Skip to main content
Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2026 Aug 25;82(Pt 9):1082–1086. doi: 10.1107/S2056989026008571

Syntheses and structures of two norpsilocin derivatives: N-ethyl-4-hy­droxy­tryptamine (4-HO-NET) and 4-hy­droxy-N-propyl­tryptamine (4-HO-NPT)

Marilyn Naeem a, Andrew R Chadeayne b, James A Golen a, David R Manke a,*
Editor: W T A Harrisonc
PMCID: PMC13548754  PMID: 42707931

The solid state structures of two synthetic N-monoalkytryptamine analogs of the ‘magic’ mushroom natural product norpsilocin are presented.

Keywords: crystal structure, tryptamines, indoles, hydrogen bonds

Abstract

The solid-state structures of N-ethyl-4-hy­droxy­tryptamine (4-HO-NET) {systematic name: 3-[2-(ethyl­amino)­eth­yl]-1H-indol-4-ol}, C12H16N2O, and 4-hy­droxy-N-propyl­tryptamine (4-HO-NPT) {systematic name: 3-[2-(propyl­amino)­eth­yl]-1H-indol-4-ol}, C13H18N2O, are reported. Both compounds possess a single tryptamine mol­ecule in the asymmetric unit that exhibits an inter­nal O—H⋯N hydrogen bond. In the extended structures, the mol­ecules are linked by N—H⋯O hydrogen bonds to form infinite chains along [001] for 4-HO-NET and along [101] for 4-HO-NPT.

1. Chemical context

Traditional psychoactive compounds including psilocybin (4-phosphor­yloxy-N,N-di­methyl­tryptamine; C12H17N2O4P), psilocin (4-hy­droxy-N,N-di­methyl­tryptamine; C12H16N2O), DMT (N,N-di­methyl­tryptamine; C12H16N2), and 5-MeO-DMT (5-meth­oxy-N,N-di­methyl­tryptamine; C13H18N2O) are all based upon an N,N-di­alkyl­tryptamine backbone. Lesser known naturally occurring compounds such as baeocystin (4-phosphor­yloxy-N-methyl­tryptamine; C11H15N2O4P) and norpsilocin (4-hy­droxy-N-methyl­tryptamine; C11H14N2O) have a suggested biological relevance but an underdeveloped chemistry. We have previously reported the crystal structures of both of these N-mono­alkyl­tryptamine compounds (Naeem et al., 2022 ▸; Chadeayne et al., 2020b ▸), as well as explored their pharmacological properties (Glatfelter, Pottie et al., 2022 ▸). The removal of a single methyl group from the traditional N,N-di­methyl­tryptamines can significantly alter lipophilicity, central nervous system exposure, metabolism, receptor activity and transporter pharmacology. The N-mono­alkyl­tryptamines are a group of serotonergic chemicals that could present pharmacology not accessible through the class of N,N-di­alkyl­tryptamines. In early 2023, we reported the synthesis and structure of 4-hy­droxy-N-iso­propyl­tryptamine (4-HO-NiPT) as the first direct N-alkyl analogue of norpsilocin (Laban et al., 2023 ▸). Sherwood and co-workers later reported a number of other N-alkyl analogues, exploring their pharmacology. Of note, derivatives of norpsilocin where the steric bulk of the alkyl group was increased (i.e. 4-HO-NiPT) showed psychoactive effects in animal models (Sherwood et al., 2024 ▸). We recently reported the 4-meth­oxy variant of norpsilocin, as well as other 4-meth­oxy mono-N-alkyl derivatives, which were shown to be potent 5-HT2A agonists with reduced psychedelic-like effects in animal models (Glatfelter, Schalk et al., 2026 ▸). Herein, we report the syntheses and structures of two norpsilocin analogues, N-ethyl-4-hy­droxy­tryptamine (4-HO-NET; C12H16N2O) and 4-hy­droxy-N-prop­yl­tryptamine (4-HO-NPT; C13H18N2O).1.

2. Structural commentary

The mol­ecular structures of 4-HO-NET and 4-HO-NPT are shown in Fig. 1 ▸. The asymmetric unit of each structure contains a single tryptamine mol­ecule. The side chain in 4-HO-NET displays an extended conformation, as shown by the C9—C10—N2—C11 and C10—N2—C11—C12 torsion angles of −174.88 (12) and −174.34 (14)°, respectively. The longer side chain in 4-HO-NPT shows a more twisted conformation with C9—C10—N2—C11 = −101.41 (15), C10—N1—C11—C12 = 174.61 (13) and N2—C11—C12—C13 = 169.17 (13)°.

Figure 1.

Figure 1

The mol­ecular structures of 4-HO-NET (left) and 4-HO-NPT (right) with displacement ellipsoids drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines.

Both mol­ecules possess an inter­nal O—H⋯N hydrogen bond between the phenol oxygen atom (O1) and the acyclic amine nitro­gen atom (N2), which generates an S(8) ring in each case. As expected, both C1–C8/N1 indole ring systems are near planar, showing a r.m.s. deviation of 0.009Å for 4-HO-NET and 0.011Å for 4-HO-NPT.

3. Supra­molecular features

In the solid-state structure of 4-HO-NET, the mol­ecules are linked by N1—H1A⋯O1 hydrogen bonds between the indole N—H grouping and the hydroxide group. These hydrogen bonds link the mol­ecules into infinite chains propagating along the [001] direction (Table 1 ▸). The crystal packing of 4-HO-NET is shown on the left in Fig. 2 ▸.

Table 1. Hydrogen-bond geometry (Å, °) for 4-HO-NET.

D—H⋯A D—H H⋯A D⋯A D—H⋯A
N1—H1A⋯O1i 0.87 (1) 2.06 (1) 2.8789 (15) 158 (2)
O1—H1⋯N2 1.00 (1) 1.58 (1) 2.5764 (16) 173 (2)

Symmetry code: (i) Inline graphic.

Figure 2.

Figure 2

The crystal packing of 4-HO-NET (left) and 4-HO-NPT (right), both shown along the a-axis direction. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding are omitted for clarity.

In the extended structure of 4-HO-NPT, two mol­ecules are connected through N2—H2⋯O1 hydrogen bonds. These inter­molecular hydrogen bonds combine with the O1—H1⋯N2 intra­molecular hydrogen bonds to form rings demonstrating a graph set notation of Inline graphic(16) (Etter et al., 1990 ▸). These dimers are then joined together through the indole N1—H1A⋯O1 hydrogen bond to the next dimer, forming infinite chains propagating along the [101] direction (Table 2 ▸). The crystal packing of 4-HO-NPT is shown on the right in Fig. 2 ▸.

Table 2. Hydrogen-bond geometry (Å, °) for 4-HO-NPT.

D—H⋯A D—H H⋯A D⋯A D—H⋯A
O1—H1⋯N2 1.01 (1) 1.59 (1) 2.5905 (15) 175 (2)
N1—H1A⋯O1i 0.87 (1) 2.06 (1) 2.9347 (16) 177 (2)
N2—H2⋯O1ii 0.90 (1) 2.62 (1) 3.4957 (17) 166 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

4. Database survey

The structures of mono­alkyl­tryptamines are not common in the Cambridge Structural Database, with only ten crystal structures previously reported, all in the past few years. These include the natural product baeocystin (Naeem et al., 2022 ▸; FETBAB), its hydrolysis product norpsilocin as its freebase and fumarate salt (Chadeayne et al., 2020b ▸; MULXAV, MULXEZ) and the synthetic prodrug of norpsilocin, 4-acet­oxy-N-methyl­tryptamine (Glatfelter, Pottie et al., 2022 ▸). The others are N-methyl­serotonin as its hydrogen oxalate salt (Naeem, Anas et al., 2023 ▸), 4-benzyl-N-iso­propyl­tryptamine, 4-hy­droxy-N-iso­propyl­tryptamine (Laban et al., 2023 ▸3; YEYZIP, YEYZOV), and the freebase, bromide and fumarate salts of N-cyclo­hexyl­tryptamine (Naeem, Le et al., 2023 ▸; YITWAD, YITWEH, YITWIL).

There are eight 4-hy­droxy-N,N-di­alkyl­tryptamine crystal structures reported in the literature, which are 4-hy­droxy-N-methyl-N-iso­propyl­tryptamine as its fumarate (Chadeayne et al., 2020a ▸; TUFQAP) and hydro­fumarate (Chadeayne et al., 2019a ▸; RONSUL), 4-hy­droxy-N,N-di­propyl­tryptamine as its fumarate (Chadeayne et al., 2019b ▸; WUCGAF) and chloride (Sammeta et al., 2020 ▸; WAMGEA) salts, 4-hy­droxy-N,N-diiso­propyl­tryptamine as its hydro­fumarate salt (Naeem et al., 2025 ▸; BOWSOF), and the natural product psilocin as its freebase (Petcher & Weber, 1974 ▸; PSILIN; Zeller et al., 2024 ▸; PSILIN03), its tatrate salt (Barrow et al., 2025 ▸; XOWXIU), and as a co-crystal with the natural product psilocybin (Silverstone, 2024 ▸; MIMKOM). There are also four 4-hy­droxy-N,N,N-tri­alkyl­tryptamine crystal structures reported including 4-hy­droxy-N,N,N-tri­methyl­tryptamine (Chadeayne et al., 2020c ▸; XUXFAA), 4-hy­droxy-N,N-dimethyl-N-ethyl­tryptamine, 4-hy­droxy-N,N-dimethyl-N-propyl­tryptamine, and 4-hy­droxy-N,N-dimethyl-N-iso­propyl­tryptamine (Glatfelter, Pham et al., 2022 ▸; EDOYIJ, EDOYUV, EDOZEG).

5. Synthesis and crystallization

4-HO-NET: To an ice-bath-cooled diethyl ether (60 ml) solution of 4-benz­yloxy-1H-indole (3.0 g) was added oxalylchloride (3.4 g) dropwise. The mixture was stirred in the ice bath for 6 h and then added dropwise to an ice-bath-cooled solution of 70% aqueous ethyl­amine (5.8 g). The mixture was warmed to room temperature and stirred overnight. The resulting suspension was concentrated under reduced pressure and the residue was purified by silica gel chromatography (methyl­ene chloride/methanol) to afford 2-(4-benz­yloxy)-1H-indol-3-yl)-N-ethyl-2-oxoacetamide as a yellow oil (3.2 g). The yellow oil was dissolved in tetra­hydro­furan (50 ml), cooled in an ice bath, and 30 ml of 1 M borane-tetra­hydro­furan was added dropwise. The mixture was heated at reflux overnight. The resulting yellow solution was quenched with 2 M hydro­chloric acid and heated at reflux for 2 h. The mixture was cooled and ammonium hydroxide was added until the solution was basic. The resulting mixture was extracted with methyl­ene chloride; the organic layer was washed with water and brine, and then dried over sodium sulfate. Solvent was removed in vacuo and the resulting residue was purified by silica gel chromatography [methyl­ene chloride/methanol (3.5 M ammonia)] to afford 4-benz­yloxy-N-ethyl­tryptamine (4-BnO-NET) as a yellow solid (1.6 g, 54% yield). To a solution of 4-BnO-NET (600 mg) in methanol (12 ml) was added Pd/C (120 mg) and Pd(OH)2/C (120 mg). The mixture was stirred for 3 h under a hydrogen atmosphere. The resulting black suspension was filtered, the solid was washed with methanol, and the combined filtrates were concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography [methyl­ene chloride/methanol (3.5 M ammonia)] to afford 4-hy­droxy-N-ethyl­tryptamine (4-HO-NET) as a white solid (162 mg, 39% yield). Single crystals suitable for X-ray diffraction were grown from the slow evaporation of an acetone solution.

4-HO-NPT: To an ice bath-cooled diethyl ether (40 ml) solution of 4-benz­yloxy-1H-indole (2.0 g) was added oxalylchloride (2.3 g) dropwise. The mixture was stirred for 6 h under cooling, and then added dropwise into an ice-bath cooled vessel containing propan-1-amine (5.3 g). The mixture was warmed to room temperature and stirred overnight. The solvent was removed in vacuo and the resulting residue was purified by silica gel chromatography (methyl­ene chloride/methanol) to afford 2-(4-benz­yloxy-1H-indol-3-yl)-2-oxo-N-propyl­acetamide as a yellow oil (1 g, 33% yield). This yellow oil was dissolved in tetra­hydro­furan (15 ml) and cooled in an ice bath, then 9 ml of 1.0 M borane-tetra­hydro­furan in tetra­hydro­furan was added dropwise. The mixture was heated at reflux for 2 h, cooled to room temperature, and then ammonium hydroxide was added until it was basic. The mixture was extracted with methyl­ene chloride and the organic phase was washed with water and brine. It was dried over sodium sulfate, then solvent was removed in vacuo, and purified by silica gel chromatography to yield 4-benz­yloxy-N-propyl­tryptamine (4-BnO-NPT) as a yellow solid (192 mg, 21% yield). To a solution of 4-BnO-NPT (190 mg) in methanol (4 ml) was added Pd/C (40 mg) and Pd(OH)2/C (40 mg). The mixture was stirred for 3 h under a hydrogen atmosphere. The resulting black suspension was filtered, the solid was washed with methanol, and the combined filtrates were concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography [methyl­ene chloride/methanol (3.5 M ammonia)] to afford 4-hy­droxy-N-propyl­tryptamine (4-HO-NPT) as a white solid (75 mg, 55% yield). Single crystals suitable for X-ray diffraction studies were grown from the slow evaporation of an acetone solution.

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. N- and O-bound H atoms were refined with restrained distances. C-bound H atoms were positioned geometrically (0.93–0.97 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C).

Table 3. Experimental details.

  4-HO-NET 4-HO-NPT
Crystal data
Chemical formula C12H16N2O C13H18N2O
M r 204.27 218.29
Crystal system, space group Monoclinic, P21/c Monoclinic, P21/n
Temperature (K) 300 300
a, b, c (Å) 8.3887 (5), 9.0776 (5), 14.5657 (9) 9.0478 (6), 11.6680 (8), 11.3885 (7)
β (°) 100.132 (2) 91.523 (2)
V (Å3) 1091.87 (11) 1201.86 (14)
Z 4 4
F(000) 440 472
Dx (Mg m−3) 1.243 1.206
Radiation type Mo Kα Mo Kα
No. of reflections for cell measurement 9957 8762
θ range (°) for cell measurement 2.7–26.3 2.8–26.4
μ (mm−1) 0.08 0.08
Crystal shape Block Block
Colour Yellow Colourless
Crystal size (mm) 0.27 × 0.21 × 0.20 0.24 × 0.22 × 0.21
 
Data collection
Diffractometer Bruker D8 Venture CMOS Bruker D8 Venture CMOS
Scan method φ and ω scans φ and ω scans
Absorption correction Multi-scan (SADABS; Krause et al., 2015 ▸) Multi-scan (SADABS; Krause et al., 2015 ▸)
Tmin, Tmax 0.704, 0.745 0.705, 0.745
No. of measured, independent and observed [I > 2σ(I)] reflections 23801, 2243, 1953 34791, 2472, 1941
R int 0.028 0.040
(sin θ/λ)max (Å−1) 0.625 0.626
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.040, 0.112, 1.05 0.038, 0.107, 1.01
No. of reflections 2243 2472
No. of parameters 150 159
No. of restraints 3 3
H-atom treatment H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.25, −0.13 0.14, −0.11

Computer programs: APEX3 and SAINT (Bruker, 2021 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸) and publCIF (Westrip, 2010 ▸).

Supplementary Material

Crystal structure: contains datablock(s) global, 4-HO-NPT, 4-HO-NET. DOI: 10.1107/S2056989026008571/hb8250sup1.cif

e-82-01082-sup1.cif (1.7MB, cif)

Structure factors: contains datablock(s) 4-HO-NET. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.hkl

Structure factors: contains datablock(s) 4-HO-NPT. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.hkl

Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.cml

Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.cml

CCDC references: 2581888, 2581887

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

Financial statements and conflict of inter­est: This study was funded by CaaMTech, Inc. ARC reports an ownership inter­est in CaaMTech, Inc., which owns US and worldwide patent applications, covering new tryptamine compounds, compositions, formulations, novel crystalline forms, and methods of making and using the same.

supplementary crystallographic information

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Crystal data

C12H16N2O F(000) = 440
Mr = 204.27 Dx = 1.243 Mg m−3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
a = 8.3887 (5) Å Cell parameters from 9957 reflections
b = 9.0776 (5) Å θ = 2.7–26.3°
c = 14.5657 (9) Å µ = 0.08 mm−1
β = 100.132 (2)° T = 300 K
V = 1091.87 (11) Å3 Block, yellow
Z = 4 0.27 × 0.21 × 0.20 mm

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Data collection

Bruker D8 Venture CMOS diffractometer 1953 reflections with I > 2σ(I)
φ and ω scans Rint = 0.028
Absorption correction: multi-scan (SADABS; Krause et al., 2015) θmax = 26.4°, θmin = 2.7°
Tmin = 0.704, Tmax = 0.745 h = −10→10
23801 measured reflections k = −11→11
2243 independent reflections l = −18→18

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Refinement

Refinement on F2 Hydrogen site location: mixed
Least-squares matrix: full H atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.040 w = 1/[σ2(Fo2) + (0.0518P)2 + 0.3161P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.112 (Δ/σ)max < 0.001
S = 1.05 Δρmax = 0.25 e Å−3
2243 reflections Δρmin = −0.13 e Å−3
150 parameters Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
3 restraints Extinction coefficient: 0.007 (2)
Primary atom site location: dual

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.26670 (16) 0.64120 (12) 0.59539 (6) 0.0558 (3)
N1 0.24109 (16) 0.75788 (14) 0.90599 (8) 0.0457 (3)
N2 0.35265 (16) 0.37322 (13) 0.63603 (9) 0.0457 (3)
C1 0.32861 (17) 0.63081 (16) 0.90504 (9) 0.0425 (3)
H1B 0.373600 0.578230 0.958099 0.051*
C2 0.19401 (15) 0.80509 (14) 0.81596 (9) 0.0365 (3)
C3 0.10539 (17) 0.93092 (16) 0.78357 (10) 0.0444 (3)
H3 0.068680 0.996395 0.824333 0.053*
C4 0.07518 (17) 0.95333 (16) 0.68926 (11) 0.0462 (4)
H4 0.017317 1.036282 0.665300 0.055*
C5 0.12934 (17) 0.85438 (15) 0.62827 (10) 0.0439 (3)
H5 0.105785 0.872798 0.564516 0.053*
C6 0.21698 (16) 0.72971 (14) 0.65966 (9) 0.0362 (3)
C7 0.25324 (14) 0.70272 (13) 0.75676 (8) 0.0313 (3)
C8 0.34133 (15) 0.59139 (14) 0.81676 (9) 0.0354 (3)
C9 0.43485 (16) 0.45785 (15) 0.79633 (10) 0.0422 (3)
H9A 0.480105 0.411568 0.855178 0.051*
H9B 0.524860 0.490499 0.767807 0.051*
C10 0.34164 (18) 0.34175 (15) 0.73357 (10) 0.0451 (3)
H10A 0.386353 0.245039 0.750729 0.054*
H10B 0.229064 0.342004 0.741166 0.054*
C11 0.2549 (2) 0.2752 (2) 0.56823 (13) 0.0634 (5)
H11A 0.140925 0.290158 0.569964 0.076*
H11B 0.281328 0.173480 0.584668 0.076*
C12 0.2861 (3) 0.3053 (2) 0.47154 (13) 0.0805 (6)
H12A 0.219642 0.241769 0.427983 0.121*
H12B 0.398139 0.287178 0.469347 0.121*
H12C 0.260572 0.406187 0.455488 0.121*
H1A 0.229 (2) 0.8046 (19) 0.9562 (9) 0.067 (5)*
H1 0.301 (2) 0.5388 (13) 0.6159 (14) 0.086 (6)*
H2 0.4583 (12) 0.3621 (19) 0.6293 (12) 0.062 (5)*

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0953 (9) 0.0449 (6) 0.0303 (5) 0.0192 (6) 0.0194 (5) 0.0045 (4)
N1 0.0593 (7) 0.0476 (7) 0.0307 (6) 0.0011 (6) 0.0096 (5) −0.0077 (5)
N2 0.0504 (7) 0.0407 (6) 0.0468 (7) 0.0037 (5) 0.0102 (5) −0.0051 (5)
C1 0.0493 (8) 0.0449 (7) 0.0316 (6) −0.0017 (6) 0.0026 (5) 0.0025 (5)
C2 0.0374 (6) 0.0373 (7) 0.0355 (6) −0.0048 (5) 0.0084 (5) −0.0039 (5)
C3 0.0433 (7) 0.0399 (7) 0.0518 (8) 0.0043 (6) 0.0126 (6) −0.0084 (6)
C4 0.0419 (7) 0.0383 (7) 0.0576 (9) 0.0073 (6) 0.0067 (6) 0.0052 (6)
C5 0.0491 (8) 0.0437 (7) 0.0377 (7) 0.0039 (6) 0.0046 (6) 0.0064 (6)
C6 0.0426 (7) 0.0344 (6) 0.0324 (6) −0.0008 (5) 0.0088 (5) 0.0010 (5)
C7 0.0319 (6) 0.0308 (6) 0.0320 (6) −0.0038 (5) 0.0074 (5) 0.0000 (5)
C8 0.0374 (6) 0.0358 (6) 0.0331 (6) −0.0028 (5) 0.0063 (5) 0.0021 (5)
C9 0.0438 (7) 0.0401 (7) 0.0424 (7) 0.0062 (6) 0.0065 (6) 0.0060 (6)
C10 0.0524 (8) 0.0341 (7) 0.0512 (8) 0.0051 (6) 0.0159 (6) 0.0025 (6)
C11 0.0675 (11) 0.0538 (9) 0.0665 (11) 0.0006 (8) 0.0049 (8) −0.0181 (8)
C12 0.1077 (17) 0.0721 (13) 0.0539 (10) 0.0148 (12) −0.0069 (10) −0.0130 (9)

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Geometric parameters (Å, º)

O1—C6 1.3539 (16) C5—H5 0.9300
O1—H1 1.003 (9) C5—C6 1.3827 (19)
N1—C1 1.3687 (19) C6—C7 1.4147 (17)
N1—C2 1.3700 (17) C7—C8 1.4506 (17)
N1—H1A 0.867 (9) C8—C9 1.5018 (18)
N2—C10 1.4679 (19) C9—H9A 0.9700
N2—C11 1.468 (2) C9—H9B 0.9700
N2—H2 0.914 (9) C9—C10 1.519 (2)
C1—H1B 0.9300 C10—H10A 0.9700
C1—C8 1.3569 (18) C10—H10B 0.9700
C2—C3 1.3988 (19) C11—H11A 0.9700
C2—C7 1.4159 (17) C11—H11B 0.9700
C3—H3 0.9300 C11—C12 1.502 (3)
C3—C4 1.368 (2) C12—H12A 0.9600
C4—H4 0.9300 C12—H12B 0.9600
C4—C5 1.394 (2) C12—H12C 0.9600
C6—O1—H1 116.7 (12) C1—C8—C7 105.70 (11)
C1—N1—C2 108.59 (11) C1—C8—C9 122.11 (12)
C1—N1—H1A 124.3 (13) C7—C8—C9 132.18 (11)
C2—N1—H1A 126.7 (13) C8—C9—H9A 108.1
C10—N2—H2 108.0 (11) C8—C9—H9B 108.1
C11—N2—C10 114.23 (13) C8—C9—C10 116.60 (11)
C11—N2—H2 107.4 (11) H9A—C9—H9B 107.3
N1—C1—H1B 124.3 C10—C9—H9A 108.1
C8—C1—N1 111.32 (12) C10—C9—H9B 108.1
C8—C1—H1B 124.3 N2—C10—C9 109.52 (11)
N1—C2—C3 128.68 (12) N2—C10—H10A 109.8
N1—C2—C7 107.74 (11) N2—C10—H10B 109.8
C3—C2—C7 123.58 (12) C9—C10—H10A 109.8
C2—C3—H3 121.5 C9—C10—H10B 109.8
C4—C3—C2 116.99 (12) H10A—C10—H10B 108.2
C4—C3—H3 121.5 N2—C11—H11A 109.5
C3—C4—H4 119.3 N2—C11—H11B 109.5
C3—C4—C5 121.37 (13) N2—C11—C12 110.58 (16)
C5—C4—H4 119.3 H11A—C11—H11B 108.1
C4—C5—H5 119.0 C12—C11—H11A 109.5
C6—C5—C4 122.04 (13) C12—C11—H11B 109.5
C6—C5—H5 119.0 C11—C12—H12A 109.5
O1—C6—C5 117.88 (12) C11—C12—H12B 109.5
O1—C6—C7 123.38 (11) C11—C12—H12C 109.5
C5—C6—C7 118.72 (12) H12A—C12—H12B 109.5
C2—C7—C8 106.65 (11) H12A—C12—H12C 109.5
C6—C7—C2 117.29 (11) H12B—C12—H12C 109.5
C6—C7—C8 136.06 (11)
O1—C6—C7—C2 179.68 (12) C3—C2—C7—C6 −1.21 (19)
O1—C6—C7—C8 0.0 (2) C3—C2—C7—C8 178.54 (12)
N1—C1—C8—C7 −0.41 (15) C3—C4—C5—C6 −0.5 (2)
N1—C1—C8—C9 178.50 (12) C4—C5—C6—O1 −178.97 (13)
N1—C2—C3—C4 179.56 (14) C4—C5—C6—C7 −0.4 (2)
N1—C2—C7—C6 179.46 (11) C5—C6—C7—C2 1.16 (18)
N1—C2—C7—C8 −0.79 (14) C5—C6—C7—C8 −178.49 (13)
C1—N1—C2—C3 −178.73 (14) C6—C7—C8—C1 −179.60 (14)
C1—N1—C2—C7 0.55 (15) C6—C7—C8—C9 1.7 (2)
C1—C8—C9—C10 121.65 (15) C7—C2—C3—C4 0.4 (2)
C2—N1—C1—C8 −0.08 (16) C7—C8—C9—C10 −59.77 (19)
C2—C3—C4—C5 0.5 (2) C8—C9—C10—N2 90.62 (14)
C2—C7—C8—C1 0.73 (14) C10—N2—C11—C12 −174.34 (14)
C2—C7—C8—C9 −178.02 (13) C11—N2—C10—C9 −174.88 (12)

3-[2-(Ethylamino)ethyl]-1H-indol-4-ol (4-HO-NET) . Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1A···O1i 0.87 (1) 2.06 (1) 2.8789 (15) 158 (2)
O1—H1···N2 1.00 (1) 1.58 (1) 2.5764 (16) 173 (2)

Symmetry code: (i) x, −y+3/2, z+1/2.

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Crystal data

C13H18N2O F(000) = 472
Mr = 218.29 Dx = 1.206 Mg m−3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
a = 9.0478 (6) Å Cell parameters from 8762 reflections
b = 11.6680 (8) Å θ = 2.8–26.4°
c = 11.3885 (7) Å µ = 0.08 mm−1
β = 91.523 (2)° T = 300 K
V = 1201.86 (14) Å3 Block, colourless
Z = 4 0.24 × 0.22 × 0.21 mm

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Data collection

Bruker D8 Venture CMOS diffractometer 1941 reflections with I > 2σ(I)
φ and ω scans Rint = 0.040
Absorption correction: multi-scan (SADABS; Krause et al., 2015) θmax = 26.4°, θmin = 2.8°
Tmin = 0.705, Tmax = 0.745 h = −11→11
34791 measured reflections k = −14→14
2472 independent reflections l = −14→14

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Refinement

Refinement on F2 Hydrogen site location: mixed
Least-squares matrix: full H atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.038 w = 1/[σ2(Fo2) + (0.0476P)2 + 0.2229P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.107 (Δ/σ)max < 0.001
S = 1.01 Δρmax = 0.14 e Å−3
2472 reflections Δρmin = −0.11 e Å−3
159 parameters Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
3 restraints Extinction coefficient: 0.010 (2)
Primary atom site location: dual

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.67289 (11) 0.65319 (8) 0.46631 (9) 0.0625 (3)
N1 0.37615 (16) 0.73704 (13) 0.13702 (12) 0.0744 (4)
N2 0.65373 (13) 0.43935 (10) 0.40664 (11) 0.0581 (3)
C1 0.4626 (2) 0.64513 (15) 0.11322 (13) 0.0727 (5)
H1B 0.459562 0.605365 0.042428 0.087*
C2 0.41003 (15) 0.77475 (12) 0.24805 (12) 0.0555 (4)
C3 0.35237 (17) 0.86658 (14) 0.30944 (15) 0.0664 (4)
H3 0.279287 0.913394 0.276289 0.080*
C4 0.40760 (18) 0.88524 (13) 0.42067 (15) 0.0683 (4)
H4 0.372585 0.946906 0.463557 0.082*
C5 0.51543 (17) 0.81379 (12) 0.47138 (13) 0.0610 (4)
H5 0.549839 0.828481 0.547572 0.073*
C6 0.57192 (14) 0.72214 (11) 0.41115 (11) 0.0474 (3)
C7 0.52103 (13) 0.70145 (11) 0.29519 (11) 0.0459 (3)
C8 0.55428 (15) 0.61854 (12) 0.20607 (11) 0.0549 (3)
C9 0.66469 (18) 0.52272 (14) 0.20690 (13) 0.0671 (4)
H9A 0.759008 0.552462 0.235646 0.081*
H9B 0.677518 0.497638 0.126609 0.081*
C10 0.62556 (19) 0.41950 (13) 0.28017 (15) 0.0703 (4)
H10A 0.521883 0.401214 0.266863 0.084*
H10B 0.683237 0.354207 0.255279 0.084*
C11 0.79192 (15) 0.38631 (13) 0.45205 (14) 0.0606 (4)
H11A 0.873537 0.411109 0.404706 0.073*
H11B 0.784125 0.303640 0.445430 0.073*
C12 0.82328 (17) 0.41798 (14) 0.57805 (14) 0.0652 (4)
H12A 0.733916 0.407145 0.621928 0.078*
H12B 0.848746 0.498669 0.581958 0.078*
C13 0.9464 (2) 0.34963 (17) 0.63607 (16) 0.0825 (5)
H13A 0.960198 0.374269 0.716039 0.124*
H13B 1.036130 0.361400 0.594605 0.124*
H13C 0.921194 0.269711 0.634508 0.124*
H1 0.664 (2) 0.5715 (10) 0.4388 (17) 0.109 (7)*
H1A 0.3140 (18) 0.7706 (16) 0.0882 (14) 0.097 (6)*
H2 0.5807 (16) 0.4070 (15) 0.4476 (15) 0.089 (6)*

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0740 (6) 0.0542 (6) 0.0577 (6) 0.0054 (5) −0.0287 (5) −0.0068 (4)
N1 0.0834 (9) 0.0706 (9) 0.0672 (8) −0.0035 (7) −0.0373 (7) 0.0081 (7)
N2 0.0528 (7) 0.0504 (7) 0.0708 (8) 0.0000 (5) −0.0054 (6) −0.0020 (6)
C1 0.0961 (12) 0.0687 (10) 0.0517 (8) −0.0093 (9) −0.0259 (8) −0.0037 (7)
C2 0.0519 (7) 0.0557 (8) 0.0581 (8) −0.0098 (6) −0.0138 (6) 0.0105 (6)
C3 0.0568 (8) 0.0571 (9) 0.0849 (11) 0.0028 (7) −0.0074 (7) 0.0147 (8)
C4 0.0762 (10) 0.0531 (8) 0.0759 (10) 0.0061 (7) 0.0057 (8) −0.0005 (7)
C5 0.0782 (10) 0.0525 (8) 0.0519 (8) −0.0015 (7) −0.0044 (7) −0.0035 (6)
C6 0.0495 (7) 0.0453 (7) 0.0469 (7) −0.0073 (5) −0.0082 (5) 0.0020 (5)
C7 0.0434 (6) 0.0478 (7) 0.0460 (7) −0.0104 (5) −0.0061 (5) 0.0038 (5)
C8 0.0598 (8) 0.0582 (8) 0.0462 (7) −0.0103 (6) −0.0092 (6) −0.0018 (6)
C9 0.0679 (9) 0.0782 (11) 0.0548 (8) 0.0017 (8) −0.0053 (7) −0.0182 (7)
C10 0.0737 (10) 0.0549 (9) 0.0810 (11) 0.0047 (7) −0.0234 (8) −0.0175 (8)
C11 0.0556 (8) 0.0516 (8) 0.0741 (10) 0.0037 (6) −0.0053 (7) 0.0035 (7)
C12 0.0639 (9) 0.0655 (9) 0.0661 (9) −0.0032 (7) −0.0010 (7) 0.0121 (7)
C13 0.0751 (11) 0.0896 (13) 0.0819 (11) −0.0025 (9) −0.0155 (9) 0.0224 (10)

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Geometric parameters (Å, º)

O1—C6 1.3587 (15) C6—C7 1.4078 (16)
O1—H1 1.006 (9) C7—C8 1.4397 (19)
N1—C1 1.359 (2) C8—C9 1.499 (2)
N1—C2 1.3659 (19) C9—H9A 0.9700
N1—H1A 0.873 (9) C9—H9B 0.9700
N2—C10 1.474 (2) C9—C10 1.513 (2)
N2—C11 1.4762 (18) C10—H10A 0.9700
N2—H2 0.902 (9) C10—H10B 0.9700
C1—H1B 0.9300 C11—H11A 0.9700
C1—C8 1.3623 (19) C11—H11B 0.9700
C2—C3 1.389 (2) C11—C12 1.501 (2)
C2—C7 1.4142 (18) C12—H12A 0.9700
C3—H3 0.9300 C12—H12B 0.9700
C3—C4 1.367 (2) C12—C13 1.508 (2)
C4—H4 0.9300 C13—H13A 0.9600
C4—C5 1.397 (2) C13—H13B 0.9600
C5—H5 0.9300 C13—H13C 0.9600
C5—C6 1.3763 (19)
C6—O1—H1 111.6 (12) C8—C9—H9A 108.4
C1—N1—C2 108.83 (12) C8—C9—H9B 108.4
C1—N1—H1A 126.3 (13) C8—C9—C10 115.57 (13)
C2—N1—H1A 124.7 (13) H9A—C9—H9B 107.4
C10—N2—C11 113.53 (12) C10—C9—H9A 108.4
C10—N2—H2 109.3 (12) C10—C9—H9B 108.4
C11—N2—H2 105.6 (12) N2—C10—C9 112.14 (12)
N1—C1—H1B 124.2 N2—C10—H10A 109.2
N1—C1—C8 111.52 (14) N2—C10—H10B 109.2
C8—C1—H1B 124.2 C9—C10—H10A 109.2
N1—C2—C3 129.54 (13) C9—C10—H10B 109.2
N1—C2—C7 107.23 (13) H10A—C10—H10B 107.9
C3—C2—C7 123.23 (13) N2—C11—H11A 109.3
C2—C3—H3 121.4 N2—C11—H11B 109.3
C4—C3—C2 117.17 (14) N2—C11—C12 111.62 (13)
C4—C3—H3 121.4 H11A—C11—H11B 108.0
C3—C4—H4 119.3 C12—C11—H11A 109.3
C3—C4—C5 121.49 (15) C12—C11—H11B 109.3
C5—C4—H4 119.3 C11—C12—H12A 108.7
C4—C5—H5 119.3 C11—C12—H12B 108.7
C6—C5—C4 121.49 (13) C11—C12—C13 114.03 (14)
C6—C5—H5 119.3 H12A—C12—H12B 107.6
O1—C6—C5 118.93 (11) C13—C12—H12A 108.7
O1—C6—C7 122.09 (12) C13—C12—H12B 108.7
C5—C6—C7 118.96 (12) C12—C13—H13A 109.5
C2—C7—C8 107.36 (11) C12—C13—H13B 109.5
C6—C7—C2 117.62 (12) C12—C13—H13C 109.5
C6—C7—C8 135.02 (12) H13A—C13—H13B 109.5
C1—C8—C7 105.06 (13) H13A—C13—H13C 109.5
C1—C8—C9 124.52 (14) H13B—C13—H13C 109.5
C7—C8—C9 130.41 (12)
O1—C6—C7—C2 176.68 (11) C3—C2—C7—C6 1.52 (19)
O1—C6—C7—C8 −2.7 (2) C3—C2—C7—C8 −178.94 (13)
N1—C1—C8—C7 0.13 (18) C3—C4—C5—C6 0.7 (2)
N1—C1—C8—C9 −179.06 (14) C4—C5—C6—O1 −177.74 (13)
N1—C2—C3—C4 −179.79 (15) C4—C5—C6—C7 1.0 (2)
N1—C2—C7—C6 −178.60 (12) C5—C6—C7—C2 −2.00 (18)
N1—C2—C7—C8 0.94 (15) C5—C6—C7—C8 178.62 (14)
N2—C11—C12—C13 169.17 (13) C6—C7—C8—C1 178.77 (15)
C1—N1—C2—C3 179.00 (15) C6—C7—C8—C9 −2.1 (3)
C1—N1—C2—C7 −0.87 (17) C7—C2—C3—C4 0.1 (2)
C1—C8—C9—C10 −107.09 (17) C7—C8—C9—C10 73.94 (19)
C2—N1—C1—C8 0.5 (2) C8—C9—C10—N2 −77.85 (16)
C2—C3—C4—C5 −1.2 (2) C10—N2—C11—C12 174.61 (13)
C2—C7—C8—C1 −0.65 (15) C11—N2—C10—C9 −101.41 (15)
C2—C7—C8—C9 178.47 (15)

3-[2-(Propylamino)ethyl]-1H-indol-4-ol (4-HO-NPT) . Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1···N2 1.01 (1) 1.59 (1) 2.5905 (15) 175 (2)
N1—H1A···O1i 0.87 (1) 2.06 (1) 2.9347 (16) 177 (2)
N2—H2···O1ii 0.90 (1) 2.62 (1) 3.4957 (17) 166 (2)

Symmetry codes: (i) x−1/2, −y+3/2, z−1/2; (ii) −x+1, −y+1, −z+1.

Funding Statement

Funding for this research was provided by: National Science Foundation, Directorate for Mathematical and Physical Sciences (grant No. CHE-1429086).

References

  1. Barrow, R., Mack, P., Schneider, S. E., Schroeder, J. & Jones, G. S. Jr (2025). US Patent Appl. No. 19/023,132. Washington, DC: U. S. Patent and Trademark Office.
  2. Bruker (2021). APEX3 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Chadeayne, A. R., Pham, D. N. K., Golen, J. A. & Manke, D. R. (2019a). Acta Cryst. E75, 1316–1320. [DOI] [PMC free article] [PubMed]
  4. Chadeayne, A. R., Pham, D. N. K., Golen, J. A. & Manke, D. R. (2019b). IUCrData4, x191469.
  5. Chadeayne, A. R., Pham, D. N. K., Golen, J. A. & Manke, D. R. (2020a). Acta Cryst. E76, 514–517. [DOI] [PMC free article] [PubMed]
  6. Chadeayne, A. R., Pham, D. N. K., Golen, J. A. & Manke, D. R. (2020b). Acta Cryst. E76, 589–593. [DOI] [PMC free article] [PubMed]
  7. Chadeayne, A. R., Pham, D. N. K., Reid, B. G., Golen, J. A. & Manke, D. R. (2020c). ACS Omega5, 16940–16943. [DOI] [PMC free article] [PubMed]
  8. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst.42, 339–341.
  9. Etter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256–262. [DOI] [PubMed]
  10. Glatfelter, G., Pham, D. N. K., Walther, D., Golen, J. A., Chadeayne, A. R., Baumann, M. H. & Manke, D. R. (2022). ACS Omega7, 24888–24894. [DOI] [PMC free article] [PubMed]
  11. Glatfelter, G., Pottie, E., Partilla, J. S., Sherwood, A. M., Kaylo, K., Pham, D. N. K., Naeem, M., Sammeta, V. R., DeBoer, S., Golen, J. A., Hulley, E. B., Stove, C. P., Chadeayne, A. R., Manke, D. R. & Baumann, M. H. (2022). ACS Pharmacol. Transl. Sci.5, 1181–1196. [DOI] [PMC free article] [PubMed]
  12. Glatfelter, G. C., Schalk, S. S., Walther, D., Maitland, A. D., Gonzalez, N. R., Partilla, J. S., Anas, N. A., Chadeayne, A. R., Naeem, M., Manke, D. R., McCorvy, J. D. & Baumann, M. H. (2026). ACS Chem. Neurosci.17, 2348–2363. [DOI] [PMC free article] [PubMed]
  13. Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst.48, 3–10. [DOI] [PMC free article] [PubMed]
  14. Laban, U., Naeem, M., Chadeayne, A. R., Golen, J. A. & Manke, D. R. (2023). Acta Cryst. E79, 280–286. [DOI] [PMC free article] [PubMed]
  15. Naeem, M., Anas, N. A., Chadeayne, A. R., Golen, J. A. & Manke, D. R. (2023). IUCrData8, x230378. [DOI] [PMC free article] [PubMed]
  16. Naeem, M., Chadeayne, A. R., Golen, J. A. & Manke, D. R. (2025). IUCrData10, x250564. [DOI] [PMC free article] [PubMed]
  17. Naeem, M., Le, A. N., Bauer, B. E., Chadeayne, A. R., Golen, J. A. & Manke, D. R. (2023). Acta Cryst. E79, 752–756. [DOI] [PMC free article] [PubMed]
  18. Naeem, M., Sherwood, A. M., Chadeayne, A. R., Golen, J. A. & Manke, D. R. (2022). Acta Cryst. E78, 550–553. [DOI] [PMC free article] [PubMed]
  19. Petcher, T. J. & Weber, H. P. (1974). J. Chem. Soc. Perkin Trans. 2 pp. 946–948.
  20. Sammeta, V. R., Rasapalli, S., Chadeayne, A. R., Golen, J. A. & Manke, D. R. (2020). IUCrData5, x201546. [DOI] [PMC free article] [PubMed]
  21. Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
  22. Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
  23. Sherwood, A. M., Burkhartzmeyer, E. K., Williamson, S. E., Baumann, M. H. & Glatfelter, G. C. (2024). ACS Chem. Neurosci.15, 315–327. [DOI] [PMC free article] [PubMed]
  24. Silverstone, P. (2024). US Patent Appl. No. 18/742,840. Washington, DC: U. S. Patent and Trademark Office.
  25. Westrip, S. P. (2010). J. Appl. Cryst.43, 920–925.
  26. Zeller, M., Parent, S. & Schultheiss, N. (2024). Acta Cryst. E80, 590–595. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, 4-HO-NPT, 4-HO-NET. DOI: 10.1107/S2056989026008571/hb8250sup1.cif

e-82-01082-sup1.cif (1.7MB, cif)

Structure factors: contains datablock(s) 4-HO-NET. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.hkl

Structure factors: contains datablock(s) 4-HO-NPT. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.hkl

Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NETsup4.cml

Supporting information file. DOI: 10.1107/S2056989026008571/hb82504-HO-NPTsup5.cml

CCDC references: 2581888, 2581887

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

RESOURCES