n = 33). Additional exclusions were made for studies addressing alternative comparisons (n = 27), language/access issues (n = 5), non-primary research or insufficient data (n = 9), non-human studies (n = 5), and unclear outcomes due to unreported amino acid changes (n = 3). The targeted screening of PubMed did not identify any additional eligible studies that substantially affected the results or conclusions of the present review. In total, 77 articles were included in this systematic review.
Fig. 1.

Preferred reporting items for systematic reviews and meta-analyses (PRISMA) flow diagram. CENTRAL Cochrane Central Register of Controlled Trials
Study characteristics
Details on study characteristics are summarized in Table 1. A total of 77 studies published between 1996 and 2025 were included in this review. The majority were case–control studies, alongside a smaller number of cross-sectional cohort designs. Most studies were conducted in China (n = 35), followed by European countries (n = 15), Japan (n = 8), the United States (n = 7), and South Korea (n = 3). Fewer studies were conducted in Singapore (n = 3), Canada (n = 3), and Iran, Egypt, Nigeria, and Turkey (each n = 1). All studies involved adults with colorectal cancer (77 studies; total CRC cases = 6263), with the number of cases per study ranging from 8 to 437. Six studies included individuals with advanced adenomas (n = 351), with sample sizes ranging from 10 to 159. A total of 56 studies included a healthy control group (n = 6283), with the number of controls per study ranging from 3 to 995. No studies were identified that included adults with advanced serrated polyps. Various biological matrices were described across the included studies, including faeces (n = 18), urine (n = 8), serum (n = 20), plasma (n = 8), tissue (n = 23), saliva (n = 1), serum-derived exosomes (n = 1), and microbiome-derived vesicles (n = 1). Three main categories of analytical techniques were employed across the included studies: mass spectrometry-based approaches (n = 61), nuclear magnetic resonance (NMR) spectroscopy (n = 16), and high-performance liquid chromatography (HPLC; n = 2). Among the mass spectrometry-based methods, liquid chromatography–mass spectrometry (LC–MS/MS; n = 35) and gas chromatography–mass spectrometry (GC–MS; n = 19) were most frequently used, followed by capillary electrophoresis–mass spectrometry (CE-MS; n = 4), flow injection analysis–tandem mass spectrometry (FIA-MS/MS; n = 2), and time-of-flight secondary ion mass spectrometry (TOF–SIMS; n = 1) (Fig. 2). Supplementary Table 3 provides an overview of the distribution of primary analytical methods across different matrices and their frequency of use in targeted versus untargeted studies. Although all included methods were classified under these overarching categories, a range of analytical variants was applied, differing in aspects such as instrumentation and the use of commercial kits. Details of specific analytical configurations and instrumentation are provided in Supplementary Tables 4–6.
Table 1.
Study characteristicsa
| Author [year] refs | Study design, country | Study group | number | Gender, m/f | Age (y) | Diagnosis (case|control) | CRC TNM stage (n) | Matrix |
|---|---|---|---|---|---|---|---|---|
| 0|I|II|III|IV | ||||||||
| Bosch, S. [2022] [14] | Case–control study, the Netherlands | CRC|AA|Ctrl | 12|10|20 | 6/6|9/1|14/6 | 67 [60–71]|71 [70–73]|67 [62–75] b | C|C | no data | Faeces |
| Coker, O. [2022] [10] | Cross-sectional cohort study, China | CRC|Ctrl | 118|128 | 64/54|59/69 | 73.21 ± 10.37|64.03 ± 6.84 c | C|C | no data | Faeces |
| Du, X. [2022] [28] | Case–control, China | CRC|Ctrl | 30|33 | 12/18|13/20 | 56.67|59.27 c | C|C | 0|2|12|14|2 | Faeces |
| Erben, V. [2021] [22] | Cross-sectional cohort study, Germany | CRC + AA|Ctrl | 12 + 159|229 | 103/68|123/106 | 61.1 ± 8.6|60.9 ± 8.0 c | C|C | no data | Faeces, urine and plasma |
| Kim, M. [2020] 20 | Case–control, USA | AA|Ctrl | 102|102 | 62/40|62|40 | 50-59y 17, 60-69y 50, > 70y 35 | 50-59y 18, 60-69y 49, > 70y 35 | C|C | no data | Faeces |
| Kong, C. [2022] [41] | Case–control, China | LO-CRC|Ctrl | 130|97 | 81/49|42/55 | 62.32 ± 7.96 | 61.56 ± 7.35 c | C|C | 0 + I 18|46|52|14 | Faeces |
| EO-CRC|Ctrl | 114|100 | 57/57|47/53 | 39.96 ± 7.01 |39.00 ± 7.31 c | 0 + I 15|28|49|22 | ||||
| Kulecka, M. [2024] [53] | Case–control, Poland | CRC|Ctrl | 40|40 | 20/20|20/20 | ♀: 66[36–82], ♂:67[35–82] | ♀: 68[49–79], ♂:61[50–81] | C|Screening | no data | Faeces |
| Le Gall, G. [2018] [54] | Case–control, UK | Set 1: CRC|Ctrl | 20|20 | 12/8|12/8 | 67[61–72]|67[60–74] c | C|C | Duke 3 A, 7B, 5C | Faeces |
| Set 2: CRC|Ctrl | 30|29 | 21/9|21/9 | 66[60–74]|66[60–74] c | Duke 3 A, 2B, 11C | ||||
| Liang, L. [2024] [40] | Case–control, China | RCC|LCC|Ctrl | 63|79|88 | no data | no data | C|C | no data | Faeces |
| Lin, Y. [2019] [55] | Case–control, China | CRC|Ctrl | 50|50 | sex matched, no data | age matched, no data | C|ME | no data | Faeces |
| CRC|DNT|ANT | 70 | no data | no data | H | No data | Tissue | ||
| Lin, Y. [2016] [24] | Case–control, China | CRC|Ctrl | 68|32 | 36/32|15/17 | 56 ± 21|57 ± 23 | H|ME | 0|I + II 20|25|23 | Faeces |
| Monleon, D.[2009] [56] | Case–control, Spain | CRC|Ctrl | 21|11 | 7/14|2/9 | 65[32–79]|59[31–59)] b | C|C | no data | Faeces |
| Ramzy, A. [2025] [57] | Case–control, Egypt | CRC|Ctrl | 20|20 | 20/0|20/0 | 53.9 ± 4.8|53.5 ± 3.7 | C|BT/C/I | 0|2|1|4|3 | Faeces |
| Sun, X. [2020] [58] | Case–control, China | CRC|Ctrl | 46|38 | 32/14|24/14 | 63.63 ± 11.39|6.85 ± 10.99 c | C|C | no data | Faeces |
| Telleria, O. [2022] [19] | Case–control, Spain | CRC|AA|Ctrl | 40|40|40 | 20/20|20/20|20/20 | 69[38–91]|71[53–86]|76[40–88] b | C|C | no data | Faeces |
| Yachida, S. [2019] [2] | Cross-Sectional Cohort Study, Japan | CRC|AA|Ctrl | 148|30|149 | 88/60|15/15|86/63 | I + II 63.58 ± 8.84, III + IV 59.5 ± 11.46|63.73 ± 8.77 | 64.11 ± 10.9 | C|C | 30|51|29|44|24 | Faeces |
| Yang, Y. [2019] [59] | Case–control, China | CRC|Ctrl | 50|50 | 26/24|17/33 | < 60y: 14, > 60: 36|< 60: 20, > 60: 30 | C|C | 2|9|13|16|10 | Faeces |
| Zhang, Q. [2024] [60] | Cross-Sectional Cohort Study, China | CRC|Ctrl | 245|244 | 153/92|107/137 | 54.10 ± 13.23|49.94 ± 13.56 c | C|C | 0|I + II 123|III-IV 121 | Faeces |
| Kim, D. [2020] [15] | Case–control, Korea | CRC|Ctrl | 32|40 | 20/12|22/18 | 64[45–80]|64.5[49–78] c | C|ME | 1|7|12|9|3 | MEV |
| Yagin, F. d [2023] [61] | ||||||||
| Deng, L. [2019] [62] | Case–control study, Canada | CRC-CAD|CRC-MSKCC|Ctrl | 121|50|171 | 68/59|24/26|100/71 | 67.4 ± 10.9|63.8 ± 12.5|58.9 ± 5.6 c | C|C|C | CAD: 3|16|30|51|21 | Urine |
| MSKCC: 0|14|20|6|10 | ||||||||
| Deng, Y. [2020] [16] | Case–control study, China | CRC|Ctrl | 139|50 | 91/48|28/22 | 63[36–87]|61[47–89] b | H|ME | 8|26|42|50|13 | Urine |
| Deng, W. [2024] [11] | Case–control study, China | CRC|Ctrl | 155|115 | 63/52|145/10 | 64|46 b | H|ME | 0|14|31|48|22 | Urine |
| Kim, E. [2019] [23] | Case–control study, Korea | CRC|AA|Ctrl | 24|36|156 | no data|76/80 | no data|52 [22–76] b | C|C | 24|0|0|0|0 | Urine |
| Ning, W. [2021] [17] | Case–control study, China | CRC|Ctrl | 163|111 | 103/60|69/42 | 66 < 60, 97 > 60,|61 < 60, 50 > 60 | C|ME | 0 | 0 | 65 | 74 | 24 | Urine |
| Wang, Z. [2017] [18] | Case–control study, China | CRC|Ctrl | 23|40 | 11/12|19/21 | 61[27–84]|59[28–78] b | C|NHC + no GI symptoms | only stage I and II | Urine |
| Zhang, L. [2023] [63] | Cross-sectional cohort study, Nigeria | CRC|Ctrl | 169|194 | 95/74|125/69 | 55[19–73]|56[21–74] b | C|C | No data | Urine |
| Bednarz-Misa, I. [2020] [32] | Case–control, Poland | CRC|Ctrl | 137|54 | 72/65|24/30 | 63.6 ± 10.9|60.5 ± 13 c | C|ME/BT | 5|17|52|46|17 | Serum |
| Deng, L. [2016] [64] | Cross-sectional cohort study, USA | CRC|Ctrl | 28|55 | 16/12|25/30 | 55.3[27–86]|52.8[21–74] c | C|C | 0|I + II 3|8|17 | Serum |
| Farshidfar, F. [2016] [65] | Case–control, Canada | CRC|Ctrl | 320|254 | 201/119|148/106 | I 68.6 ± 10.6, II 68.6 ± 12.4, III 64.9 ± 13.1, IV 63.1 ± 11.5| 61.7 ± 9.3 c | C|C | 0|47|60|71|142 | Serum |
| Farshidfar, F. [2018] [66] | Case–control, Canada | CRC|Ctrl | 62|81 | 46/16|58/23 | I 76.9 ± 6.1, II 67.3 ± 9.8, III 62.8 ± 14.8, IV 60.5 ± 9.9 | 60.5 ± 6.7 c | C|C | 0|8|8|8|38 | Serum |
| Gu, J. [2019] [67] | Case–control, China | CRC|Ctrl | 40|38 | 27/13|21/17 | 60[25–82]|55[35–77] b | C|C | 0|7|9|14|14 | Serum |
| Guo, J. [2023] [68] | Case–control, China | CRC|Ctrl | 8|14 | 4/4|7/7 | 46.9 ± 7.7|43.4 ± 6.1 c | C|C | no data | Serum |
| Huang, H. [2002] [69] | Case–control, UK | CRC|Ctrl | 66|37 | 39/27|13/27 | 66[61–73]|69[64–74] e | C|NHC | no data | Serum |
| Ikeda, A. [2011] [70] | Case–control, Japan | CRC|Ctrl | 12|12 | 8/4|5/7 | 71.3[63–83]|58.5[45–74] b | C|BT/C/I | 0|3|4|5|0 | Serum |
| Leichtle, A. [2012] [29] | Case–control, Germany | CRC|Ctrl | 59|58 | 37/22|26/32 | 59 [45–90]|58 [38–75] b | C|BT/ME | 0|5|20|16 | Serum |
| Li, J. [2019] [12] | Case–control, China | Screening: CRC|Ctrl | 120|120 | 73/47|73/47 | 63.1 ± 13.1|61.7 ± 12.2 c | H|ME | 0|11|35|62|12 | Serum |
| Validation: CRC|Ctrl | 437|580 | 252/185|298/282 | 59.1 ± 12.5|58.1 ± 11.4 | 0|76|126|153|82 | ||||
| Long, Y. [2017] [71] | Case–control, China | CRC | Ctrl | 30|30 | 18/12|18/12 | 53.97 ± 13.46|55.23 ± 10.46 c | H|NHC | 0|I + II 20|25|23 | Serum |
| Nishiumi, S. [2012] [27] | Case–control, Japan | Training: CRC|Ctrl | 60|60 | 39/21|39/21 | 67.7[36–88]|64.5[39–88] c | H|BT/C/I | 12|12|12|12|12 | Serum |
| Validation: CRC|Ctrl | 59|63 | 30/29|32/31 | 64.8[31–84]|62.8[47–73] c | 15|11|3|11|19 | Serum | |||
| Qiu, Y. [2009] [72] | Case–control, China | CRC|Ctrl | 64|65 | 35/29|34/31 | 59[42–74]|55[42–69] b | H|ME | 0|9|27|20|8 | Serum |
| Tan, B. [2013] [73] | Case–control, China | CRC|Ctrl | 62|62 | 34/28|28/34 | 60.1 [24 − 82]|59.4 [31 − 75] c | C|ME | 0|16|25|17|4 | Serum |
| Tevini, J. [2022] [21] | Case–control, Austria | Training: CRC|AA|Ctrl | 18|28|36 | 11/7|14/14|18/18 | 67 ± 12|60 ± 10|53 ± 8 | C|C | no data | Serum |
| Validation: CRC|Ctrl | 48|29 | 31/17|3/26 | 69 ± 10|68 ± 7 | |||||
| Validation: AA|Ctrl | 48|28 | 26/22|28/0 | 66 ± 10|66 ± 5 | |||||
| Tristán, A. [2023] [26] | Case–control, Spain | CRC|Ctrl | 57|26 | 29/28|14/12 | 60.0 ± 5.33|65.5 ± 6.83 c | C|ME | 0|0|0|0|57 | Serum |
| Uchiyama, K. [2017] [39] | Case–control, Japan | CRC|Ctrl | 56|60 | 25/28|30/30 | I 70.4 ± 8.2, II 69.3 ± 9.6, IIIa 71 ± 6.7, IIIb 71.3 ± 10.4, IV 70.7 ± 10|67.7 ± 9.2 c | C|C | 0|14|14|14|14 | Serum |
| Wu, J. [2020] [74] | Case–control, China | CC|RC|Ctrl | 22|23|45 | 15/7|16/7|31/14 | 66.49[49–84]|64.41[49–84]|68.48[54–80]c | C|BT | no data | Serum |
| Zhu, J. [2014] [75] | Cross-sectional cohort study, USA | CRC|Ctrl | 66|92 | 30/36|45/47 | 58[27–88]|57[18–80] b | C|C | 0|I + II 21|17|28 | Serum |
| Eylem, C. [2020] [76] | Case–control, Turkey | CRC|Ctrl | 8|8 | 6/2|no data | 56.5[53–71]|no data b | H|ME | 0|2|2|1|3 | Serum exosomes |
| Coradduzza, D. [2022] [77] | Case–control, Italy | CRC|Ctrl | 50|52 | 33/17|no data | 7.74 ± 10.44|55.42 ± 5.14 c | H|ME | 1|10|13|17|7|2 | Plasma |
| Geijsen, A. [2019] [78] | Case–control, Germany + Austria | Discovery: CRC|Ctrl | 180|153 | 114/66|59/94 | 66.0[58.0–73.0]|51.0[42.0–63.0] e | H|NHC | 7|34|66|47|25 | Plasma |
| Replication: CRC|Ctrl | 88|200 | 60/28|130/70 | 70.0[60.0–76.0]|64.0[57.0–74.0] e | 0|30|17|18|12 | ||||
| Miyagi, Y. [2011] [30] | Case–control, Japan | CRC|Ctrl | 199|995 | 126/73|570/425 | CRC 63.7 ± 9.5|62.4 ± 9.5 c | C|ME | 8 | 63 | 48 | 59 | 19 | Plasma |
| Nishiumi, S. [2017] [31] | Case–control, Japan | CRC|Ctrl | 282|291 | 170/112|178/113 | 67 ± 9.02|66.8 ± 7.94 c | C|CRC screening | 79|80|123|0|0 | Plasma |
| Okamoto, N.[2009] [79] | Case–control, Japan | CRC|Ctrl | 103|62 | 42/20|52/51 | 62.7 ± 9.5|57.6 ± 6.1 c | H|ME | 2|9|22|22|6 | Plasma |
| Rodriguez-Tomas, E. [2021] [80] | Case–control, Spain | RC|Ctrl | 32|48 | 19/29|22/10 | 67.7 ± 9.5|41.9 ± 10.0 c | H|ME | 0|0|5|27|0 | Plasma |
| Sun, Y. [2024] [81] | Case–control, China | CRC|Ctrl | 111|119 | 64/47|52/67 | 61.90 ± 11.49|43.76 ± 11.60 | C|C | 3|21|17|36|18 | Plasma |
| Arima, K. [2020] [82] | Case–control, paired, USA | CRC + paired normal | 11 | no data | no data | H | no data | Tissue |
| Cai, Y. [2020] [83] | Case–control, USA | CRC|normal f | 39|39 | 20/19|27/12 | 69.5 ± 8.5|67.4 ± 12.4 c | H | 0|13|14|12|0 | Tissue |
| Cai, R. [2025] [84] | Case–control, paired, China | CRC + paired normal | 106 | 51/55 | < 60: 44|≥ 60: 62 | H | 0|6|19|43|32 | Tissue |
| Chan, E. [2009] [85] | Case–control, paired, Singapore | CRC + paired normal | 31 | 18/13 | 67 ± 13 c | H | 0|3|10|13|5 | Tissue |
| Cho, K. [2021] [86] | Case–control, paired, Korea | CRC + paired normal | 90 | 45/45 | no data | H | no data | Tissue |
| Denkert, C. [2008] [87] | Case–control, Germany | CRC|Ctrl g | 27|18 | 12/15 | no data | H | 0|3|9|14|1 | Tissue |
| Feizi, H. [2025] [88] | Case–control, Iran | CRC|Ctrl | 14|20 | 7/7|10/10 | 40-49y 2, 50-59y 1, 60-69y 4, 70-79y 7 | 40-49y 2, 50-59y 4, 60-69y 6, 70-79y 8 | H|H | no data | Tissue |
| Gao, P. [2016] [89] | Case–control, China | CRC + paired normal | 11 | no data | no data | H | no data | Tissue |
| Jiménez, B. [2013] [90] | Case–control, UK | CRC + paired normal | 83|87 h | 10/16 | 72[26–87] b | H | 0|2|10|14|0 | Tissue |
| Kinross, J. [2017] [91] | Case–control, paired, UK | CRC + paired normal | 18 | 10/8 | 76[55–85] b | H | No data | Tissue |
| Long, Z. [2020] [92] | Case–control, paired, China | CRC + paired normal | 51 | 24/26 | 57[22–79] b | H | 0|4|21|15|4 | Tissue |
| Lv, W. [2020] [93] | Case–control, paired, China | CRC|DNT|ANT | 22 | 13/9 | ♂ 64.46 ± 3.49, ♀ 60.44 ± 4.00 c | H | No data | Tissue |
| Mal, M. [2012] [94] | Case–control, paired, Singapore | CRC + paired normal | 31 | 18/13 | 67 ± 13 c | H | 0|4|10|13|5 | Tissue |
| Manna, S. [2014] [95] | Case–control, paired, USA | CRC + paired normal | 39 | 19/20 | 69 ± 15.3 b | H | 0|I + II 21|III + IV 18 | Tissue |
| Moreno, A. [1996] [96] | Case–control, partly paired, Spain | CRC + paired normal | 16|10 | 11/5 | 65 ± 11 c | H | 0|5|4|6|1 | Tissue |
| Ning, W. [2017] [25] | Case–control, paired, China | CRC + paired normal | 20 | 13/7 | 8 < 60 years 12 > 60 years | H | 0|0|8|9|3 | Tissue |
| Phua, L.C. [2014] [97] | Case–control, paired, Singapore | CRC + paired normal | 11 | 7/4 | 64.5[56–80] c | H | 0|0|6|5|0 | Tissue |
| Qiu, Y. [2014] [98] | Case–control, USA + China | [Set 1] CRC + partly paired normal | 85|55 | 49/36 | 57[31–79] b | H | 0|7|35|37|6 | Tissue |
| [Set 2] CRC + paired normal | 23 | 10/13 | 61[40–75] b | 0|3|9|10|1 | ||||
| [Set 3] CRC + paired normal | 65 | 43/22 | 61[34–84] b | 0|11|22|21|11 | ||||
| [Set 4] CRC + paired normal | 29|27 | 8/12 | 59[35–81] b | 1|2|2|14|1 | ||||
| Rao, J. [2024] [99] | Case–control, paired, China | CRC + paired normal | 10 | 8/2 | 65[34–85] b | H | 0|1|2|6|1 | Tissue |
| Wang, H. [2013] [100] | Case–control, partly paired, China | RC|Ctrl i | 127|43 | 69/58|16/27 | 55[28–86]|56[35–85] e | H | 0|35|37|37|18 | Tissue |
| Wang, Q. [2020] [101] | Case–control, paired, China | CRC + paired normal | 17 | No data | No data | H | No data | Tissue |
| Zha, H. [2018] [102] | Case–control, paired, China | CRC + paired normal | 18 | 9/9 | 61.35 ± 9.52 2 | H | No data | Tissue |
| Su, H. [2025] [103] | Case–control, China | CRC|Ctrl | 35|36 | 15/20|15/21 | 51.51 ± 11.47|41.39 ± 7.41 c | C|C | 0|7|12|10|6 | Saliva |
aCRC colorectal cancer, AA advanced adenoma, Ctrl control, LO-CRC late onset colorectal cancer (≥ 50 years), EO-CRC early onset colorectal cancer (< 50 years), CC colon cancer, CRC-CAD Colorectal cancer patients from the Edmonton region in Canada, CRC-MSKCC Colorectal cancer patients from the Memorial Sloan Kettering Cancer Centre, RC rectal cancer, DNT Distant normal issue, ANT adjacent noncancer tissues, H histopathology, C colonoscopy, ME medical examination, MEV microbial derived vesicles, BT Blood tests, I imaging, NHC no history of cancer, LCC Left sided colon cancer, RCC Right sided colon cancer
b Median ± SD or [range]. c Mean(± SD) or [range]. d Yagin et al. performed a secondary analysis of publicly available data from Kim et al. to explore its diagnostic utility. e Median[IQR]. f Normal tissue was obtained from sites distant to the tumour at the resection margin, but not from the same CRC patients included in the primary comparison group. g Cases with paired normal and carcinoma tissue n = 15. h Derived from 26 patients. i Cases with paired normal and carcinoma tissue n = 43
Fig. 2.

Distribution of analytical techniques used for amino acid measurement. Pie chart illustrating the distribution of analytical methods applied across the included studies. A detailed breakdown of mass spectrometry-based techniques is provided in the adjacent inset. The number following each technique indicates the number of studies that employed the respective method. The total number of methods exceeds the number of included studies, as two studies employed two distinct analytical approaches. CE-MS Capillary Electrophoresis–Mass Spectrometry; FIA-MS/MS Flow Injection; Analysis–Tandem Mass Spectrometry; GC–MS Gas Chromatography–Mass Spectrometry; HPLC High-Performance Liquid Chromatography; LC–MS/MS Liquid Chromatography–Tandem Mass Spectrometry; NMR spectroscopy Nuclear Magnetic Resonance Spectroscopy; TOF–SIMS Time-of-Flight Secondary Ion Mass Spectrometry
Quality assessment
The NOS was applied to 70 case–control studies and seven cross-sectional studies (Supplementary Tables 7 and 8). In most studies, cases were clearly defined and diagnosed using colonoscopy. However, in 13 studies (17%), while CRC or polyps were confirmed endoscopically, the histological classification was incomplete, with unclear distinction between advanced and non-advanced adenomas, or between adenomas and serrated polyps. Therefore, only the CRC versus control comparison in these studies was included in the present review. In 27 case–control studies (39%), controls were not colonoscopy-confirmed but identified based on alternative criteria, including absence of symptoms, normal clinical assessment, or lack of cancer history (Table 1). Although this introduces a potential risk of undetected lesions, these individuals were considered sufficiently low-risk to be included in CRC versus control comparisons. Fifty-four studies (70%) adjusted for age, and 51 studies (66%) for additional confounders including, sex, BMI, ethnicity, or smoking status. Metabolomic and amino acid analyses were consistently performed between cases and controls. Exclusion criteria were clearly reported in all studies, however, no study met the NOS non-response criterium. Overall, methodological quality ranged from 6 to 8 of 9 stars.
Differential amino acid profiles
Amino acid profiles in colorectal cancer versus controls
Supplementary Table 4 summarises the full study findings for the CRC versus controls comparison. A total of 17 studies investigated faecal amino acid profiles, encompassing 21 cohorts (CRC patients: n = 1335; controls: n = 1170). The majority of studies (12 out of 17; 71%) employed mass spectrometry, including LC–MS (n = 7), GC–MS (n = 4), and CE–MS (n = 1). Additionally, four studies (24%) used NMR spectroscopy, and one study applied HPLC. For nearly all amino acids, most studies found no significant differences in faecal concentrations between CRC patients and controls. Nonetheless, with the exception of four amino acids, at least one study per metabolite report a significant increase in CRC, particularly for alanine, phenylalanine, and proline (≥ 5 studies) (Fig. 3a, Supplementary Table 4). Nine amino acids were reported as significantly decreased in CRC patients in some studies, however, non-significant findings were more common across the literature. Due to these inconsistencies, no clear CRC-specific faecal amino acid pattern could be identified. This lack of consistency persisted when we analysed targeted and untargeted studies separately, with most studies again reporting non-significant differences (Supplementary Fig. 1a). One untargeted study specifically analysed microbial extracellular vesicles (MEVs) isolated from faeces and identified elevated levels of leucine, isoleucine, alanine, and lysine in CRC patients, which partly align with results from faecal studies [15].
Fig. 3.

Directional changes in amino acid concentrations across matrices and comparisons, based on both targeted and untargeted approaches. Panels show results for a CRC versus controls, b advanced adenoma patients versus controls, and c advanced neoplasia patients versus controls. For each comparison, a matrix-specific summary is shown for the 20 amino acids included in this review. The Y-axis lists the amino acids; the X-axis indicates the biological matrices. Each circle reflects the number of studies reporting a significant increase (red), decrease (blue), or no significant difference (ND, grey) in amino acid levels. Circle size corresponds to the number of studies, with larger circles indicating greater consistency. Numbers within the circles denote how many studies reported the respective outcome out of the total number of studies assessing that amino acid in that matrix. Deng et al. (2024) reported L- and D-enantiomers separately; only amino acids showing significant changes in both forms were included for consistency
Serum amino acid profiles showed a similar degree of inconsistency as observed in faecal samples. However, amino acids in serum were more frequently found to be in CRC patients. In total, 20 studies investigated serum samples, encompassing 28 cohorts (CRC patients: n = 1764; controls: n = 1750). Mass spectrometry was the most commonly used analytical technique, applied in 18 of the 20 studies (90%), including LC–MS (n = 8), GC–MS (n = 7), FIA-MS (n = 2) and CE–MS (n = 1). NMR spectroscopy was used in three studies (15%), while one study employed HPLC. For each of the 20 amino acids, at least one study reported reduced concentrations in CRC. Alanine, histidine, lysine, proline, tryptophan, and tyrosine were more often found to be downregulated than non-differential, although the difference was marginal. For 16 amino acids, increased levels were also described; glutamate and isoleucine were elevated in six studies, whereas seven other studies found no significant difference for these same metabolites. When analysing targeted and untargeted studies separately overall patterns remained largely consistent (Supplementary Fig. 1). However, targeted studies more frequently identified elevated levels of aspartic acid, glutamate, and isoleucine. In contrast, amino acids that were more commonly downregulated overall, including alanine, lysine, proline, tryptophan, and tyrosine, were more often classified as non-differential in the targeted analyses.
Seven studies investigated plasma amino acid profiles (eight cohorts, CRC patients: n = 1045; controls: n = 1920), all employing mass spectrometry (LC–MS n = 5, GC–MS n = 2). Overall, most amino acids were reported as either decreased or non-differential between CRC patients and controls (Fig. 3a). Notably, cysteine, leucine, methionine, tyrosine, and valine were consistently found to be downregulated in CRC patients across all studies. Stratification by analytical approach (targeted vs. untargeted) did not reveal substantial differences in overall findings (Supplementary Fig. 1).
Urine samples were analysed in six studies (six cohorts, CRC patients: n = 696; controls: n = 687), with mass spectrometry being the predominant technique (5/6 studies; 83%), including LC–MS (n = 4) and CE–MS (n = 1). NMR spectroscopy was applied in one study (17%). Most amino acids were reported as either non-differential or differentially altered in only one or two studies (Fig. 3a). Compared to other matrices, urine-based studies revealed more distinct patterns by analytical approach: targeted studies mainly reported no significant differences, while untargeted studies identified various altered amino acids (Supplementary Fig. 1). However, none of the three untargeted studies identified the same amino acids as differential [16–18]. This finding should be interpreted with caution, as selective reporting of only significant metabolites in untargeted studies may have influenced comparability.
Tissue-based analyses, comprising 23 studies (29 cohorts, CRC patients: n = 1101; controls: n = 1076), revealed the most consistent profile across all matrices, with all amino acids identified as upregulated in CRC tissue relative to normal mucosa (Fig. 3a). Only a small number of studies reported downregulated or non-differential levels. Glutamine was the exception, showing an equal number of studies reporting up- and downregulation, and one study reporting no significant difference. Several amino acids, including aspartic acid, cysteine, histidine, isoleucine, lysine, methionine, serine, threonine, and tryptophan, were consistently found to be significantly increased in all studies that assessed them. Similar to the other matrices, mass spectrometry was the predominant analytical technique, used in 16 of 23 studies (70%), including LC–MS (n = 7), GC–MS (n = 7), TOF–SIMS (n = 1), and CE–MS (n = 1). NMR spectroscopy was employed in 8 studies (35%).
Only one study investigated saliva samples using untargeted LC–MS and found decreased levels of arginine, aspartic acid, histidine, methionine, phenylalanine, serine, and tryptophan in 35 CRC patients compared to 36 controls. While some overlap with results from plasma and untargeted serum analyses, the overall pattern remained inconsistent and non-specific. Cysteine showed a relatively distinct trend, being consistently downregulated in urine, serum, and plasma, elevated in tissue, and largely non-differential in faecal samples. However, this observation is based on a limited number of studies per matrix and should be interpreted with caution.
Amino acid profiles in advanced adenoma versus controls
Supplementary Table 5 shows an overview of all findings in the advanced adenoma versus controls comparison. Four studies, comprising five independent cohorts, examined amino acid profiles in faecal (three studies, advanced adenoma patients: n = 154, controls: n = 162) and serum (one study comprising two cohorts, advanced adenoma patients: n = 76, controls: n = 64) samples from individuals with advanced adenoma compared to controls. Overall, most studies did not report significant differences in amino acid profiles, although a few individual amino acids were found to differ significantly (Fig. 3b, Supplementary Table 5). In one faecal cohort, targeted HPLC analysis showed elevated levels of alanine, glutamate, glycine, proline, serine, threonine, and valine in advanced adenoma patients compared to controls [14]. However, these findings were not in line with two untargeted studies, using UPLC-MS, which found no significant differences in the same amino acids [19, 20]. Similarly, in a targeted serum-based study using LC–MS in two independent cohorts, results for aspartic acid and serine were inconsistent: one cohort showed elevated levels in advanced adenoma patients, while the other reported no significant differences [21]. For glycine, opposing trends were observed, with upregulation in one cohort and downregulation in the other.
Amino acid profiles in advanced neoplasia versus controls
Seven studies assessed amino acid profiles in biological samples from individuals with CRC and advanced adenomas, collectively referred to as patients with advanced neoplasia, compared to controls. These included faecal samples (five studies, advanced neoplasia patients: n = 303; controls: n = 438), urine (two studies, advanced neoplasia patients: n = 219; controls: n = 385), and plasma (one study, advanced neoplasia patients: n = 159; controls: n = 229). All outcomes for the advanced neoplasia versus controls comparison are summarised in Supplementary Table 6. Overall, amino acid levels in faecal and plasma samples were predominantly non-differential between groups (Fig. 3c). In contrast, most urinary amino acids were decreased in advanced neoplasia patients, based on a targeted LC–MS approach [22]. However, inconsistent results were found for alanine, proline, and valine when compared to findings from an untargeted NMR-based study [22, 23]. Notably, threonine was found to be downregulated in both urine and plasma within the same study applying targeted LC–MS/MS [22]. Although certain amino acids were consistently reported as non-differential across sample types, the findings did not point to a clear amino acid signature for advanced neoplasia.
Diagnostic potential
Several studies evaluated the diagnostic potential of individual amino acids for detecting CRC in various biological matrices: faeces (n = 3), urine (n = 1), serum (n = 6), plasma (n = 2), and tissue (n = 2). The diagnostic performance of individual amino acids across matrices is detailed in Supplementary Table 9, with most studies reporting area under the curve (AUC) values derived from ROC curve analysis. An overview of these AUCs is illustrated in Fig. 4. AUC values varied widely, ranging from poor to good discriminative ability depending on the matrix and amino acid. The highest values were observed in the faecal analysis by Lin et al., where alanine, glutamate, glutamine, isoleucine, leucine, proline, and valine achieved AUCs between 0.84 and 0.91 for the detection of stage I and II CRC [24]. Elevated AUCs were also described for tissue-based aspartic acid (AUC 0.89), serum glutamine (AUC 0.81), and urinary alanine (AUC 0.81) [11, 25, 26]. While most findings lacked validation, tissue-based aspartic acid was confirmed in an independent test set, though this was based on a limited sample size [25]. Additionally, Kim et al. reported a validated AUC of 0.783 (95% CI 0.714–0.839) for urinary alanine in detecting CRC and advanced adenomas [23]. No single amino acid consistently demonstrated good diagnostic performance (AUC ≥ 0.80) across multiple matrices. In many studies, multivariate diagnostic panels were constructed using combinations of amino acids and other metabolites. As these panels did not consist exclusively of amino acids, they fall outside the scope of this review and are not further discussed.
Fig. 4.

Overview of AUC values for amino acids by sample matrix for CRC detection. Forest plot displaying the reported AUC values for each amino acid in the comparison between CRC and controls. Each row represents a unique amino acid and biological matrix, showing the estimated AUC and its corresponding confidence interval, as reported in the referenced study (author and year in coloured y-axis labels). For some studies, no confidence interval was provided and only the AUC is shown. The colour of the data points reflects the matrix type and corresponds to the legend. MEV microbial extracellular vesicles
Discussion
This systematic review provides an overview of the literature on amino acid profiles associated with advanced colorectal neoplasia. Overall, no consistent advanced neoplasia-specific amino acid signature was identified within or across matrices. Most amino acids were reported as non-differential in the majority of studies, and significant results were often conflicting, with the exception of tissue, where a consistent trend towards elevated amino acid levels in CRC tissue was observed. Diagnostic performance of individual amino acids ranged widely (AUC 0.28–0.91), with the highest values originating from a faecal-based study. A key observation is the substantial methodological heterogeneity across studies, in both analytical techniques and data processing methods, which likely contributes to the observed variability. In addition, studies addressing early lesion detection remain scarce, highlighting a clear gap in the literature regarding the biomarker potential of amino acids in early stage disease.
Most included studies described the diagnostic performance of individual amino acids as part of broader metabolomics analyses. Only four out of twenty studies describing diagnostic performance employed external validation; in two of these, fewer than ten CRC patients were included, while the remaining two involved 30 and 59 patients with CRC. None of these studies reported an AUC exceeding 0.80 [18, 23, 25, 27]. Internal validation was performed in three studies [14, 28, 29], whereas no form of validation was applied in the remaining 13, limiting the generalisability of findings and increasing the risk of overestimating diagnostic performance. Moreover, three studies included larger CRC cohorts (up to 250 patients) but described poor diagnostic performance (AUC < 0.66) [30–32]. In addition to sample size and validation, the analytical approach (targeted vs. untargeted) also affects the robustness of findings. Half of the studies applied an untargeted approach without subsequent analytical confirmation of the amino acids using a targeted method, which may lead to uncertainty regarding the reliability of the identified metabolites. Furthermore, in 15 studies evaluating diagnostic biomarker panels, the best-performing models combined amino acids with other metabolites or proteins, outperforming amino acid–only panels. This may be explained by the fact that such panels capture a broader spectrum of tumour-specific metabolic alterations, reflecting coordinated changes across interconnected pathways, including amino acid metabolism, lipid synthesis, and host–microbiome interactions [1].
When examining consistency within individual biological matrices, CRC tissue showed a notably consistent pattern of increased amino acid concentrations across multiple studies. This finding aligns with the Warburg effect, the metabolic shift of tumour cells towards aerobic glycolysis, in which increased anabolic demands are supported by amino acids acting as carbon and nitrogen sources for biosynthesis [33]. Across studies, glutamate, glycine, and phenylalanine were most frequently elevated. Increased glutamate levels are consistent with enhanced glutamine dependency, a well-established feature of tumour metabolism, whereby glutamine is converted to glutamate and subsequently fuels the tricarboxylic acid (TCA) cycle and biosynthetic processes [33, 34]. Moreover, glutamate is strongly related to 2-oxoglutarate, the latter being an essential metabolite in the TCA cycle [35]. Elevated glycine aligns with increased one-carbon metabolism, which supplies one-carbon units for nucleotide synthesis and methylation reactions essential for DNA replication and cell division [36]. In addition, glycine and glutamate, together with cysteine, support glutathione synthesis and the detoxification of reactive oxygen species in tumour cells [36]. Phenylalanine elevation may reflect increased protein synthesis and turnover associated with rapid tumour growth, in addition to its involvement as a precursor in nonessential amino acid synthesis [36]. Together, these alterations highlight metabolic adaptations that support tumour proliferation and provide mechanistic insight into the consistent amino acid enrichment observed in CRC tissue.
In plasma, leucine and valine were consistently downregulated in all studies that assessed them, suggesting a potential role for these branched-chain amino acids in tumour-associated metabolic reprogramming. Leucine and valine are key substrates in energy production and protein synthesis, but are also involved in cell signalling pathways that regulate growth and proliferation, such as mTOR activation [37]. Their depletion may reflect increased uptake by proliferating cancer cells or altered systemic metabolism. Interestingly, despite the physiological similarity between plasma and serum, the amino acids reported as differentially abundant showed limited overlap, with serum studies more often reporting non-significant findings. This aligns with previous observations that serum generally contains higher and more variable amino acid concentrations [38].
The observed discrepancies in amino acid alterations within and between matrices may be explained by several underlying factors. First, tumour-specific characteristics, such as disease stage, tumour location, and age of onset, have been associated with variation in amino acid profiles, possibly due to altered gut microbiota composition [2, 39–42]. In addition, differences in amino acid profiles may arise from inherent biological variation between matrices. These include matrix-specific metabolic activity, differences in host–microbiota interactions, and variable amino acid stability or degradation during sample collection and processing [43–45]. Furthermore, although lifestyle-related factors, particularly diet, can significantly affect amino acid concentrations across sample types, most included studies rarely accounted for lifestyle variables [4, 46, 47]. While tumour-related and matrix-specific biological factors likely contribute to genuine variability in amino acid profiles, the inconsistent consideration of diet and variation in sample processing across studies suggests that a substantial proportion of the observed discrepancies may be methodological rather than biological in origin. Future studies should incorporate detailed dietary assessments and standardised sampling conditions (e.g. fasting versus non-fasting) to reduce this source of confounding.
Variation in analytical methods across studies likely represents an additional contributor to the inconsistencies observed in amino acid profiles. Although this review focused on the direction of amino acid alterations rather than absolute concentrations, differences in analytical sensitivity and dynamic range may still influence whether subtle group-level changes are detected. NMR, HPLC, and various mass spectrometry (MS) platforms were used, each differing in sensitivity, selectivity, and quantification accuracy. Although one study reported strong correlations between NMR and LC–MS/MS for most amino acids, systematic differences in absolute concentrations were observed, and group-level differences were not consistently detected across both methods [48]. HPLC remains a commonly used technique in amino acid analysis, yet coupling it to MS can substantially enhance sensitivity, especially in complex matrices such as faeces [49]. Even within MS-based approaches, methodological variation (e.g., GC–MS vs. LC–MS or CE–MS) may influence which amino acids are reliably quantified or detected [50, 51]. Variability in targeted versus untargeted approaches may further influence detection sensitivity and coverage [52], however, discrepancies in amino acid profiles were observed even among studies applying comparable analytical strategies. In addition, studies differed in their statistical approaches, including the use of univariate versus multivariate methods, correction for multiple testing, and criteria for reporting significance. Together, these methodological differences may contribute to the lack of consistency in amino acid profiles across studies.
A key strength of this review is its comprehensive scope, combining an extensive literature search with a structured comparison of amino acid profiles across multiple biological matrices. By evaluating findings from faeces, urine, serum, plasma, tissue and saliva side by side, this review provides a broad overview of matrix-specific trends and inconsistencies. In addition, diagnostic potential was assessed where applicable, offering clinically relevant insight beyond descriptive profiling.
Limitations
This review has several limitations. First, a substantial methodological heterogeneity across studies, including differences in analytical techniques, statistical approaches, and study design, precluded formal meta-analysis and limited comparability. In addition, several included studies had small sample sizes, hampering power of their findings. Potential publication bias should also be considered. Untargeted metabolomics studies frequently reported only statistically significant results, while non-significant amino acids were often omitted. This selective reporting may have led to an overestimation of differential findings. To mitigate this, targeted and untargeted studies were analysed separately. Moreover, unaccounted heterogeneity related to pre-analytical factors, microbiota composition, and tumour characteristics may also have contributed to bias.
Future perspectives
Future research should prioritise standardisation of analytical protocols to improve comparability between studies, as well as focus on early disease stages, particularly advanced adenomas and advanced serrated polyps. Identifying biomarkers that detect precancerous lesions remains critical for preventing their progression to CRC by endoscopic polypectomy. Importantly, rigorous validation strategies, including external validation, are essential to assess the true clinical utility of candidate biomarkers. Given that diagnostic performance often declines upon external validation, larger, well-characterised cohorts and harmonised methodologies will be key to advancing the field.
Conclusion
In conclusion, individual amino acids do not appear to have sufficient diagnostic accuracy to serve as standalone biomarkers for CRC. Instead, amino acids profiling may be more informative when incorporated in multivariate panels that include other metabolite classes as well. Although tissue-based studies show the most consistent amino acid alterations, their limited suitability for non-invasive screening highlights the importance of translating these metabolic insights into clinically applicable biomarker panels.
Supplementary Information
Below is the link to the electronic supplementary material.
Author contributions
Study conception and design: RO, SB, ES, ED, NdB. Search strategy development: FJ, RO. Literature screening and selection: RO, AH. Data extraction: RO, AH. Quality assessment/risk of bias assessment: RO. Data analysis/synthesis: RO. Manuscript drafting: RO. All authors critically revised and approved the manuscript.
Funding
The authors did not receive support from any organization for the submitted work.
Data availability
The primary data supporting the findings of this study are included in the article and provided in Appendix B. Additional data may be obtained from the corresponding author upon reasonable request.
Declarations
Conflict of interest
NdB has served as a speaker for AbbVie and MSD and has served as a consultant and/or principal investigator for TEVA Pharma BV and Takeda. He has received a research grant (unrestricted) from Dr. Falk, TEVA PharmaBV, Dutch Digestive Foundation (MLDS) and Takeda. All outside the submitted work. All other authors declare no conflicts of interest.
Research involving human participants and/or animals
This article is a systematic review that synthesizes data from previously published studies. All included studies involving human participants were conducted in accordance with the ethical standards of the respective institutional and national research committees, and with the 1964 Helsinki Declaration and its later amendments. No new studies with human participants or animals were conducted by the authors.
Informed consent
This systematic review does not involve any new studies with human participants performed by the authors; therefore, informed consent was not applicable.
Footnotes
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
References
- 1.Pavlova NN, Zhu JJ, Thompson CB. The hallmarks of cancer metabolism: still emerging. Cell Metab. 2022;34(3):355–77. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.Yachida S, Mizutani S, Shiroma H, et al. Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer. Nat Med. 2019;25(6):968. [DOI] [PubMed] [Google Scholar]
- 3.Thomas AM, Manghi P, Asnicar F, et al. Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation. Nat Med. 2019;25(12):1948. [DOI] [PubMed] [Google Scholar]
- 4.Song MY, Chan AT, Sun J. Influence of the gut microbiome, diet, and environment on risk of colorectal cancer. Gastroenterology. 2020;158(2):322–40. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Nguyen LH, Goel A, Chung DC. Pathways of colorectal carcinogenesis. Gastroenterology. 2020;158(2):291–302. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Siegel RL, Miller KD, Fuchs HE, Jemal A. Cancer statistics, 2021. Ca-Cancer J Clin. 2021;71(1):7–33. [DOI] [PubMed] [Google Scholar]
- 7.Bretthauer M, Loberg M, Wieszczy P, et al. Effect of colonoscopy screening on risks of colorectal cancer and related death. N Engl J Med. 2022;387(17):1547–56. [DOI] [PubMed] [Google Scholar]
- 8.Tan SS, Oostenbrink JB, Rutten FFH. Costs and prices of healthcare services in the Netherlands: a micro costing approach based on case-vignettes: institute for medical technology assessment Erasmus MC Rotterdam. Health Care Manag Sci. 2006. 10.1007/s10729-006-9096-y. [Google Scholar]
- 9.Lin JS, Perdue LA, Henrikson NB, Bean SI, Blasi PR. Screening for colorectal cancer: updated evidence report and systematic review for the US preventive services task force (vol 325, pg 1978, 2021). JAMA J Am Med Assoc. 2021;326(3):279. [Google Scholar]
- 10.Coker OO, Liu C, Wu WKK, et al. Altered gut metabolites and microbiota interactions are implicated in colorectal carcinogenesis and can be non-invasive diagnostic biomarkers. Microbiome. 2022;10(1):35. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Deng WC, Ye CD, Wang W, et al. LC-MS analysis of chiral amino acids in human urine reveals D-amino acids as potential biomarkers for colorectal cancer. J Chromatogr B. 2024. 10.1016/j.jchromb.2024.124270. [DOI] [PubMed] [Google Scholar]
- 12.Li JK, Li J, Wang H, Qi LW, Zhu YM, Lai MD. Tyrosine and glutamine-leucine are metabolic markers of early-stage colorectal cancers. Gastroenterology. 2019;157(1):257. [DOI] [PubMed] [Google Scholar]
- 13.Modesti PA, Reboldi G, Cappuccio FP, et al. Panethnic differences in blood pressure in Europe: a systematic review and meta-analysis. PLoS ONE. 2016;11(1):e0147601. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Bosch S, Acharjee A, Quraishi MN, et al. Integration of stool microbiota, proteome and amino acid profiles to discriminate patients with adenomas and colorectal cancer. Gut Microbes. 2022;14(1):2139979. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Kim DJ, Yang J, Seo H, et al. Colorectal cancer diagnostic model utilizing metagenomic and metabolomic data of stool microbial extracellular vesicles. Sci Rep. 2020. 10.1038/s41598-020-59529-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Deng Y, Yao HS, Chen W, et al. Profiling of polar urine metabolite extracts from Chinese colorectal cancer patients to screen for potential diagnostic and adverse-effect biomarkers. J Cancer. 2020;11(23):6925–38. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Ning W, Qiao N, Zhang XY, Pei DP, Wang WY. Metabolic profiling analysis for clinical urine of colorectal cancer. Asia-Pac J Clin Onco. 2021;17(4):403–13. [DOI] [PubMed] [Google Scholar]
- 18.Wang ZN, Lin Y, Liang JH, et al. NMR-based metabolomic techniques identify potential urinary biomarkers for early colorectal cancer detection. Oncotarget. 2017;8(62):105819–31. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Telleria O, Alboniga OE, Clos-Garcia M, et al. A comprehensive metabolomics analysis of fecal samples from advanced adenoma and colorectal cancer patients. Metabolites. 2022;12(6):550. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Kim M, Vogtmann E, Ahlquist DA, et al. Fecal metabolomic signatures in colorectal adenoma patients are associated with gut microbiota and early events of colorectal cancer pathogenesis. MBio. 2020. 10.1128/mBio.03186-19. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Tevini J, Eder SK, Huber-Schonauer U, et al. Changing metabolic patterns along the colorectal adenoma-carcinoma sequence. J Clin Med. 2022. 10.3390/jcm11030721. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Erben V, Poschet G, Schrotz-King P, Brenner H. Comparing metabolomics profiles in various types of liquid biopsies among screening participants with and without advanced colorectal neoplasms. Diagnostics. 2021. 10.3390/diagnostics11030561. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Kim RR, Kwon HN, Nam H, Kim JJ, Park S, Kim YH. Urine-NMR metabolomics for screening of advanced colorectal adenoma and early stage colorectal cancer. Sci Rep. 2019. 10.1038/s41598-019-41216-y. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.Lin Y, Ma CC, Liu CK, et al. NMR-based fecal metabolomics fingerprinting as predictors of earlier diagnosis in patients with colorectal cancer. Oncotarget. 2016;7(20):29454–64. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Ning W, Li HJ, Meng FQ, et al. Identification of differential metabolic characteristics between tumor and normal tissue from colorectal cancer patients by gas chromatography-mass spectrometry. Biomed Chromatogr. 2017. 10.1002/bmc.3999. [DOI] [PubMed] [Google Scholar]
- 26.Tristán AI, González-Flores E, Salmerón AD, et al. Serum nuclear magnetic resonance metabolomics analysis of human metastatic colorectal cancer: biomarkers and pathway analysis. NMR Biomed. 2023. 10.1002/nbm.4935. [DOI] [PubMed] [Google Scholar]
- 27.Nishiumi S, Kobayashi T, Ikeda A, et al. A novel serum metabolomics-based diagnostic approach for colorectal cancer. PLoS ONE. 2012. 10.1371/journal.pone.0040459. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Du XH, Li Q, Tang ZZ, et al. Alterations of the gut microbiome and fecal metabolome in colorectal cancer: implication of intestinal metabolism for tumorigenesis. Front Physiol. 2022. 10.3389/fphys.2022.854545. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Leichtle AB, Nuoffer JM, Ceglarek U, et al. Serum amino acid profiles and their alterations in colorectal cancer. Metabolomics. 2012;8(4):643–53. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Miyagi Y, Higashiyama M, Gochi A, et al. Plasma free amino acid profiling of five types of cancer patients and its application for early detection. PLoS ONE. 2011. 10.1371/journal.pone.0024143. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Nishiumi S, Kobayashi T, Kawana S, et al. Investigations in the possibility of early detection of colorectal cancer by gas chromatography/triple-quadrupole mass spectrometry. Oncotarget. 2017;8(10):17115–26. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Bednarz-Misa I, Fleszar MG, Zawadzki M, et al. L-arginine/NO pathway metabolites in colorectal cancer: relevance as disease biomarkers and predictors of adverse clinical outcomes following surgery. J Clin Med. 2020. 10.3390/jcm9061782. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Vaupel P, Schmidberger H, Mayer A. The Warburg effect: essential part of metabolic reprogramming and central contributor to cancer progression. Int J Radiat Biol. 2019;95(7):912–9. [DOI] [PubMed] [Google Scholar]
- 34.DeBerardinis RJ, Cheng T. Q’s next: the diverse functions of glutamine in metabolism, cell biology and cancer. Oncogene. 2010;29(3):313–24. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Araújo WL, Martins AO, Fernie AR, Tohge T. 2-Oxoglutarate: linking TCA cycle function with amino acid, glucosinolate, flavonoid, alkaloid, and gibberellin biosynthesis. Front Plant Sci. 2014;5:552. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Lieu EL, Nguyen T, Rhyne S, Kim J. Amino acids in cancer. Exp Mol Med. 2020;52(1):15–30. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Reifenberg P, Zimmer A. Branched-chain amino acids: physico-chemical properties, industrial synthesis and role in signaling, metabolism and energy production. Amino Acids. 2024;56(1):51. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Lee HO, Uzzo RG, Kister D, Kruger WD. Combination of serum histidine and plasma tryptophan as a potential biomarker to detect clear cell renal cell carcinoma. J Transl Med. 2017;15(1):72. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Uchiyama K, Yagi N, Mizushima K, et al. Serum metabolomics analysis for early detection of colorectal cancer. J Gastroenterol. 2017;52(6):677–94. [DOI] [PubMed] [Google Scholar]
- 40.Liang L, Kong C, Li JM, et al. Distinct microbes, metabolites, and the host genome define the multi-omics profiles in right-sided and left-sided colon cancer. Microbiome. 2024. 10.1186/s40168-024-01987-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Kong C, Liang L, Liu G, et al. Integrated metagenomic and metabolomic analysis reveals distinct gut-microbiome-derived phenotypes in early-onset colorectal cancer. Gut. 2023;72(6):1129–42. [DOI] [PubMed] [Google Scholar]
- 42.Ghosh TS, Shanahan F, O’Toole PW. The gut microbiome as a modulator of healthy ageing. Nat Rev Gastro Hepat. 2022;19(9):565–84. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Dodd D, Spitzer MH, Van Treuren W, et al. A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites. Nature. 2017;551(7682):648. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Opperman RCM, Vermeer E, Bosch S, de Meij TGJ, de Boer NKH, Struys EA. Faecal amino acids stability: investigating optimal sampling conditions for analysis. Metabolomics. 2025. 10.1007/s11306-025-02279-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Smith L, Villaret-Cazadamont J, Claus SP, et al. Important considerations for sample collection in metabolomics studies with a special focus on applications to liver functions. Metabolites. 2020. 10.3390/metabo10030104. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Bray GA, Redman LM, de Jonge L, Rood J, Sutton EF, Smith SR. Plasma amino acids during 8 weeks of overfeeding: relation to diet body composition and fat cell size in the PROOF study. Obesity. 2018;26(2):324–31. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Hill EB, Baxter BA, Pfluger B, et al. Plasma, urine, and stool metabolites in response to dietary rice bran and navy bean supplementation in adults at high-risk for colorectal cancer. Front Gastroenterol (Lausanne). 2023. 10.3389/fgstr.2023.1087056. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 48.D’eon JC, Lankadurai BP, Simpson AJ, et al. Cross-platform comparison of amino acid metabolic profiling in three model organisms used in environmental metabolomics. Metabolites. 2023. 10.3390/metabo13030402. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Galezowska G, Ratajczyk J, Wolska L. Determination of amino acids in human biological fluids by high-performance liquid chromatography: critical review. Amino Acids. 2021;53(7):993–1009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 50.Kaspar H, Dettmer K, Chan Q, et al. Urinary amino acid analysis: a comparison of iTRAQ-LC-MS/MS, GC-MS, and amino acid analyzer. J Chromatogr B Analyt Technol Biomed Life Sci. 2009;877(20–21):1838–46. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.Piestansky J, Olesova D, Galba J, et al. Profiling of amino acids in urine samples of patients suffering from inflammatory bowel disease by capillary electrophoresis-mass spectrometry. Molecules. 2019. 10.3390/molecules24183345. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 52.Ribbenstedt A, Ziarrusta H, Benskin JP. Development, characterization and comparisons of targeted and non-targeted metabolomics methods. PLoS ONE. 2018. 10.1371/journal.pone.0207082. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 53.Kulecka M, Czarnowski P, Balabas A, et al. Microbial and metabolic gut profiling across seven malignancies identifies fecal and formic acid as commonly altered in cancer patients. Int J Mol Sci. 2024;25(15):8026. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54.Le Gall G, Guttula K, Kellingray L, et al. Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls. Oncotarget. 2018;9(70):33278–89. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55.Lin Y, Ma C, Bezabeh T, et al. (1) h NMR-based metabolomics reveal overlapping discriminatory metabolites and metabolic pathway disturbances between colorectal tumor tissues and fecal samples. Int J Cancer. 2019;145(6):1679–89. [DOI] [PubMed] [Google Scholar]
- 56.Monleón D, Morales JM, Barrasa A, López JA, Vázquez C, Celda B. Metabolite profiling of fecal water extracts from human colorectal cancer. NMR Biomed. 2009;22(3):342–8. [DOI] [PubMed] [Google Scholar]
- 57.Ramzy A, Abdelmoneim TK, Arafat M, et al. Metabolomic analysis reveals key changes in amino acid metabolism in colorectal cancer patients. Amino Acids. 2025. 10.1007/s00726-025-03448-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Sun XZ, Zhao DY, Zhou YC, Wang QQ, Qin G, Yao SK. Alteration of fecal tryptophan metabolism correlates with shifted microbiota and may be involved in pathogenesis of colorectal cancer. World J Gastroenterol. 2020;26(45):7173–90. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 59.Yang YZ, Misra BB, Liang L, et al. Integrated microbiome and metabolome analysis reveals a novel interplay between commensal bacteria and metabolites in colorectal cancer. Theranostics. 2019;9(14):4101–14. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 60.Zhang QY, Wu W, Guo FY, et al. Characteristics of gut microbiota and fecal metabolites in patients with colorectal cancer-associated iron deficiency anemia. Microorganisms. 2024. 10.3390/microorganisms12071319. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 61.Yagin FH, Alkhateeb A, Colak C, Azzeh M, Yagin B, Rueda L. A fecal-microbial-extracellular-vesicles-based metabolomics machine learning framework and biomarker discovery for predicting colorectal cancer patients. Metabolites. 2023. 10.3390/metabo13050589. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 62.Deng L, Ismond K, Liu ZJ, et al. Urinary metabolomics to identify a unique biomarker panel for detecting colorectal cancer: a multicenter study. Cancer Epidemiol Biomark Prev. 2019;28(8):1283–91. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 63.Zhang L, Zheng JM, Ismond KP, et al. Identification of urinary biomarkers of colorectal cancer: towards the development of a colorectal screening test in limited resource settings. Cancer Biomark. 2023;36(1):17–30. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 64.Deng LL, Gu HW, Zhu JJ, et al. Combining NMR and LC/MS using backward variable elimination: metabolomics analysis of colorectal cancer, polyps, and healthy controls. Anal Chem. 2016;88(16):7975–83. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 65.Farshidfar F, Weljie AM, Kopciuk KA, et al. A validated metabolomic signature for colorectal cancer: exploration of the clinical value of metabolomics. Br J Cancer. 2016;115(7):848–57. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 66.Farshidfar F, Kopciuk KA, Hilsden R, et al. A quantitative multimodal metabolomic assay for colorectal cancer. BMC Cancer. 2018. 10.1186/s12885-017-3923-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 67.Gu JP, Xiao YQ, Shu D, et al. Metabolomics analysis in serum from patients with colorectal polyp and colorectal cancer by H-NMR spectrometry. Dis Markers. 2019. 10.1155/2019/3491852. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 68.Guo JC, Pan YM, Chen JG, et al. Serum metabolite signatures in normal individuals and patients with colorectal adenoma or colorectal cancer using UPLC-MS/MS method. J Proteomics. 2023. 10.1016/j.jprot.2022.104741. [DOI] [PubMed] [Google Scholar]
- 69.Huang A, Fuchs D, Widner B, Glover C, Henderson DC, Allen-Mersh TG. Serum tryptophan decrease correlates with immune activation and impaired quality of life in colorectal cancer. Br J Cancer. 2002;86(11):1691–6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 70.Ikeda A, Nishiumi S, Shinohara M, et al. Serum metabolomics as a novel diagnostic approach for gastrointestinal cancer. Biomed Chromatogr. 2012;26(5):548–58. [DOI] [PubMed] [Google Scholar]
- 71.Long Y, Sanchez-Espiridion B, Lin MB, et al. Global and targeted serum metabolic profiling of colorectal cancer progression. Cancer-Am Cancer Soc. 2017;123(20):4066–74. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 72.Qiu YP, Cai GX, Su MM, et al. Serum metabolite profiling of human colorectal cancer using GC-TOFMS and UPLC-QTOFMS. J Proteome Res. 2009;8(10):4844–50. [DOI] [PubMed] [Google Scholar]
- 73.Tan BB, Qiu YP, Zou X, et al. Metabonomics identifies serum metabolite markers of colorectal cancer. J Proteome Res. 2013;12(6):3000–9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 74.Wu JP, Wu MY, Wu QX. Identification of potential metabolite markers for colon cancer and rectal cancer using serum metabolomics. J Clin Lab Anal. 2020. 10.1002/jcla.23333. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 75.Zhu JJ, Djukovic D, Deng LL, et al. Colorectal cancer detection using targeted serum metabolic profiling. J Proteome Res. 2014;13(9):4120–30. [DOI] [PubMed] [Google Scholar]
- 76.Eylem CC, Yilmaz M, Derkus B, et al. Untargeted multi-omic analysis of colorectal cancer-specific exosomes reveals joint pathways of colorectal cancer in both clinical samples and cell culture. Cancer Lett. 2020;469:186–94. [DOI] [PubMed] [Google Scholar]
- 77.Coradduzza D, Arru C, Culeddu N, et al. Quantitative metabolomics to explore the role of plasma polyamines in colorectal cancer. Int J Mol Sci. 2023;24(1):101. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 78.Geijsen AJMR, Brezina S, Keski-Rahkonen P, et al. Plasma metabolites associated with colorectal cancer: a discovery-replication strategy. Int J Cancer. 2019;145(5):1221–31. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 79.Okamoto N, Miyagi Y, Chiba A, et al. Diagnostic modeling with differences in plasma amino acid profiles between non-cachectic colorectal/breast cancer patients and healthy individuals. Int J Med Med Sci. 2009;1:1–8. [Google Scholar]
- 80.Rodríguez-Tomàs E, Arenas M, Gómez J, et al. Identification of potential metabolic biomarkers of rectal cancer and of the effect of neoadjuvant radiochemotherapy. PLoS ONE. 2021. 10.1371/journal.pone.0250453. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 81.Sun Y, Zhang X, Hang D, et al. Integrative plasma and fecal metabolomics identify functional metabolites in adenoma-colorectal cancer progression and as early diagnostic biomarkers. Cancer Cell. 2024. 10.1016/j.ccell.2024.07.005. [DOI] [PubMed] [Google Scholar]
- 82.Arima K, Lau MC, Zhao M, et al. Metabolic profiling of formalin-fixed paraffin-embedded tissues discriminates normal colon from colorectal cancer. Mol Cancer Res. 2020;18(6):883–90. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 83.Cai YP, Rattray NJW, Zhang Q, et al. Tumor tissue-specific biomarkers of colorectal cancer by anatomic location and stage. Metabolites. 2020. 10.3390/metabo10060257. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 84.Cai R, Ke L, Zhao Y, et al. NMR-based metabolomics combined with metabolic pathway analysis reveals metabolic heterogeneity of colorectal cancer tissue at different anatomical locations and stages. Int J Cancer. 2025;156(8):1644–55. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 85.Chan ECY, Koh PK, Mal M, et al. Metabolic profiling of human colorectal cancer using high-resolution magic angle spinning nuclear magnetic resonance (HR-MAS NMR) spectroscopy and gas chromatography mass spectrometry (GC/MS). J Proteome Res. 2009;8(1):352–61. [DOI] [PubMed] [Google Scholar]
- 86.Cho K, Choi ES, Lee SY, et al. Screening of important metabolites and KRAS genotypes in colon cancer using secondary ion mass spectrometry. Bioeng Transl Med. 2021. 10.1002/btm2.10200. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 87.Denkert C, Budczies J, Weichert W, et al. Metabolite profiling of human colon carcinoma—deregulation of TCA cycle and amino acid turnover. Mol Cancer. 2008. 10.1186/1476-4598-7-72. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 88.Feizi H, Kafil HS, Plotnikov A, et al. Polyp and tumor microenvironment reprogramming in colorectal cancer: insights from mucosal bacteriome and metabolite crosstalk. Ann Clin Microbiol Antimicrob. 2025. 10.1186/s12941-025-00777-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 89.Gao P, Zhou CJ, Zhao L, Zhang GH, Zhang Y. Tissue amino acid profile could be used to differentiate advanced adenoma from colorectal cancer. J Pharm Biomed Anal. 2016;118:349–55. [DOI] [PubMed] [Google Scholar]
- 90.Jiménez B, Mirnezami R, Kinross J, et al. H HR-MAS NMR spectroscopy of tumor-induced local metabolic “field-effects” enables colorectal cancer staging and prognostication. J Proteome Res. 2013;12(2):959–68. [DOI] [PubMed] [Google Scholar]
- 91.Kinross J, Mirnezami R, Alexander J, et al. A prospective analysis of mucosal microbiome-metabonome interactions in colorectal cancer using a combined MAS 1HNMR and metataxonomic strategy. Sci Rep. 2017. 10.1038/s41598-017-08150-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 92.Long ZP, Zhou JD, Xie K, et al. Metabolomic markers of colorectal tumor with different clinicopathological features. Front Oncol. 2020. 10.3389/fonc.2020.00981. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 93.Lv WJ, Guo L, Zheng FJ, et al. Alternate reversed-phase and hydrophilic interaction liquid chromatography coupled with mass spectrometry for broad coverage in metabolomics analysis. J Chromatogr B. 2020. 10.1016/j.jchromb.2020.122266. [DOI] [PubMed] [Google Scholar]
- 94.Mal M, Koh PK, Cheah PY, Chan ECY. Metabotyping of human colorectal cancer using two-dimensional gas chromatography mass spectrometry. Anal Bioanal Chem. 2012;403(2):483–93. [DOI] [PubMed] [Google Scholar]
- 95.Manna SK, Tanaka N, Krausz KW, et al. Biomarkers of coordinate metabolic reprogramming in colorectal tumors in mice and humans. Gastroenterology. 2014;146(5):1313–24. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 96.Moreno A, Arus C. Quantitative and qualitative characterization of 1H NMR spectra of colon tumors, normal mucosa and their perchloric acid extracts: decreased levels of myo-inositol in tumours can be detected in intact biopsies. NMR Biomed. 1996;9(1):33–45. [DOI] [PubMed] [Google Scholar]
- 97.Phua LC, Chue XP, Koh PK, Cheah PY, Ho HK, Chan ECY. Non-invasive fecal metabonomic detection of colorectal cancer. Cancer Biol Ther. 2014;15(4):389–97. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 98.Qiu YP, Cai GX, Zhou BS, et al. A distinct metabolic signature of human colorectal cancer with prognostic potential. Clin Cancer Res. 2014;20(8):2136–46. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 99.Rao J, Wang X, Wan XH, et al. Multiomics approach identifies key proteins and regulatory pathways in colorectal cancer. J Proteome Res. 2024;24(1):356–67. [DOI] [PubMed] [Google Scholar]
- 100.Wang HJ, Wang L, Zhang HL, et al. H NMR-based metabolic profiling of human rectal cancer tissue. Mol Cancer. 2013. 10.1186/1476-4598-12-121. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 101.Wang Q, Ye JZ, Fang DQ, et al. Multi-omic profiling reveals associations between the gut mucosal microbiome, the metabolome, and host DNA methylation associated gene expression in patients with colorectal cancer. BMC Microbiol. 2020. 10.1186/s12866-020-01762-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 102.Zha HB, Cai YP, Yin YD, Wang ZZ, Li K, Zhu ZJ. Swathtomrm: development of high-coverage targeted metabolomics method using SWATH technology for biomarker discovery. Anal Chem. 2018;90(6):4062–70. [DOI] [PubMed] [Google Scholar]
- 103.Su H, Gu X, Zhang W, et al. Identification of salivary biomarkers in colorectal cancer by integrating Olink proteomics and metabolomics. J Proteome Res. 2025;24(5):2542–52. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
The primary data supporting the findings of this study are included in the article and provided in Appendix B. Additional data may be obtained from the corresponding author upon reasonable request.
