The solid state structures of two synthetic N-monoalkytryptamine analogs of the ‘magic’ mushroom natural product norpsilocin are presented.
Keywords: crystal structure, tryptamines, indoles, hydrogen bonds
Abstract
The solid-state structures of N-ethyl-4-hydroxytryptamine (4-HO-NET) {systematic name: 3-[2-(ethylamino)ethyl]-1H-indol-4-ol}, C12H16N2O, and 4-hydroxy-N-propyltryptamine (4-HO-NPT) {systematic name: 3-[2-(propylamino)ethyl]-1H-indol-4-ol}, C13H18N2O, are reported. Both compounds possess a single tryptamine molecule in the asymmetric unit that exhibits an internal O—H⋯N hydrogen bond. In the extended structures, the molecules are linked by N—H⋯O hydrogen bonds to form infinite chains along [001] for 4-HO-NET and along [101] for 4-HO-NPT.
1. Chemical context
Traditional psychoactive compounds including psilocybin (4-phosphoryloxy-N,N-dimethyltryptamine; C12H17N2O4P), psilocin (4-hydroxy-N,N-dimethyltryptamine; C12H16N2O), DMT (N,N-dimethyltryptamine; C12H16N2), and 5-MeO-DMT (5-methoxy-N,N-dimethyltryptamine; C13H18N2O) are all based upon an N,N-dialkyltryptamine backbone. Lesser known naturally occurring compounds such as baeocystin (4-phosphoryloxy-N-methyltryptamine; C11H15N2O4P) and norpsilocin (4-hydroxy-N-methyltryptamine; C11H14N2O) have a suggested biological relevance but an underdeveloped chemistry. We have previously reported the crystal structures of both of these N-monoalkyltryptamine compounds (Naeem et al., 2022 ▸; Chadeayne et al., 2020b ▸), as well as explored their pharmacological properties (Glatfelter, Pottie et al., 2022 ▸). The removal of a single methyl group from the traditional N,N-dimethyltryptamines can significantly alter lipophilicity, central nervous system exposure, metabolism, receptor activity and transporter pharmacology. The N-monoalkyltryptamines are a group of serotonergic chemicals that could present pharmacology not accessible through the class of N,N-dialkyltryptamines. In early 2023, we reported the synthesis and structure of 4-hydroxy-N-isopropyltryptamine (4-HO-NiPT) as the first direct N-alkyl analogue of norpsilocin (Laban et al., 2023 ▸). Sherwood and co-workers later reported a number of other N-alkyl analogues, exploring their pharmacology. Of note, derivatives of norpsilocin where the steric bulk of the alkyl group was increased (i.e. 4-HO-NiPT) showed psychoactive effects in animal models (Sherwood et al., 2024 ▸). We recently reported the 4-methoxy variant of norpsilocin, as well as other 4-methoxy mono-N-alkyl derivatives, which were shown to be potent 5-HT2A agonists with reduced psychedelic-like effects in animal models (Glatfelter, Schalk et al., 2026 ▸). Herein, we report the syntheses and structures of two norpsilocin analogues, N-ethyl-4-hydroxytryptamine (4-HO-NET; C12H16N2O) and 4-hydroxy-N-propyltryptamine (4-HO-NPT; C13H18N2O).
2. Structural commentary
The molecular structures of 4-HO-NET and 4-HO-NPT are shown in Fig. 1 ▸. The asymmetric unit of each structure contains a single tryptamine molecule. The side chain in 4-HO-NET displays an extended conformation, as shown by the C9—C10—N2—C11 and C10—N2—C11—C12 torsion angles of −174.88 (12) and −174.34 (14)°, respectively. The longer side chain in 4-HO-NPT shows a more twisted conformation with C9—C10—N2—C11 = −101.41 (15), C10—N1—C11—C12 = 174.61 (13) and N2—C11—C12—C13 = 169.17 (13)°.
Figure 1.

The molecular structures of 4-HO-NET (left) and 4-HO-NPT (right) with displacement ellipsoids drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines.
Both molecules possess an internal O—H⋯N hydrogen bond between the phenol oxygen atom (O1) and the acyclic amine nitrogen atom (N2), which generates an S(8) ring in each case. As expected, both C1–C8/N1 indole ring systems are near planar, showing a r.m.s. deviation of 0.009Å for 4-HO-NET and 0.011Å for 4-HO-NPT.
3. Supramolecular features
In the solid-state structure of 4-HO-NET, the molecules are linked by N1—H1A⋯O1 hydrogen bonds between the indole N—H grouping and the hydroxide group. These hydrogen bonds link the molecules into infinite chains propagating along the [001] direction (Table 1 ▸). The crystal packing of 4-HO-NET is shown on the left in Fig. 2 ▸.
Table 1. Hydrogen-bond geometry (Å, °) for 4-HO-NET.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1A⋯O1i | 0.87 (1) | 2.06 (1) | 2.8789 (15) | 158 (2) |
| O1—H1⋯N2 | 1.00 (1) | 1.58 (1) | 2.5764 (16) | 173 (2) |
Symmetry code: (i)
.
Figure 2.

The crystal packing of 4-HO-NET (left) and 4-HO-NPT (right), both shown along the a-axis direction. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding are omitted for clarity.
In the extended structure of 4-HO-NPT, two molecules are connected through N2—H2⋯O1 hydrogen bonds. These intermolecular hydrogen bonds combine with the O1—H1⋯N2 intramolecular hydrogen bonds to form rings demonstrating a graph set notation of
(16) (Etter et al., 1990 ▸). These dimers are then joined together through the indole N1—H1A⋯O1 hydrogen bond to the next dimer, forming infinite chains propagating along the [101] direction (Table 2 ▸). The crystal packing of 4-HO-NPT is shown on the right in Fig. 2 ▸.
Table 2. Hydrogen-bond geometry (Å, °) for 4-HO-NPT.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N2 | 1.01 (1) | 1.59 (1) | 2.5905 (15) | 175 (2) |
| N1—H1A⋯O1i | 0.87 (1) | 2.06 (1) | 2.9347 (16) | 177 (2) |
| N2—H2⋯O1ii | 0.90 (1) | 2.62 (1) | 3.4957 (17) | 166 (2) |
Symmetry codes: (i)
; (ii)
.
4. Database survey
The structures of monoalkyltryptamines are not common in the Cambridge Structural Database, with only ten crystal structures previously reported, all in the past few years. These include the natural product baeocystin (Naeem et al., 2022 ▸; FETBAB), its hydrolysis product norpsilocin as its freebase and fumarate salt (Chadeayne et al., 2020b ▸; MULXAV, MULXEZ) and the synthetic prodrug of norpsilocin, 4-acetoxy-N-methyltryptamine (Glatfelter, Pottie et al., 2022 ▸). The others are N-methylserotonin as its hydrogen oxalate salt (Naeem, Anas et al., 2023 ▸), 4-benzyl-N-isopropyltryptamine, 4-hydroxy-N-isopropyltryptamine (Laban et al., 2023 ▸3; YEYZIP, YEYZOV), and the freebase, bromide and fumarate salts of N-cyclohexyltryptamine (Naeem, Le et al., 2023 ▸; YITWAD, YITWEH, YITWIL).
There are eight 4-hydroxy-N,N-dialkyltryptamine crystal structures reported in the literature, which are 4-hydroxy-N-methyl-N-isopropyltryptamine as its fumarate (Chadeayne et al., 2020a ▸; TUFQAP) and hydrofumarate (Chadeayne et al., 2019a ▸; RONSUL), 4-hydroxy-N,N-dipropyltryptamine as its fumarate (Chadeayne et al., 2019b ▸; WUCGAF) and chloride (Sammeta et al., 2020 ▸; WAMGEA) salts, 4-hydroxy-N,N-diisopropyltryptamine as its hydrofumarate salt (Naeem et al., 2025 ▸; BOWSOF), and the natural product psilocin as its freebase (Petcher & Weber, 1974 ▸; PSILIN; Zeller et al., 2024 ▸; PSILIN03), its tatrate salt (Barrow et al., 2025 ▸; XOWXIU), and as a co-crystal with the natural product psilocybin (Silverstone, 2024 ▸; MIMKOM). There are also four 4-hydroxy-N,N,N-trialkyltryptamine crystal structures reported including 4-hydroxy-N,N,N-trimethyltryptamine (Chadeayne et al., 2020c ▸; XUXFAA), 4-hydroxy-N,N-dimethyl-N-ethyltryptamine, 4-hydroxy-N,N-dimethyl-N-propyltryptamine, and 4-hydroxy-N,N-dimethyl-N-isopropyltryptamine (Glatfelter, Pham et al., 2022 ▸; EDOYIJ, EDOYUV, EDOZEG).
5. Synthesis and crystallization
4-HO-NET: To an ice-bath-cooled diethyl ether (60 ml) solution of 4-benzyloxy-1H-indole (3.0 g) was added oxalylchloride (3.4 g) dropwise. The mixture was stirred in the ice bath for 6 h and then added dropwise to an ice-bath-cooled solution of 70% aqueous ethylamine (5.8 g). The mixture was warmed to room temperature and stirred overnight. The resulting suspension was concentrated under reduced pressure and the residue was purified by silica gel chromatography (methylene chloride/methanol) to afford 2-(4-benzyloxy)-1H-indol-3-yl)-N-ethyl-2-oxoacetamide as a yellow oil (3.2 g). The yellow oil was dissolved in tetrahydrofuran (50 ml), cooled in an ice bath, and 30 ml of 1 M borane-tetrahydrofuran was added dropwise. The mixture was heated at reflux overnight. The resulting yellow solution was quenched with 2 M hydrochloric acid and heated at reflux for 2 h. The mixture was cooled and ammonium hydroxide was added until the solution was basic. The resulting mixture was extracted with methylene chloride; the organic layer was washed with water and brine, and then dried over sodium sulfate. Solvent was removed in vacuo and the resulting residue was purified by silica gel chromatography [methylene chloride/methanol (3.5 M ammonia)] to afford 4-benzyloxy-N-ethyltryptamine (4-BnO-NET) as a yellow solid (1.6 g, 54% yield). To a solution of 4-BnO-NET (600 mg) in methanol (12 ml) was added Pd/C (120 mg) and Pd(OH)2/C (120 mg). The mixture was stirred for 3 h under a hydrogen atmosphere. The resulting black suspension was filtered, the solid was washed with methanol, and the combined filtrates were concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography [methylene chloride/methanol (3.5 M ammonia)] to afford 4-hydroxy-N-ethyltryptamine (4-HO-NET) as a white solid (162 mg, 39% yield). Single crystals suitable for X-ray diffraction were grown from the slow evaporation of an acetone solution.
4-HO-NPT: To an ice bath-cooled diethyl ether (40 ml) solution of 4-benzyloxy-1H-indole (2.0 g) was added oxalylchloride (2.3 g) dropwise. The mixture was stirred for 6 h under cooling, and then added dropwise into an ice-bath cooled vessel containing propan-1-amine (5.3 g). The mixture was warmed to room temperature and stirred overnight. The solvent was removed in vacuo and the resulting residue was purified by silica gel chromatography (methylene chloride/methanol) to afford 2-(4-benzyloxy-1H-indol-3-yl)-2-oxo-N-propylacetamide as a yellow oil (1 g, 33% yield). This yellow oil was dissolved in tetrahydrofuran (15 ml) and cooled in an ice bath, then 9 ml of 1.0 M borane-tetrahydrofuran in tetrahydrofuran was added dropwise. The mixture was heated at reflux for 2 h, cooled to room temperature, and then ammonium hydroxide was added until it was basic. The mixture was extracted with methylene chloride and the organic phase was washed with water and brine. It was dried over sodium sulfate, then solvent was removed in vacuo, and purified by silica gel chromatography to yield 4-benzyloxy-N-propyltryptamine (4-BnO-NPT) as a yellow solid (192 mg, 21% yield). To a solution of 4-BnO-NPT (190 mg) in methanol (4 ml) was added Pd/C (40 mg) and Pd(OH)2/C (40 mg). The mixture was stirred for 3 h under a hydrogen atmosphere. The resulting black suspension was filtered, the solid was washed with methanol, and the combined filtrates were concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography [methylene chloride/methanol (3.5 M ammonia)] to afford 4-hydroxy-N-propyltryptamine (4-HO-NPT) as a white solid (75 mg, 55% yield). Single crystals suitable for X-ray diffraction studies were grown from the slow evaporation of an acetone solution.
6. Refinement
Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. N- and O-bound H atoms were refined with restrained distances. C-bound H atoms were positioned geometrically (0.93–0.97 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C).
Table 3. Experimental details.
| 4-HO-NET | 4-HO-NPT | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C12H16N2O | C13H18N2O |
| M r | 204.27 | 218.29 |
| Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/n |
| Temperature (K) | 300 | 300 |
| a, b, c (Å) | 8.3887 (5), 9.0776 (5), 14.5657 (9) | 9.0478 (6), 11.6680 (8), 11.3885 (7) |
| β (°) | 100.132 (2) | 91.523 (2) |
| V (Å3) | 1091.87 (11) | 1201.86 (14) |
| Z | 4 | 4 |
| F(000) | 440 | 472 |
| Dx (Mg m−3) | 1.243 | 1.206 |
| Radiation type | Mo Kα | Mo Kα |
| No. of reflections for cell measurement | 9957 | 8762 |
| θ range (°) for cell measurement | 2.7–26.3 | 2.8–26.4 |
| μ (mm−1) | 0.08 | 0.08 |
| Crystal shape | Block | Block |
| Colour | Yellow | Colourless |
| Crystal size (mm) | 0.27 × 0.21 × 0.20 | 0.24 × 0.22 × 0.21 |
| Data collection | ||
| Diffractometer | Bruker D8 Venture CMOS | Bruker D8 Venture CMOS |
| Scan method | φ and ω scans | φ and ω scans |
| Absorption correction | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) |
| Tmin, Tmax | 0.704, 0.745 | 0.705, 0.745 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 23801, 2243, 1953 | 34791, 2472, 1941 |
| R int | 0.028 | 0.040 |
| (sin θ/λ)max (Å−1) | 0.625 | 0.626 |
| Refinement | ||
| R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.112, 1.05 | 0.038, 0.107, 1.01 |
| No. of reflections | 2243 | 2472 |
| No. of parameters | 150 | 159 |
| No. of restraints | 3 | 3 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.13 | 0.14, −0.11 |
Supplementary Material
Crystal structure: contains datablock(s) global, 4-HO-NPT, 4-HO-NET. DOI: 10.1107/S2056989026008571/hb8250sup1.cif
Structure factors: contains datablock(s) 4-HO-NET. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.hkl
Structure factors: contains datablock(s) 4-HO-NPT. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.hkl
Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.cml
Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
Financial statements and conflict of interest: This study was funded by CaaMTech, Inc. ARC reports an ownership interest in CaaMTech, Inc., which owns US and worldwide patent applications, covering new tryptamine compounds, compositions, formulations, novel crystalline forms, and methods of making and using the same.
supplementary crystallographic information
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Crystal data
| C12H16N2O | F(000) = 440 |
| Mr = 204.27 | Dx = 1.243 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.3887 (5) Å | Cell parameters from 9957 reflections |
| b = 9.0776 (5) Å | θ = 2.7–26.3° |
| c = 14.5657 (9) Å | µ = 0.08 mm−1 |
| β = 100.132 (2)° | T = 300 K |
| V = 1091.87 (11) Å3 | Block, yellow |
| Z = 4 | 0.27 × 0.21 × 0.20 mm |
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Data collection
| Bruker D8 Venture CMOS diffractometer | 1953 reflections with I > 2σ(I) |
| φ and ω scans | Rint = 0.028 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 26.4°, θmin = 2.7° |
| Tmin = 0.704, Tmax = 0.745 | h = −10→10 |
| 23801 measured reflections | k = −11→11 |
| 2243 independent reflections | l = −18→18 |
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Refinement
| Refinement on F2 | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.040 | w = 1/[σ2(Fo2) + (0.0518P)2 + 0.3161P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.112 | (Δ/σ)max < 0.001 |
| S = 1.05 | Δρmax = 0.25 e Å−3 |
| 2243 reflections | Δρmin = −0.13 e Å−3 |
| 150 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 3 restraints | Extinction coefficient: 0.007 (2) |
| Primary atom site location: dual |
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.26670 (16) | 0.64120 (12) | 0.59539 (6) | 0.0558 (3) | |
| N1 | 0.24109 (16) | 0.75788 (14) | 0.90599 (8) | 0.0457 (3) | |
| N2 | 0.35265 (16) | 0.37322 (13) | 0.63603 (9) | 0.0457 (3) | |
| C1 | 0.32861 (17) | 0.63081 (16) | 0.90504 (9) | 0.0425 (3) | |
| H1B | 0.373600 | 0.578230 | 0.958099 | 0.051* | |
| C2 | 0.19401 (15) | 0.80509 (14) | 0.81596 (9) | 0.0365 (3) | |
| C3 | 0.10539 (17) | 0.93092 (16) | 0.78357 (10) | 0.0444 (3) | |
| H3 | 0.068680 | 0.996395 | 0.824333 | 0.053* | |
| C4 | 0.07518 (17) | 0.95333 (16) | 0.68926 (11) | 0.0462 (4) | |
| H4 | 0.017317 | 1.036282 | 0.665300 | 0.055* | |
| C5 | 0.12934 (17) | 0.85438 (15) | 0.62827 (10) | 0.0439 (3) | |
| H5 | 0.105785 | 0.872798 | 0.564516 | 0.053* | |
| C6 | 0.21698 (16) | 0.72971 (14) | 0.65966 (9) | 0.0362 (3) | |
| C7 | 0.25324 (14) | 0.70272 (13) | 0.75676 (8) | 0.0313 (3) | |
| C8 | 0.34133 (15) | 0.59139 (14) | 0.81676 (9) | 0.0354 (3) | |
| C9 | 0.43485 (16) | 0.45785 (15) | 0.79633 (10) | 0.0422 (3) | |
| H9A | 0.480105 | 0.411568 | 0.855178 | 0.051* | |
| H9B | 0.524860 | 0.490499 | 0.767807 | 0.051* | |
| C10 | 0.34164 (18) | 0.34175 (15) | 0.73357 (10) | 0.0451 (3) | |
| H10A | 0.386353 | 0.245039 | 0.750729 | 0.054* | |
| H10B | 0.229064 | 0.342004 | 0.741166 | 0.054* | |
| C11 | 0.2549 (2) | 0.2752 (2) | 0.56823 (13) | 0.0634 (5) | |
| H11A | 0.140925 | 0.290158 | 0.569964 | 0.076* | |
| H11B | 0.281328 | 0.173480 | 0.584668 | 0.076* | |
| C12 | 0.2861 (3) | 0.3053 (2) | 0.47154 (13) | 0.0805 (6) | |
| H12A | 0.219642 | 0.241769 | 0.427983 | 0.121* | |
| H12B | 0.398139 | 0.287178 | 0.469347 | 0.121* | |
| H12C | 0.260572 | 0.406187 | 0.455488 | 0.121* | |
| H1A | 0.229 (2) | 0.8046 (19) | 0.9562 (9) | 0.067 (5)* | |
| H1 | 0.301 (2) | 0.5388 (13) | 0.6159 (14) | 0.086 (6)* | |
| H2 | 0.4583 (12) | 0.3621 (19) | 0.6293 (12) | 0.062 (5)* |
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0953 (9) | 0.0449 (6) | 0.0303 (5) | 0.0192 (6) | 0.0194 (5) | 0.0045 (4) |
| N1 | 0.0593 (7) | 0.0476 (7) | 0.0307 (6) | 0.0011 (6) | 0.0096 (5) | −0.0077 (5) |
| N2 | 0.0504 (7) | 0.0407 (6) | 0.0468 (7) | 0.0037 (5) | 0.0102 (5) | −0.0051 (5) |
| C1 | 0.0493 (8) | 0.0449 (7) | 0.0316 (6) | −0.0017 (6) | 0.0026 (5) | 0.0025 (5) |
| C2 | 0.0374 (6) | 0.0373 (7) | 0.0355 (6) | −0.0048 (5) | 0.0084 (5) | −0.0039 (5) |
| C3 | 0.0433 (7) | 0.0399 (7) | 0.0518 (8) | 0.0043 (6) | 0.0126 (6) | −0.0084 (6) |
| C4 | 0.0419 (7) | 0.0383 (7) | 0.0576 (9) | 0.0073 (6) | 0.0067 (6) | 0.0052 (6) |
| C5 | 0.0491 (8) | 0.0437 (7) | 0.0377 (7) | 0.0039 (6) | 0.0046 (6) | 0.0064 (6) |
| C6 | 0.0426 (7) | 0.0344 (6) | 0.0324 (6) | −0.0008 (5) | 0.0088 (5) | 0.0010 (5) |
| C7 | 0.0319 (6) | 0.0308 (6) | 0.0320 (6) | −0.0038 (5) | 0.0074 (5) | 0.0000 (5) |
| C8 | 0.0374 (6) | 0.0358 (6) | 0.0331 (6) | −0.0028 (5) | 0.0063 (5) | 0.0021 (5) |
| C9 | 0.0438 (7) | 0.0401 (7) | 0.0424 (7) | 0.0062 (6) | 0.0065 (6) | 0.0060 (6) |
| C10 | 0.0524 (8) | 0.0341 (7) | 0.0512 (8) | 0.0051 (6) | 0.0159 (6) | 0.0025 (6) |
| C11 | 0.0675 (11) | 0.0538 (9) | 0.0665 (11) | 0.0006 (8) | 0.0049 (8) | −0.0181 (8) |
| C12 | 0.1077 (17) | 0.0721 (13) | 0.0539 (10) | 0.0148 (12) | −0.0069 (10) | −0.0130 (9) |
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Geometric parameters (Å, º)
| O1—C6 | 1.3539 (16) | C5—H5 | 0.9300 |
| O1—H1 | 1.003 (9) | C5—C6 | 1.3827 (19) |
| N1—C1 | 1.3687 (19) | C6—C7 | 1.4147 (17) |
| N1—C2 | 1.3700 (17) | C7—C8 | 1.4506 (17) |
| N1—H1A | 0.867 (9) | C8—C9 | 1.5018 (18) |
| N2—C10 | 1.4679 (19) | C9—H9A | 0.9700 |
| N2—C11 | 1.468 (2) | C9—H9B | 0.9700 |
| N2—H2 | 0.914 (9) | C9—C10 | 1.519 (2) |
| C1—H1B | 0.9300 | C10—H10A | 0.9700 |
| C1—C8 | 1.3569 (18) | C10—H10B | 0.9700 |
| C2—C3 | 1.3988 (19) | C11—H11A | 0.9700 |
| C2—C7 | 1.4159 (17) | C11—H11B | 0.9700 |
| C3—H3 | 0.9300 | C11—C12 | 1.502 (3) |
| C3—C4 | 1.368 (2) | C12—H12A | 0.9600 |
| C4—H4 | 0.9300 | C12—H12B | 0.9600 |
| C4—C5 | 1.394 (2) | C12—H12C | 0.9600 |
| C6—O1—H1 | 116.7 (12) | C1—C8—C7 | 105.70 (11) |
| C1—N1—C2 | 108.59 (11) | C1—C8—C9 | 122.11 (12) |
| C1—N1—H1A | 124.3 (13) | C7—C8—C9 | 132.18 (11) |
| C2—N1—H1A | 126.7 (13) | C8—C9—H9A | 108.1 |
| C10—N2—H2 | 108.0 (11) | C8—C9—H9B | 108.1 |
| C11—N2—C10 | 114.23 (13) | C8—C9—C10 | 116.60 (11) |
| C11—N2—H2 | 107.4 (11) | H9A—C9—H9B | 107.3 |
| N1—C1—H1B | 124.3 | C10—C9—H9A | 108.1 |
| C8—C1—N1 | 111.32 (12) | C10—C9—H9B | 108.1 |
| C8—C1—H1B | 124.3 | N2—C10—C9 | 109.52 (11) |
| N1—C2—C3 | 128.68 (12) | N2—C10—H10A | 109.8 |
| N1—C2—C7 | 107.74 (11) | N2—C10—H10B | 109.8 |
| C3—C2—C7 | 123.58 (12) | C9—C10—H10A | 109.8 |
| C2—C3—H3 | 121.5 | C9—C10—H10B | 109.8 |
| C4—C3—C2 | 116.99 (12) | H10A—C10—H10B | 108.2 |
| C4—C3—H3 | 121.5 | N2—C11—H11A | 109.5 |
| C3—C4—H4 | 119.3 | N2—C11—H11B | 109.5 |
| C3—C4—C5 | 121.37 (13) | N2—C11—C12 | 110.58 (16) |
| C5—C4—H4 | 119.3 | H11A—C11—H11B | 108.1 |
| C4—C5—H5 | 119.0 | C12—C11—H11A | 109.5 |
| C6—C5—C4 | 122.04 (13) | C12—C11—H11B | 109.5 |
| C6—C5—H5 | 119.0 | C11—C12—H12A | 109.5 |
| O1—C6—C5 | 117.88 (12) | C11—C12—H12B | 109.5 |
| O1—C6—C7 | 123.38 (11) | C11—C12—H12C | 109.5 |
| C5—C6—C7 | 118.72 (12) | H12A—C12—H12B | 109.5 |
| C2—C7—C8 | 106.65 (11) | H12A—C12—H12C | 109.5 |
| C6—C7—C2 | 117.29 (11) | H12B—C12—H12C | 109.5 |
| C6—C7—C8 | 136.06 (11) | ||
| O1—C6—C7—C2 | 179.68 (12) | C3—C2—C7—C6 | −1.21 (19) |
| O1—C6—C7—C8 | 0.0 (2) | C3—C2—C7—C8 | 178.54 (12) |
| N1—C1—C8—C7 | −0.41 (15) | C3—C4—C5—C6 | −0.5 (2) |
| N1—C1—C8—C9 | 178.50 (12) | C4—C5—C6—O1 | −178.97 (13) |
| N1—C2—C3—C4 | 179.56 (14) | C4—C5—C6—C7 | −0.4 (2) |
| N1—C2—C7—C6 | 179.46 (11) | C5—C6—C7—C2 | 1.16 (18) |
| N1—C2—C7—C8 | −0.79 (14) | C5—C6—C7—C8 | −178.49 (13) |
| C1—N1—C2—C3 | −178.73 (14) | C6—C7—C8—C1 | −179.60 (14) |
| C1—N1—C2—C7 | 0.55 (15) | C6—C7—C8—C9 | 1.7 (2) |
| C1—C8—C9—C10 | 121.65 (15) | C7—C2—C3—C4 | 0.4 (2) |
| C2—N1—C1—C8 | −0.08 (16) | C7—C8—C9—C10 | −59.77 (19) |
| C2—C3—C4—C5 | 0.5 (2) | C8—C9—C10—N2 | 90.62 (14) |
| C2—C7—C8—C1 | 0.73 (14) | C10—N2—C11—C12 | −174.34 (14) |
| C2—C7—C8—C9 | −178.02 (13) | C11—N2—C10—C9 | −174.88 (12) |
3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···O1i | 0.87 (1) | 2.06 (1) | 2.8789 (15) | 158 (2) |
| O1—H1···N2 | 1.00 (1) | 1.58 (1) | 2.5764 (16) | 173 (2) |
Symmetry code: (i) x, −y+3/2, z+1/2.
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Crystal data
| C13H18N2O | F(000) = 472 |
| Mr = 218.29 | Dx = 1.206 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| a = 9.0478 (6) Å | Cell parameters from 8762 reflections |
| b = 11.6680 (8) Å | θ = 2.8–26.4° |
| c = 11.3885 (7) Å | µ = 0.08 mm−1 |
| β = 91.523 (2)° | T = 300 K |
| V = 1201.86 (14) Å3 | Block, colourless |
| Z = 4 | 0.24 × 0.22 × 0.21 mm |
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Data collection
| Bruker D8 Venture CMOS diffractometer | 1941 reflections with I > 2σ(I) |
| φ and ω scans | Rint = 0.040 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 26.4°, θmin = 2.8° |
| Tmin = 0.705, Tmax = 0.745 | h = −11→11 |
| 34791 measured reflections | k = −14→14 |
| 2472 independent reflections | l = −14→14 |
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Refinement
| Refinement on F2 | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.038 | w = 1/[σ2(Fo2) + (0.0476P)2 + 0.2229P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.107 | (Δ/σ)max < 0.001 |
| S = 1.01 | Δρmax = 0.14 e Å−3 |
| 2472 reflections | Δρmin = −0.11 e Å−3 |
| 159 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 3 restraints | Extinction coefficient: 0.010 (2) |
| Primary atom site location: dual |
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.67289 (11) | 0.65319 (8) | 0.46631 (9) | 0.0625 (3) | |
| N1 | 0.37615 (16) | 0.73704 (13) | 0.13702 (12) | 0.0744 (4) | |
| N2 | 0.65373 (13) | 0.43935 (10) | 0.40664 (11) | 0.0581 (3) | |
| C1 | 0.4626 (2) | 0.64513 (15) | 0.11322 (13) | 0.0727 (5) | |
| H1B | 0.459562 | 0.605365 | 0.042428 | 0.087* | |
| C2 | 0.41003 (15) | 0.77475 (12) | 0.24805 (12) | 0.0555 (4) | |
| C3 | 0.35237 (17) | 0.86658 (14) | 0.30944 (15) | 0.0664 (4) | |
| H3 | 0.279287 | 0.913394 | 0.276289 | 0.080* | |
| C4 | 0.40760 (18) | 0.88524 (13) | 0.42067 (15) | 0.0683 (4) | |
| H4 | 0.372585 | 0.946906 | 0.463557 | 0.082* | |
| C5 | 0.51543 (17) | 0.81379 (12) | 0.47138 (13) | 0.0610 (4) | |
| H5 | 0.549839 | 0.828481 | 0.547572 | 0.073* | |
| C6 | 0.57192 (14) | 0.72214 (11) | 0.41115 (11) | 0.0474 (3) | |
| C7 | 0.52103 (13) | 0.70145 (11) | 0.29519 (11) | 0.0459 (3) | |
| C8 | 0.55428 (15) | 0.61854 (12) | 0.20607 (11) | 0.0549 (3) | |
| C9 | 0.66469 (18) | 0.52272 (14) | 0.20690 (13) | 0.0671 (4) | |
| H9A | 0.759008 | 0.552462 | 0.235646 | 0.081* | |
| H9B | 0.677518 | 0.497638 | 0.126609 | 0.081* | |
| C10 | 0.62556 (19) | 0.41950 (13) | 0.28017 (15) | 0.0703 (4) | |
| H10A | 0.521883 | 0.401214 | 0.266863 | 0.084* | |
| H10B | 0.683237 | 0.354207 | 0.255279 | 0.084* | |
| C11 | 0.79192 (15) | 0.38631 (13) | 0.45205 (14) | 0.0606 (4) | |
| H11A | 0.873537 | 0.411109 | 0.404706 | 0.073* | |
| H11B | 0.784125 | 0.303640 | 0.445430 | 0.073* | |
| C12 | 0.82328 (17) | 0.41798 (14) | 0.57805 (14) | 0.0652 (4) | |
| H12A | 0.733916 | 0.407145 | 0.621928 | 0.078* | |
| H12B | 0.848746 | 0.498669 | 0.581958 | 0.078* | |
| C13 | 0.9464 (2) | 0.34963 (17) | 0.63607 (16) | 0.0825 (5) | |
| H13A | 0.960198 | 0.374269 | 0.716039 | 0.124* | |
| H13B | 1.036130 | 0.361400 | 0.594605 | 0.124* | |
| H13C | 0.921194 | 0.269711 | 0.634508 | 0.124* | |
| H1 | 0.664 (2) | 0.5715 (10) | 0.4388 (17) | 0.109 (7)* | |
| H1A | 0.3140 (18) | 0.7706 (16) | 0.0882 (14) | 0.097 (6)* | |
| H2 | 0.5807 (16) | 0.4070 (15) | 0.4476 (15) | 0.089 (6)* |
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0740 (6) | 0.0542 (6) | 0.0577 (6) | 0.0054 (5) | −0.0287 (5) | −0.0068 (4) |
| N1 | 0.0834 (9) | 0.0706 (9) | 0.0672 (8) | −0.0035 (7) | −0.0373 (7) | 0.0081 (7) |
| N2 | 0.0528 (7) | 0.0504 (7) | 0.0708 (8) | 0.0000 (5) | −0.0054 (6) | −0.0020 (6) |
| C1 | 0.0961 (12) | 0.0687 (10) | 0.0517 (8) | −0.0093 (9) | −0.0259 (8) | −0.0037 (7) |
| C2 | 0.0519 (7) | 0.0557 (8) | 0.0581 (8) | −0.0098 (6) | −0.0138 (6) | 0.0105 (6) |
| C3 | 0.0568 (8) | 0.0571 (9) | 0.0849 (11) | 0.0028 (7) | −0.0074 (7) | 0.0147 (8) |
| C4 | 0.0762 (10) | 0.0531 (8) | 0.0759 (10) | 0.0061 (7) | 0.0057 (8) | −0.0005 (7) |
| C5 | 0.0782 (10) | 0.0525 (8) | 0.0519 (8) | −0.0015 (7) | −0.0044 (7) | −0.0035 (6) |
| C6 | 0.0495 (7) | 0.0453 (7) | 0.0469 (7) | −0.0073 (5) | −0.0082 (5) | 0.0020 (5) |
| C7 | 0.0434 (6) | 0.0478 (7) | 0.0460 (7) | −0.0104 (5) | −0.0061 (5) | 0.0038 (5) |
| C8 | 0.0598 (8) | 0.0582 (8) | 0.0462 (7) | −0.0103 (6) | −0.0092 (6) | −0.0018 (6) |
| C9 | 0.0679 (9) | 0.0782 (11) | 0.0548 (8) | 0.0017 (8) | −0.0053 (7) | −0.0182 (7) |
| C10 | 0.0737 (10) | 0.0549 (9) | 0.0810 (11) | 0.0047 (7) | −0.0234 (8) | −0.0175 (8) |
| C11 | 0.0556 (8) | 0.0516 (8) | 0.0741 (10) | 0.0037 (6) | −0.0053 (7) | 0.0035 (7) |
| C12 | 0.0639 (9) | 0.0655 (9) | 0.0661 (9) | −0.0032 (7) | −0.0010 (7) | 0.0121 (7) |
| C13 | 0.0751 (11) | 0.0896 (13) | 0.0819 (11) | −0.0025 (9) | −0.0155 (9) | 0.0224 (10) |
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Geometric parameters (Å, º)
| O1—C6 | 1.3587 (15) | C6—C7 | 1.4078 (16) |
| O1—H1 | 1.006 (9) | C7—C8 | 1.4397 (19) |
| N1—C1 | 1.359 (2) | C8—C9 | 1.499 (2) |
| N1—C2 | 1.3659 (19) | C9—H9A | 0.9700 |
| N1—H1A | 0.873 (9) | C9—H9B | 0.9700 |
| N2—C10 | 1.474 (2) | C9—C10 | 1.513 (2) |
| N2—C11 | 1.4762 (18) | C10—H10A | 0.9700 |
| N2—H2 | 0.902 (9) | C10—H10B | 0.9700 |
| C1—H1B | 0.9300 | C11—H11A | 0.9700 |
| C1—C8 | 1.3623 (19) | C11—H11B | 0.9700 |
| C2—C3 | 1.389 (2) | C11—C12 | 1.501 (2) |
| C2—C7 | 1.4142 (18) | C12—H12A | 0.9700 |
| C3—H3 | 0.9300 | C12—H12B | 0.9700 |
| C3—C4 | 1.367 (2) | C12—C13 | 1.508 (2) |
| C4—H4 | 0.9300 | C13—H13A | 0.9600 |
| C4—C5 | 1.397 (2) | C13—H13B | 0.9600 |
| C5—H5 | 0.9300 | C13—H13C | 0.9600 |
| C5—C6 | 1.3763 (19) | ||
| C6—O1—H1 | 111.6 (12) | C8—C9—H9A | 108.4 |
| C1—N1—C2 | 108.83 (12) | C8—C9—H9B | 108.4 |
| C1—N1—H1A | 126.3 (13) | C8—C9—C10 | 115.57 (13) |
| C2—N1—H1A | 124.7 (13) | H9A—C9—H9B | 107.4 |
| C10—N2—C11 | 113.53 (12) | C10—C9—H9A | 108.4 |
| C10—N2—H2 | 109.3 (12) | C10—C9—H9B | 108.4 |
| C11—N2—H2 | 105.6 (12) | N2—C10—C9 | 112.14 (12) |
| N1—C1—H1B | 124.2 | N2—C10—H10A | 109.2 |
| N1—C1—C8 | 111.52 (14) | N2—C10—H10B | 109.2 |
| C8—C1—H1B | 124.2 | C9—C10—H10A | 109.2 |
| N1—C2—C3 | 129.54 (13) | C9—C10—H10B | 109.2 |
| N1—C2—C7 | 107.23 (13) | H10A—C10—H10B | 107.9 |
| C3—C2—C7 | 123.23 (13) | N2—C11—H11A | 109.3 |
| C2—C3—H3 | 121.4 | N2—C11—H11B | 109.3 |
| C4—C3—C2 | 117.17 (14) | N2—C11—C12 | 111.62 (13) |
| C4—C3—H3 | 121.4 | H11A—C11—H11B | 108.0 |
| C3—C4—H4 | 119.3 | C12—C11—H11A | 109.3 |
| C3—C4—C5 | 121.49 (15) | C12—C11—H11B | 109.3 |
| C5—C4—H4 | 119.3 | C11—C12—H12A | 108.7 |
| C4—C5—H5 | 119.3 | C11—C12—H12B | 108.7 |
| C6—C5—C4 | 121.49 (13) | C11—C12—C13 | 114.03 (14) |
| C6—C5—H5 | 119.3 | H12A—C12—H12B | 107.6 |
| O1—C6—C5 | 118.93 (11) | C13—C12—H12A | 108.7 |
| O1—C6—C7 | 122.09 (12) | C13—C12—H12B | 108.7 |
| C5—C6—C7 | 118.96 (12) | C12—C13—H13A | 109.5 |
| C2—C7—C8 | 107.36 (11) | C12—C13—H13B | 109.5 |
| C6—C7—C2 | 117.62 (12) | C12—C13—H13C | 109.5 |
| C6—C7—C8 | 135.02 (12) | H13A—C13—H13B | 109.5 |
| C1—C8—C7 | 105.06 (13) | H13A—C13—H13C | 109.5 |
| C1—C8—C9 | 124.52 (14) | H13B—C13—H13C | 109.5 |
| C7—C8—C9 | 130.41 (12) | ||
| O1—C6—C7—C2 | 176.68 (11) | C3—C2—C7—C6 | 1.52 (19) |
| O1—C6—C7—C8 | −2.7 (2) | C3—C2—C7—C8 | −178.94 (13) |
| N1—C1—C8—C7 | 0.13 (18) | C3—C4—C5—C6 | 0.7 (2) |
| N1—C1—C8—C9 | −179.06 (14) | C4—C5—C6—O1 | −177.74 (13) |
| N1—C2—C3—C4 | −179.79 (15) | C4—C5—C6—C7 | 1.0 (2) |
| N1—C2—C7—C6 | −178.60 (12) | C5—C6—C7—C2 | −2.00 (18) |
| N1—C2—C7—C8 | 0.94 (15) | C5—C6—C7—C8 | 178.62 (14) |
| N2—C11—C12—C13 | 169.17 (13) | C6—C7—C8—C1 | 178.77 (15) |
| C1—N1—C2—C3 | 179.00 (15) | C6—C7—C8—C9 | −2.1 (3) |
| C1—N1—C2—C7 | −0.87 (17) | C7—C2—C3—C4 | 0.1 (2) |
| C1—C8—C9—C10 | −107.09 (17) | C7—C8—C9—C10 | 73.94 (19) |
| C2—N1—C1—C8 | 0.5 (2) | C8—C9—C10—N2 | −77.85 (16) |
| C2—C3—C4—C5 | −1.2 (2) | C10—N2—C11—C12 | 174.61 (13) |
| C2—C7—C8—C1 | −0.65 (15) | C11—N2—C10—C9 | −101.41 (15) |
| C2—C7—C8—C9 | 178.47 (15) |
3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N2 | 1.01 (1) | 1.59 (1) | 2.5905 (15) | 175 (2) |
| N1—H1A···O1i | 0.87 (1) | 2.06 (1) | 2.9347 (16) | 177 (2) |
| N2—H2···O1ii | 0.90 (1) | 2.62 (1) | 3.4957 (17) | 166 (2) |
Symmetry codes: (i) x−1/2, −y+3/2, z−1/2; (ii) −x+1, −y+1, −z+1.
Funding Statement
Funding for this research was provided by: National Science Foundation, Directorate for Mathematical and Physical Sciences (grant No. CHE-1429086).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, 4-HO-NPT, 4-HO-NET. DOI: 10.1107/S2056989026008571/hb8250sup1.cif
Structure factors: contains datablock(s) 4-HO-NET. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.hkl
Structure factors: contains datablock(s) 4-HO-NPT. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.hkl
Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.cml
Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report
