Skip to main content
Journal of Oral Microbiology logoLink to Journal of Oral Microbiology
. 2026 Sep 24;18(1):2732737. doi: 10.1080/20002297.2026.2732737

Effects of Berberine chloride hydrate on cariogenic multispecies streptococcal biofilm

Yang Zhou a,b, Guxin Cui a,b, Fang Huang a,b,*, Huancai Lin a,b,*
PMCID: PMC13618191  PMID: 42807888

Abstract

Background

Dental caries, a bacterial infectious disease related to biofilm, occurs due to an increase in the proportion of cariogenic bacteria over that of commensal bacteria. This study aimed to create an in vitro biofilm model consisting of S. sanguinis, S. gordonii, and S. mutans to study the effects of Berberine chloride hydrate (BH) on the structure and cariogenic features of multispecies biofilms.

Materials and methods

The biofilm formation and cariogenic characteristics of multispecies streptococci biofilms were observed. The microbial composition of multispecies biofilms was quantified using fluorescent in situ hybridization (FISH). Besides, transcriptome analysis was performed to determine the differential expression levels of genes in each strain in multispecies biofilms with or without BH. The demineralization activity of biofilms treated with BH was analyzed using micro-CT.

Results

BH had the highest efficacy against S. mutans, exhibiting lower minimum inhibitory concentration (MIC) and minimum biofilm inhibitory concentration (MBIC) values relative to S. sanguinis and S. gordonii. BH inhibited the biofilm formation as well as EPS synthesis in multispecies biofilms, resulting in decreased demineralization on bovine enamel surfaces. In addition, after BH treatment, the abundance of S. sanguinis and S. mutans was reduced, whereas the abundance of S. gordonii increased.

Conclusion

BH revealed great potential for the management of cariogenic biofilm, indicating its possible application in dental caries therapy.

Keywords: Streptococcus gordonii, Streptococcus mutans, Streptococcus sanguinis, biofilms, Berberine chloride hydrate

Key messages

  • BH had the highest efficacy against S. mutans, exhibiting lower MIC and MBIC values relative to S. gordonii and S. sanguinis.

  • BH inhibited the biofilm formation as well as EPS synthesis in multispecies biofilms. The demineralizing activity at the biofilm/enamel interface was reduced in BH-treated multispecies biofilms.

  • BH changed the composition of multispecies biofilms, with S. gordonii outcompeted S. sanguinis and S. mutans.

Introduction

Dental caries, a bacterial infectious disease related to biofilm, arises from biofilm dysbiosis and causes economic and psychological burdens on society [1]. The Global Burden of Disease Study 2017 reported that there were 3.5 billion instances of oral diseases globally, with 2.3 billion of these cases being untreated caries in permanent teeth [2]. Dental plaque is a biofilm that includes diverse bacteria and an extracellular matrix [3]. In general, plaque biofilms contain a mix of pathogenic and non-pathogenic bacteria, with intricate interactions and competition among the microbial communities [4]. Biofilms typically maintain an ecological balance among their different species under healthy conditions [5], which can be disrupted by environmental influences and interactions between species, leading to a shift in the proportion of acidogenic and aciduric bacteria, such as Streptococcus mutans (S. mutans) [6]. A higher concentration of cariogenic bacteria in plaque biofilm enhances the synthesis of the extracellular matrix and acidifies the microenvironment, which results in enamel demineralization and caries formation [7,8]. Inhibiting the colonization and virulence of cariogenic bacteria is essential for the prevention of dental caries [9].

Dental plaque formation begins with oral streptococci, characterized by a specific timing and spatial arrangement crucial for dental biofilm development [10]. As is known, S. mutans is identified as a primary cariogenic bacterium causing dental caries, attributed to its acidogenic and aciduric properties, in addition to its capacity to create exopolysaccharides (EPS) that promote microbial attachment to teeth [6]. Once S. mutans initially attaches to the tooth surface, it develops microcolony structures surrounded by EPS [11]. The development of caries is driven by these microcolonies, which concentrate organic acids near the tooth surface, initiating demineralization [12,13]. Streptococcus gordonii (S. gordonii) and Streptococcus sanguinis (S. sanguinis) are commonly found on caries-free tooth surfaces [14]. S. sanguinis and S. gordonii, prevalent inhabitants of the human oral cavity, are correlated with a decreased risk of dental caries and reduce caries risk by using an active arginine deiminase system to metabolize arginine [15]. Similarly, all three of these streptococcal strains are involved in the formation of dental plaque biofilm [16,17]. The biofilm model consisting of three species of streptococci is extensively utilized in caries studies [18,19]. S. sanguinis, S. mutans and S. gordonii have a relationship characterized by competition and antagonism, where an increase in the abundance of one species correlates with a decrease in the levels of the others [20]. During biofilm formation, S. sanguinis and S. gordonii compete with S. mutans for adherence to locations and nutrients, thus hindering S. mutans growth and preserving microbial equilibrium [21]. Thus, the intricate microecology and environment of plaque biofilm highlight an urgent need to find effective antibacterial agents. To manage dental caries ecologically, agents should selectively target cariogenic bacteria such as S. mutans, leaving the rest of the oral microbiome unaffected [22].

Recently, there has been growing interest in using natural compounds from plants to influence the initial phases of biofilm development, presenting a promising alternative approach [23]. Natural products, such as ursolic acid derived from berries, privet leaves, and paulownia leaves [24], curcumin derived from turmeric roots [25], and celastrol derived from the Tripterygium wilfordii plant [26], have significant anti-biofilm properties against multispecies biofilms. Berberine chloride hydrate (BH), obtained from the Chinese herb Coptis chinensis, has been utilized extensively within the traditional Chinese medical system for centuries [27]. Berberine has garnered significant global interest owing to its diverse molecular targets, safe clinical application, low toxicity at therapeutic doses, and its compatibility with numerous pharmaceutical drugs [28]. The chloride or sulfate salt of berberine is generally used for clinical purposes [29]. Berberine has been proven effective in both removing microbial biofilms and enhancing the effects of antibiotics [23]. In our earlier research [30], BH demonstrated effective anti-biofilm properties against S. mutans biofilm formation. However, to our knowledge, the antimicrobial and microecological effects of BH on multispecies biofilms of S. sanguinis, S. gordonii, and S. mutans have not been reported.

In this study, we created an in vitro model of a multispecies biofilm with S. sanguinis, S. mutans, and S. gordonii, examining the role of BH in altering the biofilm's composition and its cariogenic potential. Additionally, this study aimed to investigate the role of BH within an in vitro enamel demineralization model and to preliminarily elucidate the mechanisms underlying the modulation of multispecies biofilm formation mediated by BH.

Materials and methods

Bacterial strains, chemicals and compounds

Berberine chloride hydrate (BH) (99.82%) [31] was dissolved in distilled water to create a 1024  μg/mL solution and stored at −80 °C. BH was serially diluted two-fold to the concentrations of 512, 256, 128, 64 and 32  μg/mL. S. sanguinis (ATCC 10556), S. mutans UA159 (ATCC 700610), and S. gordonii (DL-1) were obtained from the lab. The bacteria were grown in brain heart infusion (BHI; Difco, Detroit, MI, USA) under anaerobic conditions at 37 °C.

Biofilm cultivation

S. sanguinis, S. gordonii, and S. mutans were grown anaerobically in BHI broth overnight and then diluted to 2 × 106 CFU/mL in 1% BHIS (BHI medium added with 1% sucrose) before the experiment.

For mono-species biofilm formation, bacteria were grown in 1% BHIS at a final concentration of 1 × 106 CFU/mL.

For multispecies biofilm formation, each species with 1:1:1 volume was mixed in 1%BHIS with or without BH to obtain a final concentration of 1 × 106 CFU/mL.

All the biofilm assays were performed under anaerobic conditions. Specifically, the culture plates were incubated inside an anaerobic workstation (Mart, MART AJ9023) continuously gassed with a mixture of 85% N₂, 10% CO₂ and 5% H₂. Bacteria cultured in broth without treatment served as the negative control. Chlorhexidine (CHX) served as the positive control for crystal violet staining.

Bacterial sensitivity analysis

Overnight bacterial cultures were standardized to 2 × 106 CFU/mL with BHI, then added with equal quantities of BH ranging from 512  μg/mL to 32 μg/mL, and incubated anaerobically at 37 °C for 24  h. The negative control consisted of their respective solvent with BHI broth. Subsequently, the OD 600 measurements were taken using a spectrophotometer (Tecan, Reading, Switzerland).

Biofilm susceptibility assays

The impact of BH on the development of single-species and multi-species biofilms was assessed using crystal violet staining. In short, biofilms were established as detailed above. After 24 h, the media was disposed out, and the dishes were rinsed with PBS. Then, methanol was added for 15 min, and the mixture was dried for 30 min. The biofilms underwent staining for 15 min with crystal violet (0.1%), followed by dissolving the dye in 95% ethanol. The absorbance was finally read at 595 nm using a spectrophotometer.

We further modified the 3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyl tetrazolium bromide (MTT) assay [31] to assess the mature biofilm metabolic activity. Biofilms were formed by anaerobically incubating bacterial cultures with 1% BHIS at 37 °C for 24 h. Following the removal of the media, BH was applied to the plates. Twenty-four  hours later, the supernatant of the plate was eliminated, and MTT solution (0.5  mg/mL) was added and incubated for 1 h at 37 °C under dark. After removing the supernatants, followed by the addition of 100% DMSO, the samples were then incubated under dark for 20 min. Finally, a measurement of the absorbance at 540 nm was taken.

Biofilm imaging

Multispecies biofilms were formed as described above, and their respective solvents with broth were used as the negative control.

For scanning electron microscope (SEM) analysis, the biofilm was cultivated for 24 h at 37 °C, then washed twice with PBS after removing the supernatant, followed by the fixation of the biofilm with 2.5% glutaraldehyde for 12 h. After that, a graded ethanol series was used to dry the biofilms. After applying gold sputtering, the coverslips were analyzed with an SEM (ZEISS, Oberkochen, Germany).

EPS staining involved the addition of 2.5  μM Alexa Fluor 647-labelled dextran when the biofilm was initiated. Following a 24-h period, the supernatant was extracted, and distilled water was used to clean the plates. Afterwards, the sample was stained with 2.5  μM SYTO9 green dye for 15  min in the dark.

For dead/live staining, following the formation of a 24 h-old biofilm, the medium was removed, and the wells were washed using distilled water. Subsequently, the dishes were then filled with an equal volume mixture of SYTO9 and propidium iodide (Invitrogen, USA) and left in darkness for 15 min.

For fluorescent in situ hybridization (FISH) staining [32], biofilms were initially exposed to 4% paraformaldehyde for 12 h. Subsequently, after drying at 46 °C, the biofilms were added with a lysozyme solution (30mg/mL) for 20  min at 37 °C. Next, biofilms underwent a stepwise dehydration process with 50%, 80% and 100% ethanol, followed by drying for 10 min at 46 °C. The biofilms were subsequently incubated in the dark for 90  min at 46 °C using a hybridization buffer with 2 nM of each designated probe (Table S1). Then, the warmed wash solution was used to wash the biofilm at 48 °C for 15  min.

An LSM 980 (Zeiss, Oberkochen, Germany) was employed to observe all the biofilm images listed above with a 20 × oil immersion lens. And the 3D structures of biofilms were quantitatively analyzed utilizing Image J COMSTAT software.

Quantitative evaluation of water-insoluble EPS

As described earlier, multispecies biofilms were established. After rinsing the pellet twice with PBS, it was centrifuged for 10  min at 4,000 × g, then dissolved in 0.1 M NaOH and kept at 37 °C for 2  h. The EPS precipitation was obtained by passing the supernatant through a 0.22 μm nitrocellulose membrane filter after centrifugation for 10 min. After incubating the mixture overnight with three volumes of pre-chilled 95% ethanol, the supernatant was subsequently combined with 5% phenol and concentrated sulfuric acid (H2SO4) at a volumetric ratio of 1:1:5. Next, the microplate reader was employed to determine the absorbance at 492 nm.

Determining lactic acid and pH values

Following 24 h of biofilm establishment, the biofilms were washed using PBS. Then, each well received 1.5  ml of buffered peptone water (BPW) with 0.2% sucrose, and the plate was subsequently incubated at 37 °C for 3 h with 5% CO2 to produce acid. A lactate assay kit (Jiancheng, Nanjing, China) was used to examine the supernatants, and the rate of absorption was measured at 530 nm.

A pH electrode (Mettler Toledo, Zurich, Switzerland) was used to measure the pH of the supernatant from multispecies biofilms at 3, 6, 12 and 24 h.

Transcriptome analysis

Biofilms were grown with or without BH, as previously described. The total RNA was extracted as previously described [30]. Enriched mRNA samples were used to produce cDNA libraries via the TruSeqTM RNA sample preparation kit (Illumina, San Diego, CA). A second-generation high-throughput sequencing platform was used to pool and sequence different libraries. For further analysis of gene expression patterns, genes with a fold change exceeding 2.0 and a P-value under 0.05 were selected.

Micro-CT scanning and analysis

Bovine enamel specimens were prepared as described above [31]. The incisor teeth from bovines were sectioned into 5 mm × 5 mm pieces with a 3 mm thickness using a hard tissue microtome (EXAKT 300CP, Germany). The silicon carbide sandpaper with grits of 600, 800, 1500 and 2000 was used to polish the enamel blocks.

The blocks were treated with sterile artificial saliva (Leagene, Beijing, China) for 2 h. The blocks were processed with 0.9% sterile saline before being transferred to fresh plates containing BH and BHI for a 24-h incubation period. This process was repeated daily for 7 days. After the biofilms were eliminated by sonication, the blocks were washed with PBS. The micro-CT (µCT 50, Scanco Medical AG, Switzerland) was employed to measure the mineral density and demineralization depth in five randomly selected 50 µm × 50 µm areas, using Mimics Research 20.0.

Statistical analysis

Every experiment was carried out separately three times. GraphPad Prism version 9.0 was used for data analysis. All the data were first assessed for normality using the Shapiro–Wilk test (P >  0.05 was considered to indicate a normal distribution). To assess significant differences across various samples, a one-way ANOVA and Tukey's post hoc test were applied, considering a P-value below 0.05 as statistically significant.

Results

Berberine chloride hydrate (BH) showed different antimicrobial effects against three streptococcal species

BH exhibited different bactericidal activity against S. sanguinis, S. mutans, and S. gordonii planktonic cells (P < 0.01, Fig S1). For S. mutans, the MIC of BH was 64  μg/mL. For S. sanguinis and S. gordonii, the minimum inhibitory concentration (MIC) of BH was 256  μg/mL and 128  μg/mL, respectively. Among the diverse strains, BH demonstrated lower MIC values and demonstrated greater efficacy against S. mutans.

BH showed good antimicrobial activity on multispecies streptococci biofilms

To visualize the influence of BH on multispecies streptococcal biofilm, crystal violet staining was conducted. As shown in Figure 1A (P < 0.05), BH exhibited different bactericidal activity against S. sanguinis, S. mutans, and S. gordonii biofilm. In the presence of 128  μg/mL, 256  μg/mL, 64  μg/mL, and 128  μg/mL BH, respectively, the biomass of S. sanguinis, S. gordonii, S. mutans, and their multi-species biofilms were significantly reduced. The effects of CHX on the multispecies streptococci biofilms are shown in Figure S2. Similarly, BH demonstrated greater efficacy in preventing S. mutans biofilm formation, with lower minimum biofilm inhibitory concentration (MBIC) values compared to the other two bacteria. Besides, we used the MTT assay to explore the impact of BH on established biofilms. As shown in Figure 1B (P < 0.05), the treatment with BH (256 μg/mL) began to decrease the metabolic activities markedly in pre-established biofilm among these three streptococcal species and multispecies streptococcal biofilms.

Figure 1.

Two-panel bar graph: biofilm formation and viability of S. mutans, S. A two-panel vertical bar graph shows the effect of increasing concentration on biofilm formation and viability for S. mutans, S. gordonii, S. sanguinis, and mixed.

BH suppresses multispecies streptococcal biofilms. (A) Effect of BH on S. mutans, S. sanguinis, S. gordonii biofilms, along with their cariogenic multispecies biofilms. (B) Effect of BH on S. mutans, S. sanguinis, S. gordonii mature biofilms, along with their mature multispecies biofilms. *P < 0.05, **P < 0.01, ***P < 0.001.

The SEM analysis consistently demonstrated that the treatment with BH (128  μg/mL) significantly decreased the total biomass of the multispecies biofilm (Figure 2A). The dead/live bacteria ratio (P < 0.05, Figure 2B and C) was elevated, and the thickness of the biofilm (P > 0.05, Figure 2B and D) was decreased after 128  μg/mL of BH was applied, as indicated by fluorescent staining. These findings were consistent with the biofilm development assay results.

Figure 2.

Four-panel figure: microscopy images showing biofilm structure and live/dead bacteria; bar graphs display quantitative data. Four-panel figure shows microscopy images and bar graphs of biofilm characteristics for control, 64ug/mL, and 128ug/mL conditions. Panel A: Nine SEM images.

The cariogenic characteristics of multispecies biofilms were inhibited by BH. (A) The representative SEM images of multispecies streptococcal biofilms. (B) The typical multispecies streptococcal biofilm CLSM pictures. (C) The proportion of dead to live bacteria in the biofilms. (D) The thickness of the biofilms. *P < 0.05, **P < 0.01, ***P < 0.001.

BH reduced the cariogenic characteristics of multispecies streptococcal biofilms

The synthesis of EPS and the production of lactic acid in multispecies biofilms were quantified to assess the impacts of BH on the cariogenic properties of these biofilms. To further explain the effects of BH on EPS production, the CLSM results revealed that, when provided with 64  μg/mL of BH and 128  μg/mL of BH, the EPS synthesis of the biofilm was suppressed compared to that of the control (P < 0.05, Figure 3A and B). Thus, the ratio between EPS and bacteria was reduced following treatment with BH at 64  μg/mL and 128  μg/mL (P < 0.001, Figure 3A and C). Consistently, the phenol/H2SO4 assay demonstrated that BH at a concentration of 128  μg/mL greatly decreased the water-insoluble EPS of multispecies biofilms (P < 0.001, Figure 3D). Additionally, at 128  μg/mL, BH also significantly lowered the production of lactic acid (P < 0.001, Figure 3E) and decreased the pH values (Figure 3F) relative to those of the control group.

Figure 3.

A six-panel figure shows microscopy images, bar graphs, and a line graph detailing BH effects on streptococcal biofilms. Six-panel figure shows BH effects on streptococcal biofilms. Panel A: Microscopy images (Bacteria, EPS, Merged, 3D views) at Control, 64ug.

The cariogenic characteristics of multispecies streptococcal biofilms were inhibited by BH. (A) The representative CLSM images of multispecies streptococcal biofilms. (B) Quantitative measurement of bacteria and EPS present in the biofilms. (C) The percentage of EPS compared to bacteria in the biofilms. (D) Quantitative measurement of water-insoluble EPS in biofilms. (E) Lactic acid production of multispecies biofilm. (F) pH values of the culture mediums in multispecies biofilm. *P < 0.05, **P < 0.01, ***P < 0.001.

BH altered the microbiota composition of the multispecies streptococcal biofilm

As shown in Figure 4, BH treatment caused a decrease in the biomass of S. sanguinis and S. gordonii, and S. mutans within multispecies biofilm (P < 0.05, Figure 4A and B). Furthermore, when compared to the control group, BH treatment at 128 μg/mL significantly reduced the relative abundance of S. mutans and S. sanguinis (Figure 4C). However, an increase in the relative abundance of S. gordonii was observed following treatment with 128 μg/ml of BH (Figure 4A and C), suggesting that BH selectively targets S. mutans and S. sanguinis within multispecies streptococcal biofilms.

Figure 4.

Three-panel figure: BH alters multispecies biofilm. Panel A: microscopy. Panel B: biomass bar. Three-panel figure shows BH effect on multispecies streptococcal biofilms. Panel A displays microscopy images (Control, 64, 128 µg/mL BH rows.

BH alters the microbiota composition of multispecies streptococcal biofilms. (A) FISH images representing multispecies biofilms. (B) Measurement of the levels of S. gordonii, S. mutans, and S. sanguinis in multispecies biofilms. (C) Assessment of the proportions of S. gordonii, S. mutans, and S. sanguinis in multispecies biofilms. *P < 0.05, **P < 0.01, ***P < 0.001.

Transcriptome analysis of the BH-treated multispecies streptococcal biofilm

The BH-treated group and the control group were clearly differentiated, according to principal component analysis (PCA) (Figure S3). The differentially expressed genes (DEGs) of S. gordonii, S. sanguinis, and S. mutans were identified in both the BH-treated group and the control group. In the BH-treated S. mutans strain, 371 genes were significantly downregulated, and 271 genes were upregulated compared to the controls. For S. sanguinis, 134 genes exhibited upregulated expression, and 54 genes were downregulated. Additionally, 302 genes had downregulated expression and 497 genes had increased expression for S. gordonii (Figure 5A, Table S2). To learn more about the biological effects of BH on multispecies streptococcal biofilms, we performed GO annotation enrichment of DEGs. As shown in Figure S4, the differential genes of the three bacteria were more consistently distributed in the three categories of biological processes (BP), cellular components (CC) and molecular functions (MF). Among them, the significantly changed genes were mainly involved in BP categories, such as cellular process and metabolic process. In the CC category, the genes of the cell and cell parts were significantly changed. In the MF category, the significantly changed genes were involved in the catalytic and binding processes.

Figure 5.

Six-panel graph: volcano plots, KEGG enrichment for S. mutans. A six-panel graph shows volcano plots and KEGG enrichment analyses for S. mutans, S. gordonii, and S. sanguinis. The left column (A.

Transcriptome analysis of the BH-treated multispecies streptococcal biofilms. (A) Volcano plot showing genes with differential expression. (B) KEGG enrichment analysis.

Based on the KEGG annotation analysis (Figure S5), the significantly altered genes were primarily engaged in metabolism pathways, especially carbohydrate metabolism, among the three strains. Further KEGG enrichment analysis (Figure 5B) showed that the ribosome was enriched for significantly changed genes among all of the three strains. In addition, carbon metabolism in S. mutans and aminoacyl-rRNA biosynthesis in S. sanguinis were also enriched with significantly changed genes.

BH attenuated the biofilm-induced demineralization of tooth enamel

The ability of oral biofilm to demineralize is linked to its potential to cause caries. Therefore, we developed a biofilm from saliva on bovine tooth enamel and utilized micro-CT to examine how BH influences the demineralization process facilitated by the biofilm. Then, we created multispecies streptococcal biofilm on bovine tooth enamel. We found that the lesion depth (P < 0.05, Figure 6A and B) was lower and the mineral densities in demineralized areas (P > 0.05, Figure 6A and C) were higher after BH treatment compared to the control group.

Figure 6.

Three-panel figure: micro-CT images & bar graphs. Panel B shows. The three-panel figure shows micro-CT images and bar graphs. Panel A displays two grayscale micro-CT images. The left image, labeled Control, shows a dark upper region and a lighter granular lower region. The right image, labeled BH treated, also shows a dark upper region and a lighter granular lower region, with the lighter region appearing visually thicker than in the Control image. Panel B is a bar graph showing lesion depth in micrometers on the vertical axis for Control and BH groups on the horizontal axis. The Control bar is taller, extending to approximately 185 micrometers, while the BH bar extends to approximately 125 micrometers. An asterisk above a line connecting the two bars indicates a significant difference. Panel C is a bar graph showing mean mineral density in hu on the vertical axis for Control and BH groups on the horizontal axis. The Control bar extends to approximately 6200 hu, and the BH bar extends to approximately 7200 hu.

BH prevents the multispecies streptococcal biofilm-induced demineralization of bovine tooth enamel. (A) Micro-CT images of bovine tooth enamel. (B) The measured depths of demineralization (n = 9). (C) The measured mineral densities (n = 9). *P < 0.05.

Discussion

Dental plaque biofilm is crucial for the initiation of dental caries. It is now understood that caries result from an imbalance in microecology, characterized by the development of multispecies biofilms with a predominance of pathogenic bacteria [33]. Recently, the ecological plaque theory has stated that microbial disequilibrium is more closely linked to dental caries [1,9]. Oral biofilms containing well-balanced oral cariogenic streptococci (e.g. S. mutans) and antibacterial compounds-producing (e.g. S. gordonii) are not cariogenic [14,34]. In caries studies, the multispecies biofilm model, which consists of pathogenic bacteria such as S. mutans and commensal bacteria such as S. sanguinis and S. gordonii, has been widely applied [7,32,35]. Consequently, the present study focused on assessing the impact of BH on a multispecies biofilm containing S. sanguinis, S. mutans and S. gordonii.

The present study indicates that BH exerts a better inhibitory effect on the planktonic growth and biofilm formation of S. mutans compared to S. sanguinis and S. gordonii. The inhibitory trends of BH were consistent with those of CHX, suggesting that BH has a stronger inhibitory effect on oral cariogenic bacteria than on oral commensal bacteria. Besides, BH at a concentration of 128 μg/mL, which exceeds the level needed to inhibit S. mutans formation, can significantly inhibit multispecies biofilm formation. This demonstrates that multispecies biofilms may be more resistant to BH than single-species biofilms. Moreover, our findings showed that BH inhibited the planktonic growth of S. gordonii without impeding its biofilm formation. We therefore hypothesize that the inhibitory effect of BH on biofilm formation in various bacterial species may not be directly linked to bacterial proliferative activity. Besides, we found that BH can also inhibit the metabolic activity of mature multispecies biofilms, but the influence of BH on biofilm eradication is weaker than its effect on inhibiting biofilm formation.

Oral biofilm formation involves multiple steps, including bacterial adherence, EPS generation, and biomass accumulation [36]. EPS can contribute to dental caries via enhancing microbial adhesion, producing a 3D framework that limits diffusion, supplying fermentable sugars, and establishing acidic conditions [37,38]. In our study, both the EPS and the EPS-to-bacteria ratio were significantly reduced in this study when BH was added, along with a disruption of biofilm structure, when compared to the control group. These results indicate that the bacteria would decrease EPS synthesis to survive when they were under tremendous stress.

Managing the balance among oral streptococci to promote beneficial bacteria while suppressing pathogenic bacteria could be an effective strategy for maintaining oral microecology and preventing cavities [26,39,40]. The shift in microflora composition will reflect their propensity to develop in relation to health conditions or caries risk [19,41]. The S. mutans that arises in multispecies biofilms usually indicates increased acidogenicity, which may lead to caries [42,43]. Dental health is typically connected with a higher abundance of commensal early colonizers, including S. sanguinis and S. gordonii [44,45]. In the current study, the composition of multispecies biofilms changed, with S. gordonii outcompeting S. sanguinis and S. mutans when BH (128 μg/mL) was provided. Lyu et al. [24] showed that ursolic acid, a natural compound found in various plants, decreased the proportion of S. mutans in mixed-species biofilms while significantly increasing the proportion of non-cariogenic bacteria, aligning with our findings. Nobbs et al. [34] revealed that S. gordonii exhibits a naturally higher competitiveness in interspecific antagonism concerning binding site occupation. Furthermore, S. gordonii exerts a weak inhibitory effect on the growth of S. sanguinis [46]. We hypothesize that the composition changes in multispecies biofilms might result from interactions between different species as well as the conditions imposed by antibacterial agents. When treated with BH, S. mutans was significantly inhibited, while S. gordonii acquired a relative competitive advantage over S. sanguinis and became dominant. Above all, we speculate that BH enhanced the peroxidase-producing capabilities of S. gordonii within multispecies biofilms, resulting in a microbial consortium with improved competitive advantages against the opportunistic proliferation of S. mutans, thereby contributing to caries management.

To further investigate the impact of BH on the gene expression levels of each strain in multispecies biofilms, the transcriptome analysis of a single strain within multispecies biofilms was performed, respectively, with or without BH treatment. We found that BH treatment led to an elevation in the downregulated genes of S. mutans and an increase in the upregulated genes of other commensal streptococci in mixed biofilms. These findings indicate that BH can significantly inhibit S. mutans gene expression in multispecies biofilms, further suggesting its good clinical application potential. Further analysis revealed that BH can interfere with carbohydrate metabolism and composition. Numerous oral bacteria exhibit saccharolytic properties and can efficiently absorb substantial quantities of glucose derived from the host's diet or other carbohydrates. Elevated glucose levels in the surrounding area alter the metabolic products of commensal species, leading to the production of more potent organic acids such as lactate [47]. Combined with our results, we found that the lactic acid production of mixed biofilms was decreased when treated with BH, which suggests that the decrease in lactic acid production within multispecies biofilms may be caused by affected carbohydrate metabolism via BH. The ribosome, a critical component of genetically programmed protein synthesis, serves as a key target for antibiotics. A diverse array of chemically distinct compounds inhibits bacterial proliferation by interfering with protein synthesis through targeting the ribosome [48]. Based on our results, BH may modulate ribosome function in multiple bacterial species within multispecies biofilms, highlighting the need for further studies to elucidate its effects on ribosome function and the underlying molecular mechanisms.

To assess the demineralizing activity of BH-treated biofilms, the mineral density in demineralized areas was measured. Micro-CT is widely recognized as the gold standard for in vitro caries validation because of its non-destructive, 3D imaging of lesion depth [49]. Following earlier research, a biofilm enamel model was utilized to examine how BH affects the cariogenic potential of biofilm [50]. Furthermore, because bovine teeth are readily available and have a similar structure to human teeth, enamel samples from cows were employed in this study [51]. Our results showed that the demineralizing activity at the biofilm/enamel interface was reduced in BH-treated multispecies biofilms.

Our study has certain limitations. Currently, the mechanisms by which BH inhibits multispecies biofilms have only been preliminarily investigated through transcriptomic sequencing. Further research is required to elucidate these mechanisms comprehensively. Furthermore, future in vivo experiments on BH could enhance its potential for clinical application.

Conclusions

In summary, this research revealed that BH prevented biofilm formation as well as EPS synthesis in multispecies biofilms composed of S. sanguinis, S. gordonii, and S. mutans, altered its microbial structure. The demineralizing activity at the biofilm/enamel interface was reduced in BH-treated multispecies biofilms. Above all, BH revealed great potential for the management of cariogenic biofilm, indicating its possible application in dental caries therapy.

Supplementary Material

Supplementary materialsF.docx

Funding Statement

This study was supported by the National Natural Science Foundation of China (No. 81970928).

Disclosure statement

No potential conflict of interest was reported by the author(s).

Data availability statement

All data generated or analyzed during this study are included in this article.

Ethics approval

Not applicable.

Supplementary material

Supplemental data for this article can be accessed at https://doi.org/10.1080/20002297.2026.2732737.

References

  • [1]. Samaranayake L, Matsubara VH. Normal oral flora and the oral ecosystem. Dent Clin North Am. 2017;61:199–215. doi: 10.1016/j.cden.2016.11.002 [DOI] [PubMed] [Google Scholar]
  • [2]. Bernabe E, Marcenes W, Hernandez CR, et al. Global, regional, and national levels and trends in burden of oral conditions from 1990 to 2017: a systematic analysis for the global burden of disease 2017 study. J Dent Res. 2020;99:362–373. doi: 10.1177/0022034520908533 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [3]. Marsh PD. Dental plaque as a microbial biofilm. Caries Res. 2004;38:204–211. doi: 10.1159/000077756 [DOI] [PubMed] [Google Scholar]
  • [4]. Davey ME, Costerton JW. Molecular genetics analyses of biofilm formation in oral isolates. Periodontol 2000. 2006;42:13–26. doi: 10.1111/j.1600-0757.2006.00052.x [DOI] [PubMed] [Google Scholar]
  • [5]. Kreth J, Zhang Y, Herzberg MC. Streptococcal antagonism in oral biofilms: streptococcus sanguinis and streptococcus gordonii interference with streptococcus mutans. J Bacteriol. 2008;190:4632–4640. doi: 10.1128/jb.00276-08 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [6]. Marsh PD. Microbiology of dental plaque biofilms and their role in oral health and caries. Dent Clin North Am. 2010;54:441–454. doi: 10.1016/j.cden.2010.03.002 [DOI] [PubMed] [Google Scholar]
  • [7]. Jiang W, Wang Y, Luo J, et al. Effects of antimicrobial peptide GH12 on the cariogenic properties and composition of a cariogenic multispecies biofilm. ApEnM. 2018;84. doi: 10.1128/aem.01423-18 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [8]. Jiang W, Wang Y, Luo J, et al. Antimicrobial peptide GH12 prevents dental caries by regulating dental plaque microbiota. ApEnM. 2020;86. doi: 10.1128/aem.00527-20 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [9]. Li LN, Guo LH, Lux R, et al. Targeted antimicrobial therapy against streptococcus mutans establishes protective non-cariogenic oral biofilms and reduces subsequent infection. Int J Oral Sci. 2010;2:66–73. doi: 10.4248/ijos10024 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [10]. Rickard AH, Gilbert P, High NJ, et al. Bacterial coaggregation: an integral process in the development of multi-species biofilms. TIM. 2003;11:94–100. doi: 10.1016/s0966-842x(02)00034-3 [DOI] [PubMed] [Google Scholar]
  • [11]. Xiao J, Klein MI, Falsetta ML, et al. The exopolysaccharide matrix modulates the interaction between 3D architecture and virulence of a mixed-species oral biofilm. PLoS Pathog. 2012;8:e1002623. doi: 10.1371/journal.ppat.1002623 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [12]. Kim D, Koo H. Spatial design of polymicrobial oral biofilm in its native disease state. J Dent Res. 2020;99:597–603. doi: 10.1177/0022034520909313 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [13]. Rose M, Wilson N, Williams E, et al. Growth with commensal streptococci alters streptococcus mutans behaviors. J Dent Res. 2023;102:450–458. doi: 10.1177/00220345221145906 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [14]. Ge Y, Caufield PW, Fisch GS, et al. Streptococcus mutans and streptococcus sanguinis colonization correlated with caries experience in children. Caries Res. 2008;42:444–448. doi: 10.1159/000159608 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [15]. Sakanaka A, Kuboniwa M, Takeuchi H, et al. Arginine-ornithine antiporter ArcD controls arginine metabolism and interspecies biofilm development of streptococcus gordonii. J Biol Chem. 2015;290:21185–21198. doi: 10.1074/jbc.M115.644401 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [16]. Bijle MN, Abdalla MM, Hung IFN, et al. The effect of synbiotic-fluoride therapy on multi-species biofilm. J Dent. 2023;133:104523. doi: 10.1016/j.jdent.2023.104523 [DOI] [PubMed] [Google Scholar]
  • [17]. Zhang J, Kuang X, Zhou Y, et al. Antimicrobial activities of a small molecule compound II-6s against oral streptococci. J Oral Microbiol. 2021;13:1909917. doi: 10.1080/20002297.2021.1909917 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [18]. Garcia SS, Blackledge MS, Michalek S, et al. Targeting of streptococcus mutans biofilms by a novel small molecule prevents dental caries and preserves the oral microbiome. J Dent Res. 2017;96:807–814. doi: 10.1177/0022034517698096 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [19]. Zhang K, Wang S, Zhou X, et al. Effect of antibacterial dental adhesive on multispecies biofilms formation. J Dent Res. 2015;94:622–629. doi: 10.1177/0022034515571416 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [20]. Kreth J, Merritt J, Shi W, et al. Competition and coexistence between streptococcus mutans and streptococcus sanguinis in the dental biofilm. J Bacteriol. 2005;187:7193–7203. doi: 10.1128/jb.187.21.7193-7203.2005 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [21]. Ye D, Liu Y, Li J, et al. Competitive dynamics and balance between streptococcus mutans and commensal streptococci in oral microecology. Crit Rev Microbiol. 2025;51:532–543. doi: 10.1080/1040841x.2024.2389386 [DOI] [PubMed] [Google Scholar]
  • [22]. Philip N, Suneja B, Walsh LJ. Ecological approaches to dental caries prevention: paradigm shift or shibboleth? Caries Res. 2018;52:153–165. doi: 10.1159/000484985 [DOI] [PubMed] [Google Scholar]
  • [23]. Duda-Madej A, Bazan H, Łabaz J, et al. Berberine interferes with the molecular landscape of biofilm-driven pathogenicity. Pathogens. 2026;15. doi: 10.3390/pathogens15020194 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [24]. Lyu X, Wang L, Shui Y, et al. Ursolic acid inhibits multi-species biofilms developed by streptococcus mutans, streptococcus sanguinis, and streptococcus gordonii. Arch Oral Biol. 2021;125:105107. doi: 10.1016/j.archoralbio.2021.105107 [DOI] [PubMed] [Google Scholar]
  • [25]. Li X, Yin L, Ramage G, et al. Assessing the impact of curcumin on dual-species biofilms formed by streptococcus mutans and candida albicans. Microbiologyopen. 2019;8:e937. doi: 10.1002/mbo3.937 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [26]. Li H, Niu C, Luo J, et al. Anticariogenic activity of celastrol and its enhancement of streptococcal antagonism in multispecies biofilm. Antibiotics (Basel, Switzerland). 2023;12. doi: 10.3390/antibiotics12081245 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [27]. Chen L, Bu Q, Xu H, et al. The effect of berberine hydrochloride on enterococcus faecalis biofilm formation and dispersion in vitro. Microbiol Res. 2016;186-187:44–51. doi: 10.1016/j.micres.2016.03.003 [DOI] [PubMed] [Google Scholar]
  • [28]. Zhou W, Asif A, Situ C, et al. Multiple target and regulatory pathways of berberine. Phytomedicine: international journal of phytotherapy and phytopharmacology. 2025;146:157030. doi: 10.1016/j.phymed.2025.157030 [DOI] [PubMed] [Google Scholar]
  • [29]. Kumar A, Ekavali, Chopra K, et al. Current knowledge and pharmacological profile of berberine: an update. Eur J Pharmacol. 2015;761:288–297. doi: 10.1016/j.ejphar.2015.05.068 [DOI] [PubMed] [Google Scholar]
  • [30]. Zhou Y, Liu Z, Wen J, et al. The inhibitory effect of berberine chloride hydrate on streptococcus mutans biofilm formation at different pH values. Microbiology spectrum. 2023;11:e0217023. doi: 10.1128/spectrum.02170-23 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [31]. Zhou Y, Huang F, Lin H. Berberine chloride hydrate impairs streptococcus mutans biofilm formation via inhibiting sortase A activity. NPJ Biofilms Microbiomes. 2025;11:120. doi: 10.1038/s41522-025-00756-0 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [32]. Lyu X, Li C, Zhang J, et al. A novel small molecule, LCG-N25, inhibits oral streptococcal biofilm. Front Microbiol. 2021;12:654692. doi: 10.3389/fmicb.2021.654692 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [33]. Takahashi N, Nyvad B. The role of bacteria in the caries process: ecological perspectives. J Dent Res. 2011;90:294–303. doi: 10.1177/0022034510379602 [DOI] [PubMed] [Google Scholar]
  • [34]. Nobbs AH, Zhang Y, Khammanivong A, et al. Streptococcus gordonii hsa environmentally constrains competitive binding by streptococcus sanguinis to saliva-coated hydroxyapatite. J Bacteriol. 2007;189:3106–3114. doi: 10.1128/jb.01535-06 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [35]. Zhang C, Kuang X, Zhou Y, et al. A novel small molecule, ZY354, inhibits dental caries-associated oral biofilms. Antimicrob Agents Chemother. 2019;63. doi: 10.1128/aac.02414-18 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [36]. Bowen WH, Koo H. Biology of streptococcus mutans-derived glucosyltransferases: role in extracellular matrix formation of cariogenic biofilms. Caries Res. 2011;45:69–86. doi: 10.1159/000324598 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [37]. Falsetta ML, Klein MI, Lemos JA, et al. Novel antibiofilm chemotherapy targets exopolysaccharide synthesis and stress tolerance in streptococcus mutans to modulate virulence expression in vivo. Antimicrob Agents Chemother. 2012;56:6201–6211. doi: 10.1128/aac.01381-12 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [38]. Lamont RJ, Koo H, Hajishengallis G. The oral microbiota: dynamic communities and host interactions. Nat Rev Microbiol. 2018;16:745–759. doi: 10.1038/s41579-018-0089-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [39]. Diaz PI, Valm AM. Microbial interactions in oral communities mediate emergent biofilm properties. J Dent Res. 2020;99:18–25. doi: 10.1177/0022034519880157 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [40]. Zhu J, Chu W, Luo J, et al. Dental materials for oral microbiota dysbiosis: an update. Front Cell Infect Microbiol. 2022;12:900918. doi: 10.3389/fcimb.2022.900918 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [41]. Wang S, Fang L, Zhou H, et al. Silica nanoparticles containing nano-silver and chlorhexidine respond to pH to suppress biofilm acids and modulate biofilms toward a non-cariogenic composition. Dent Mater. 2024;40:179–189. doi: 10.1016/j.dental.2023.11.006 [DOI] [PubMed] [Google Scholar]
  • [42]. Giacaman RA, Torres S, Gómez Y, et al. Correlation of streptococcus mutans and streptococcus sanguinis colonization and ex vivo hydrogen peroxide production in carious lesion-free and high caries adults. Arch Oral Biol. 2015;60:154–159. doi: 10.1016/j.archoralbio.2014.09.007 [DOI] [PubMed] [Google Scholar]
  • [43]. Xu X, Zhou XD, Wu CD. The tea catechin epigallocatechin gallate suppresses cariogenic virulence factors of streptococcus mutans. Antimicrob Agents Chemother. 2011;55:1229–1236. doi: 10.1128/aac.01016-10 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [44]. Rudin L, Kneubühler J, Dubey BN, et al. Inhibitory effect of plant flavonoid cyanidin on oral microbial biofilm. Microbiology spectrum. 2025;13:e0284824. doi: 10.1128/spectrum.02848-24 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [45]. Abranches J, Zeng L, Kajfasz JK, et al. Biology of oral streptococci. Microbiology spectrum. 2018;6. doi: 10.1128/microbiolspec.GPP3-0042-2018 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [46]. Zheng LY, Itzek A, Chen ZY, et al. Oxygen dependent pyruvate oxidase expression and production in streptococcus sanguinis. Int J Oral Sci. 2011;3:82–89. doi: 10.4248/ijos11030 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [47]. Robertsson C, Davies J, Svensäter G, et al. MUC5B modulation of early oral biofilm glucose metabolism. Front Oral Health. 2025;6:1516025. doi: 10.3389/froh.2025.1516025 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [48]. Jangra M, Travin DY, Aleksandrova EV, et al. A broad-spectrum lasso peptide antibiotic targeting the bacterial ribosome. Nature. 2025;640:1022–1030. doi: 10.1038/s41586-025-08723-7 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [49]. Heiden G, Pereira P, Yoshida ML, et al. Comparative evaluation of proximal caries detection methods using human, artificial intelligence, and micro-CT assessments. J Dent. 2026;173:106835. doi: 10.1016/j.jdent.2026.106835 [DOI] [PubMed] [Google Scholar]
  • [50]. Huang Y, Wang T, Chen Y, et al. Amyloid hexapeptide prevent dental caries by antibiofilm formation. J Dent. 2023;135:104596. doi: 10.1016/j.jdent.2023.104596 [DOI] [PubMed] [Google Scholar]
  • [51]. Wu R, Cui G, Cao Y, et al. Streptococcus mutans membrane vesicles enhance candida albicans pathogenicity and carbohydrate metabolism. Front Cell Infect Microbiol. 2022;12:940602. doi: 10.3389/fcimb.2022.940602 [DOI] [PMC free article] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Supplementary materialsF.docx

Data Availability Statement

All data generated or analyzed during this study are included in this article.


Articles from Journal of Oral Microbiology are provided here courtesy of Taylor & Francis

RESOURCES