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. 2026 Sep 15;14:1936029. doi: 10.3389/fchem.2026.1936029

QSPR analysis using stress sum based topological indices for predicting physicochemical properties of Hodgkin lymphoma drugs

A Sivaranjani 1, K Bharani Dharan 1, S Radha 1,*
PMCID: PMC13619894  PMID: 42812563

Abstract

Molecular graph theory has been widely used to represent the structure of chemical compounds and to study their physicochemical properties. In this work, we introduce a set of stress sum-based indices and examine their usefulness in describing the structural characteristics of drugs used in Hodgkin lymphoma treatment. Eight stress sum-based indices were calculated for thirteen selected drug molecules. Their relationships with seven physicochemical properties, namely boiling point, complexity, molecular weight, molar refraction, polar surface area, polarizability, and heavy atom count, were examined using Quantitative Structure–Property Relationship (QSPR) analysis. The correlation analysis of various indices supports the fact that the stress sum-based indices are efficient to capture the pertinent structural features of drug molecules and their application as molecular descriptors in QSPR studies. Additionally, these indices provide meaningful insights into the structural and physicochemical properties of drugs associated with Hodgkin lymphoma treatment. The findings of this study show promise for practical applications for drug design, structural optimization, and the repurposing of existing therapeutic compounds in the broader efforts of cancer pharmacology research.

Keywords: leave one out cross validation, linear regression, molecular graph, QSPR analysis, stress sum based topological indices

1. Introduction

Hodgkin lymphoma (HL) is a distinct B-cell malignancy with characteristic pathological, clinical, and therapeutic features. Although it is relatively rare, HL represents a significant proportion of lymphomas diagnosed worldwide (Ansell, 2015). Advances in diagnostic methods and risk-adapted treatment strategies have considerably improved the survival of patients with HL. Nevertheless, the disease continues to present clinical challenges, particularly in older patients and in cases of relapsed or refractory disease (Barrett and Collins, 2022; Bosch-Schips et al., 2022; Brice et al., 2021; Fylenko et al., 2025; Maco et al., 2022; Ullah et al., 2022; Wilson et al., 2023). Molecular approaches, including circulating tumor DNA (ctDNA), are increasingly being used for diagnosis, disease monitoring, and prediction of relapse (Maco et al., 2022). These developments emphasize the need for continued investigation of the molecular and physicochemical characteristics of therapeutic compounds used in HL.

The treatment of HL involves a combination of conventional chemotherapeutic agents and newer targeted drugs. Alkylating agents such as Carmustine (Wheeler et al., 1990), Cyclophosphamide (Wheeler et al., 1990), Dacarbazine (Lee et al., 2025), Lomustine (Proctor et al., 2010), Chlorambucil (Proctor et al., 2010), and Procarbazine (Geurts et al., 2023) have been used extensively in the treatment of HL. Other important therapeutic agents include the anthracycline Doxorubicin (Lee et al., 2025), the vinca alkaloid Vinblastine (Proctor et al., 2010), and the antibiotic Bleomycin (Proctor et al., 2010), which are components of the widely used ABVD regimen. Drugs such as Dexamethasone (Proctor et al., 2010), Etoposide (Wheeler et al., 1990), and Prednisone (Hall et al., 1967) are also used in different treatment settings. In addition, the introduction of targeted agents such as Pemigatinib (Hoy, 2020) reflects the increasing role of molecularly directed therapies. The structural diversity of these compounds provides a suitable setting for studying relationships between molecular structure and physicochemical properties using mathematical and computational approaches.

Molecular graph theory provides a convenient mathematical framework for representing chemical compounds as graphs, where atoms are represented by vertices and chemical bonds by edges. One important class of graph-theoretical descriptors used in chemical graph theory is the class of topological indices. These numerical descriptors transform structural information contained in a molecular graph into values that can be related to experimentally measured molecular properties. Classical degree-based and distance-based indices, including the Wiener, Randić, and atom–bond connectivity (ABC) indices, have been widely used for this purpose (Estrada et al., 1998; Randić, 2002; Wiener, 1947). Several other descriptors, such as the Zagreb indices (Gutman and Trinajstić, 1973), forgotten index (Furtula and Gutman, 2015), geometric–arithmetic index (Yuan et al., 2010), inverse sum indeg index (Pattabiraman, 2018), Shilpa–Shanmukha index (Zhao et al., 2021), and Sombor index (Gutman, 2021), have subsequently been introduced and investigated. Their successful application to different classes of pharmaceutical and chemical compounds demonstrates the usefulness of topological indices in relating molecular structure to physicochemical properties (Arockiaraj et al., 2025a; Arockiaraj et al., 2025b; Furtula and Gutman, 2015; Hayat et al., 2018; Kansal et al., 2023; Manickan and Desikan, 2024; Rao et al., 2024; Rauf et al., 2023a; Shanmukha et al., 2020; Shanmukha et al., 2022; Zaman et al., 2024; Zhong et al., 2021).

Among the structural descriptors developed from graph-theoretical concepts, stress-based measures provide information related to the occurrence of vertices and edges on shortest paths. The concept of stress centrality was introduced by Shimbel in 1953 (Shimbel, 1953), where the stress of a vertex is associated with the number of shortest paths passing through that vertex. More recently, stress-related descriptors have been studied in chemical graph theory, including the stress of vertices and the square root stress-sum index (Bhargava et al., 2023; Mahesh et al., 2021). Stress indices have also been evaluated for several graph families, such as complete bipartite graphs, paths, cycles, trees, windmill graphs, and wheels (Niveditha et al., 2025). These developments indicate that stress-based quantities can provide structural information that is different from that obtained solely from vertex degrees or distances.

Quantitative Structure–Property Relationship (QSPR) modeling provides a useful approach for investigating the relationship between molecular structure and measurable physicochemical properties. In QSPR studies, molecular descriptors such as topological indices are used as independent variables to develop mathematical relationships with selected molecular properties. Such models have been applied to a wide range of chemical and pharmaceutical compounds. Roy’s work on QSAR/QSPR modeling provides a theoretical basis for the use of molecular descriptors in drug discovery and related applications (Roy, 2017). In particular, graph-theoretical descriptors have been used in QSPR studies of antiepileptic drugs (Huilgol et al., 2022), COVID-19 drugs (Rauf et al., 2023b), biodegradable compounds (Lee and Min, 2022), alkanes (Chamua et al., 2024), and other pharmaceutical datasets (Hosamani et al., 2017). Similar studies have considered anticancer (Rao et al., 2024), antibacterial (Rao et al., 2024), lung cancer (Arockiaraj et al., 2025a), breast cancer (Rauf et al., 2023a; Shanmukha et al., 2022), skin cancer (Arockiaraj et al., 2025b), and blood cancer drugs (Zaman et al., 2024). These studies demonstrate that suitable graph-based descriptors can provide useful information about physicochemical properties and can therefore support the analysis of molecular structure in drug-related research.

Despite the extensive use of classical topological indices in QSPR studies, the application of stress-based analogues of degree-based indices to pharmaceutical compounds has received comparatively less attention. In the present work, we address this gap by defining eight stress sum-based topological indices, obtained by incorporating stress values into the framework of degree-based molecular descriptors. These indices combine information on shortest-path participation with structural information traditionally captured by degree-based descriptors. The proposed indices are calculated for thirteen drugs associated with HL, namely Carmustine, Cyclophosphamide, Dacarbazine, Lomustine, Chlorambucil, Procarbazine, Pemigatinib, Doxorubicin, Vinblastine, Bleomycin, Dexamethasone, Etoposide, and Prednisone. Their relationships with seven physicochemical properties, namely boiling point, complexity, molecular weight, molar refraction, polar surface area, polarizability, and heavy atom count, are examined using QSPR analysis. The obtained results are used to assess the effectiveness of the proposed stress sum-based indices as molecular descriptors for HL-related drug molecules and to explore their possible usefulness in drug design, optimization, and repurposing.

2. Materials and methods

Let G denote the hydrogen-suppressed molecular graph representation of a Hodgkin lymphoma drug, where V(G) represents the set of vertices (atoms) and E(G) represents the set of edges (chemical bonds) in the molecular structure. The order and size of the graph G are denoted by n and m respectively. For two vertices u,v∈V(G) , the edge joining them is denoted by uv . The stress of a vertex u , denoted by st(u) , is defined as the number of shortest paths that pass through u (Shimbel, 1953). The stress of a graph G , denoted by st(G) , is the sum of the stresses of all its vertices.

We define the edge partition of G with respect to stress defined as S={(st(vi),st(vj))∣vi,vj∈E(G)} and for each (a,b)∈S such that

In this paper, we focus on the Hodgkin lymphoma drugs such as Carmustine, Cyclophosphamide, Dacarbazine, Lomustine, Chlorambucil, Procarbazine, Pemigatinib, Doxorubicin, Vinblastine, Bleomycin, Dexamethasone, Etoposide, and Prednisone. The molecular structure of these graphs are depicted in Figure 1. To calculate the stress sum based indices of the graph Gi , we employed the stress-based edge partition of Gi . These partitions are denoted by Si , which represent the possible edge partitions corresponding to the graph Gi , and are listed below:

S1={(0,34),(0,10),(34,36),(34,24),(18,36),(18,24),(18,10),(36,10)}
S2={(0,21),(33,4),(33,39),(33,21),(32,39),(32,27),(1,4),(1,6),(6,39),(21,27)}
S3={(0,13),(0,58),(3,11),(11,19),(13,24),(19,58),(24,57),(57,58)}
S4={(0,14),(0,62),(3,12),(12,21),(14,56),(14,26),(21,57),(56,57),(56,26),(56,62)}
S5={(0,37),(0,79),(0,21),(37,51),(40,21),(40,57),(41,43),(41,75),(43,87),(75,57),(79,51),(79,87)}
S6=0,49,0,24,65,129,65,64,129,123,64,123,69,88,69,49,88,105,105,123,46,24,46,123
S7=0,194,0,132,0,75,0,119,0,41,0,240,0,251,65,205,65,57,194,6,194,119,194,251,132,110,132,250,6,19,135,85,135,240,135,57,75,85,75,55,205,250,205,190,82,240,82,55,19,190,119,41,110,251,240,250,251,190
S8=0,324,0,134,0,267,0,147,0,277,0,86,0,287,0,224,0,291,0,40,0,46,324,147,324,277,324,291,69,81,69,157,134,224,134,46,267,287,267,291,267,44,81,291,147,122,277,157,277,94,86,99,86,63,157,99,94,63,287,224,287,122,224,40,40,44
S9=0,280,0,223,0,37,0,52,3,47,518,272,518,280,518,496,267,91,267,301,333,337,333,442,272,291,337,27,337,301,83,27,83,45,83,442,21,151,151,223,151,52,280,304,91,47,223,496,480,291,480,304,480,442,291,56,37,304,45,56
S10=0,64,0,65,0,259,0,327,0,137,0,343,0,98,0,304,0,433,0,188,64,188,65,209,259,221,259,368,323,209,323,343,323,221,323,213,327,157,327,188,137,98,137,170,209,27,18,83,18,27,83,221,213,376,343,472,472,433,472,368,157,564,415,170,415,440,376,304,376,563,304,368,433,563,563,564,564,440
S11=0,129,0,264,0,62,0,70,0,119,0,356,128,145,128,23,128,123,2,23,2,70,387,709,387,70,387,370,129,233,1,21,1,23,264,163,264,356,137,479,137,123,268,233,268,631,145,496,21,123,23,370,155,203,155,109,163,115,675,690,675,356,675,251,690,759,62,233,709,479,709,631,203,251,119,109,119,115,479,496,759,496,759,370
S12=0,262,0,152,0,176,0,181,0,60,0,65,0,67,0,197,0,71,0,72,0,499,513,1233,513,475,1025,963,1025,225,1025,994,129,12,129,46,129,455,129,500,4,13,4,71,1,46,1,60,262,269,262,51,262,71,520,168,520,319,520,1233,267,421,267,181,12,48,13,75,269,475,141,167,141,168,141,71,152,475,152,225,421,455,421,499,167,319,167,75,168,225,168,255,48,994,176,60,176,499,51,123,60,455,319,117,65,455,67,197,963,1150,197,1233,70,117,70,123,72,255,455,500,1233,1150,475,994,475,104,475,499,994,500,104,123,1150,255
S13=0,1793,0,2339,0,334,0,2129,0,356,0,100,0,2417,0,115,0,391,0,2207,0,197,0,199,0,1737,0,715,0,208,0,211,0,2277,0,743,0,232,1793,1659,1793,2043,1,1,1,97,1539,1600,1539,1477,10,820,10,88,2059,2090,2059,2425,15,83,15,1205,1303,1360,1303,441,1303,715,2331,2339,2331,2417,2339,2277,291,568,291,384,291,197,294,199,294,1018,2090,419,2090,1722,820,880,820,743,564,475,564,743,54,1152,54,208,568,715,568,211,570,480,570,1018,1600,1659,334,1722,334,232,1360,1722,2129,2207,2129,2016,83,1477,88,1132,1630,356,1630,1160,1630,1737,97,385,356,208,100,379,1132,880,1132,1205,2417,3264,115,378,2425,385,2425,3264,378,419,378,232,279,441,379,211,1152,1160,1152,1018,384,475,391,199,391,480,2207,2277,1205,1245,3264,1771,197,2043,1477,1245,1737,1771,2016,2043

FIGURE 1.

Thirteen molecular structures are illustrated with purple atoms and bonds, each labeled G1 through G13, showing increasing size and complexity from simple chains and rings to larger fused aromatic systems and branching networks, arranged in three rows.

Structures of selected drugs used in Hodgkin lymphoma therapy.

Let stGi(Si) be an array in which each entry equals the number of edges uv having st(u)=a and st(v)=b for each (a,b)∈Si for Gi .

stG1S1=1,3,1,1,1,1,2,1stG2S2=4,1,1,1,1,1,1,1,1,1stG3S3=2,1,2,2,2,2,2,1stG4S4=2,1,2,2,1,1,2,1,1,2stG5S5=2,1,1,1,1,1,2,2,2,1,1,1stG6S6=2,2,2,2,1,2,1,1,1,1,2,2stG7S7=1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1stG8S8=1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1stG9S9=1,2,1,2,2,1,1,1,2,1,1,1,1,1,1,1,1,1,2,2,2,1,2,2,1,1,1,1,1,1,1stG10S10=1,1,1,1,2,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,2,2,1,1,1,1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,1stG11S11=1,1,2,1,1,1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,2,2,1,1,1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,1,1,1stG12S12=1,1,1,2,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1stG13S13=1,1,1,1,1,1,1,1,1,1,6,4,1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1

2.1. Detailed computation for Carmustine

To illustrate the computation of the proposed stress sum-based topological indices, we consider the molecular graph G1 of Carmustine. The stress value st(v) of each vertex v∈V(G1) is determined by counting the number of shortest paths passing through v . For each edge uv∈E(G1) , the pair (st(u),st(v)) is then considered. The distinct stress pairs corresponding to the edges of G1 form the stress-based edge partition S1 .

For the molecular graph of Carmustine, the stress-based edge partition is given by

S1=0,34,0,10,34,36,34,24,18,36,18,24,18,10,36,10.

The corresponding number of edges associated with each stress pair in S1 is given by

stG1S1=1,3,1,1,1,1,2,1.

Thus, the pair (0, 34) occurs once, (0, 10) occurs three times, (34, 36), (34, 24), (18, 36), (18, 24), and (36, 10) each occur once, while (18, 10) occurs twice.

The stress-based edge partition of G1 and its corresponding multiplicities are summarized in Table 1.

TABLE 1.

Stress-based edge partition of the molecular graph of Carmustine.

i Stress pair (a,b) stG1(a,b)
1 (0, 34) 1
2 (0, 10) 3
3 (34, 36) 1
4 (34, 24) 1
5 (18, 36) 1
6 (18, 24) 1
7 (18, 10) 2
8 (36, 10) 1

Using the above stress-based edge partition and its multiplicities, the eight proposed indices for G1 can be calculated as follows.

2.1.1. Stress-based Geometric–Arithmetic index

The stress-based Geometric–Arithmetic index is given by

GAstG1=120340+34+320100+10+12343634+36+12342434+24+12183618+36+12182418+24+22181018+10+12361036+10=6.6587404177≈6.659.

2.1.2. Stress-based First Zagreb index

The stress-based First Zagreb index is calculated as

M1stG1=10+34+30+10+134+36+134+24+118+36+118+24+218+10+136+10=34+30+70+58+54+42+56+46=390.

2.1.3. Stress-based Second Zagreb index

Similarly, the stress-based Second Zagreb index is

M2stG1=10⋅34+30⋅10+134⋅36+134⋅24+118⋅36+118⋅24+218⋅10+136⋅10=0+0+1224+816+648+432+360+360=3840.

2.1.4. Stress-based Forgotten index

The stress-based Forgotten index is given by

FstG1=102+342+302+102+1342+362+1342+242+1182+362+1182+242+2182+102+1362+102=1156+300+2452+1732+1620+900+848+1396=10404.

2.1.5. Stress-based Inverse Sum index

The stress-based Inverse Sum index is calculated as

ISstG1=10⋅340+34+30⋅100+10+134⋅3634+36+134⋅2434+24+118⋅3618+36+118⋅2418+24+218⋅1018+10+136⋅1036+10=74.5236239023≈74.524.

2.1.6. Stress-based Shilpa–Shanmukha index

The stress-based Shilpa–Shanmukha index is

SSstG1=10⋅340+34+30⋅100+10+134⋅3634+36+134⋅2434+24+118⋅3618+36+118⋅2418+24+218⋅1018+10+136⋅1036+10=22.4721307557≈22.472.

2.1.7. Stress-based Sombor index

The stress-based Sombor index is calculated as

SOstG1=102+342+302+102+1342+362+1342+242+1182+362+1182+242+2182+102+1362+102=303.9298052494≈303.930.

2.1.8. Stress-based Reverse Randić index

Finally, the stress-based Reverse Randić index is

RRstG1=10⋅34+30⋅10+134⋅36+134⋅24+118⋅36+118⋅24+218⋅10+136⋅10=155.5983605878≈155.598.

Therefore, the eight stress sum-based topological indices obtained for the molecular graph G1 of Carmustine are

GAstG1=6.659,M1stG1=390,M2stG1=3840,FstG1=10404,ISstG1=74.524,SSstG1=22.472,SOstG1=303.930,RRstG1=155.598.

These values agree with the corresponding entries reported in Table 2. The same procedure is followed for the remaining twelve Hodgkin lymphoma drug molecular graphs.

TABLE 2.

Stress sum based topological indices.

Drug Molecular graph GA M1 M2 F IS SS SO RR
Carmustine G1 6.659 390 3840 10404 74.524 22.472 303.930 155.598
Dacarbazine G2 7.756 482 5035 14088 85.167 25.256 383.632 181.968
Cyclophosphamide G3 10.029 677 9354 28129 126.661 35.304 532.381 273.593
Lomustine G4 10.980 883 15710 41453 175.916 43.201 680.596 372.526
Procarbazine G5 11.682 1508 37342 92314 316.048 61.071 1141.441 649.142
Chlorambucil G6 14.436 2592 101833 239012 568.446 90.950 1934.476 1178.279
Prednisone G7 19.997 7098 457857 1298380 1330.003 161.953 5562.068 2805.385
Dexamethasone G8 20.591 9608 706787 2206238 1669.925 184.534 7682.120 3521.563
Pemigatinib G9 28.710 15688 2095970 5216366 3209.783 296.828 11990.788 6840.734
Doxorubicin G10 30.306 20352 2989350 7255616 4201.802 349.583 15480.308 8679.096
Etoposide G11 34.942 23879 4562521 10897985 5097.394 406.273 17994.597 10722.752
Vinbastine G12 47.929 40959 10094837 27117891 8070.513 594.289 31708.853 17542.919
Bleomycin G13 65.179 171187 113768961 289100329 34048.948 1402.078 131634.261 70811.807

3. QSPR analysis

Quantitative structure–property relationship modeling is a key tool in drug discovery, linking molecular structure to physicochemical behavior. We analyzed thirteen drug-like molecules relevant to Hodgkin lymphoma, considering properties such as boiling point (BP), complexity (C), heavy atom count (HAC), molecular weight (MW), molar refractivity (MR), polarizability (P), and polar surface area (PSA). These properties influence absorption, distribution, metabolism, and overall pharmacokinetics.

Data were obtained from ChemSpider and PubChem, and are summarized in Table 3. Molecular structures were visualized using Chemcraft (Figure 1), and statistical analyses were performed with SageMath 9.3.

TABLE 3.

Physicochemical properties of HL-related drugs.

Drug Physicochemical properties
Boiling point
( ° C)
Complexity Heavy atom count Molar refraction
( cm3 /mol)
Molecular weight
(g/mol)
Polar surface area Polarizability
Carmustine 309.6 156 12 46.6 214.05 65 18.5
Dacarbazine 456.3 215 13 46.2 182.18 100 18.3
Cyclophosphamide 336.1 212 14 58.1 261.08 51 23
Lomustine - 219 15 57.8 233.69 62 22.9
Procarbazine 384.6 210 16 65.8 221.3 53 26.1
Chlorambucil 460 250 19 79.9 304.2 41 31.7
Prednisone 573.7 764 26 94.1 358.4 92 37.3
Dexamethasone 568.2 805 28 100.2 395.2 95 39.7
Pemigatinib - 731 35 125.1 487.5 83 49.6
Doxorubicin - 977 39 - 543.5 - -
Etoposide 798.1 969 42 140.1 588.6 161 55.5
Vinblastine - 1700 59 220.7 811 154 87.5
Bleomycin - 2580 96 - 1415.6 684 -

Linear regression was used to model the relationship between topological indices and physicochemical properties:

Q=αT+β

where Q is the property, T the topological index, α the slope, and β the intercept. Correlation heat map is shown in Figure 2, R2 values are given in Table 2, and QSPR models with corresponding R2 , RMSE, and significance values are listed in Table 4. The coefficient of determination (r2) measures how well the model explains variance, with higher values indicating stronger predictive power. The adjusted r2 refines this by accounting for the number of predictors, ensuring model accuracy. The root mean square error (RMSE) indicates the average magnitude of prediction errors, with lower values representing better model fit, while the F-value determines overall model significance. Table 5 displays the best fit with statistical parameters such as r2 , RMSE, F-stat and p-value. This framework quantifies how molecular structure, represented by topological indices, influences key physicochemical characteristics.

FIGURE 2.

Heatmap showing the correlation coefficients between physicochemical properties and topological indices, with values ranging from approximately 0.82 to nearly 1.00 as indicated by the adjacent color scale bar. Rows represent Boiling Point, Complexity, Heavy Atom Count, Molar Refraction, Molecular Weight, Polar Surface Area, and Polarizability; columns display indices GA, M1, M2, F, IS, SS, SO, and RR. Most correlations are above 0.88, with highest values for Molar Refraction, Polarizability, and Polar Surface Area versus several indices, illustrating strong relationships.

Correlation heatmap between physicochemical properties and topological indices of Hodgkin lymphoma drugs.

TABLE 4.

R2 value for stress sum based topological indices.

Topological indices BP C HAC MR MW PSA P
GA 0.9113 0.9624 0.9770 0.9808 0.9525 0.6926 0.9806
M1 0.8879 0.8183 0.8702 0.9723 0.9085 0.9811 0.9722
M2 0.7520 0.6722 0.7309 0.9018 0.7844 0.9768 0.9018
F 0.7779 0.6751 0.7330 0.8987 0.7863 0.9767 0.8987
IS 0.8675 0.8176 0.8721 0.9627 0.9103 0.9814 0.9625
SS 0.9093 0.9363 0.9773 0.9767 0.9900 0.9097 0.9765
SO 0.8921 0.8190 0.8701 0.9741 0.9084 0.9808 0.9740
RR 0.8678 0.8238 0.8775 0.9643 0.9148 0.9794 0.9642

R2 value for stress sum based topological indices (maximum value of R2 for each of the physicochemical properties is highlighted).

TABLE 5.

Best fit linear regression models for physicochemical properties of drug structures.

Properties Regression equation N adj (r2) r2 RMSE F p
BP BP=16.309(GAst)+228.77 8 0.8965 0.9113 51.20 61.62 0.00
C C=40.128(GAst)−201.49 13 0.9590 0.9624 144.52 281.36 0.00
HAC HAC=0.0621(SSst)+14.301 13 0.9753 0.9773 3.75 474.62 0.00
MR MR=3.9872(GAst)+16.59 11 0.9787 0.9808 7.63 459.60 0.00
MW MW=0.8895(SSst)+211.42 13 0.9891 0.9900 35.42 1091.61 0.00
PSA PSA=0.0182(ISst)+53.705 12 0.9795 0.9814 25.27 526.67 0.00
P P=1.5805(GAst)+6.5763 11 0.9785 0.9806 3.04 455.30 0.00

3.1. Linear regression models

To examine the relationship between the proposed stress sum-based topological indices and the selected physicochemical properties, simple linear regression models were developed for each pair of topological index and physicochemical property. In total, 56 linear regression models were obtained by considering eight topological indices and seven physicochemical properties. The corresponding regression equations are presented below.

For the stress-based Geometric–Arithmetic index GAst , the regression equations are given by

BP=16.309390GAst+228.767694,C=40.127934GAst−201.489579,HAC=1.352545GAst−0.323112,MR=3.987249GAst+16.589607,MW=19.011349GAst+10.621707,PSA=8.114869GAst−51.845681,P=1.580463GAst+6.576320.

For the stress-based First Zagreb index M1st , the corresponding regression equations are

BP=0.018589M1st+378.393491,C=0.013955M1st+435.924658,HAC=0.000481M1st+20.910306,MR=0.003989M1st+56.423059,MW=0.007002M1st+303.730954,PSA=0.003620M1st+53.806718,P=0.001581M1st+22.365105.

For the stress-based Second Zagreb index M2st , the regression equations are

BP=0.000088M2st+421.087219,C=0.000019M2st+558.462887,HAC=0.000001M2st+25.062502,MR=0.000016M2st+67.994703,MW=0.000010M2st+362.756101,PSA=0.000005M2st+77.785014,P=0.000006M2st+26.951363.

For the stress-based Forgotten index Fst , the regression equations are

BP=0.000037Fst+416.514363,C=0.000007Fst+557.594877,HAC=0.000000Fst+25.037093,MR=0.000006Fst+68.408316,MW=0.000004Fst+362.401097,PSA=0.000002Fst+77.574977,P=0.000002Fst+27.115101.

For the stress-based Inverse Sum index ISst , the regression equations are

BP=0.087134ISst+384.878567,C=0.070103ISst+434.898639,HAC=0.002422ISst+20.858075,MR=0.019747ISst+56.849705,MW=0.035225ISst+302.990612,PSA=0.018194ISst+53.705174,P=0.007828ISst+22.534379.

For the stress-based Shilpa–Shanmukha index SSst , the regression equations are

BP=1.170018SSst+341.355315,C=1.816525SSst+239.574430,HAC=0.062086SSst+14.300829,MR=0.277237SSst+45.610490,MW=0.889512SSst+211.416905,PSA=0.424729SSst+19.092744,P=0.109892SSst+18.079408.

For the stress-based Sombor index SOst , the regression equations are

BP=0.024593SOst+376.586819,C=0.018157SOst+435.841017,HAC=0.000626SOst+20.913138,MR=0.005188SOst+56.365048,MW=0.009106SOst+303.775105,PSA=0.004707SOst+53.768800,P=0.002056SOst+22.342055.

Finally, for the stress-based Reverse Randić index RRst , the regression equations are

BP=0.041410RRst+384.948981,C=0.033797RRst+431.236008,HAC=0.001167RRst+20.739651,MR=0.009159RRst+57.215293,MW=0.016961RRst+301.356656,PSA=0.008730RRst+53.047965,P=0.003630RRst+22.679166.

4. Results and discussion

The calculation of stress sum-based indices provides a useful means of interpreting the physicochemical behavior of drug molecules. In this work, strong linear relationships were observed between specific indices and selected molecular properties. The geometric–arithmetic index (GAst) showed high predictive ability for boiling point, complexity, molar refraction, and polarizability, reflecting its ability to describe overall molecular features. Similarly, the Shilpa–Shanmukha index (SSst) showed strong correlations with molecular weight and heavy atom count, highlighting its effectiveness in capturing additive atomic contributions. The inverse sum indeg index (ISst) was closely associated with polar surface area, indicating its sensitivity to molecular structural and surface characteristics. The corresponding best-fit linear regression equations and their statistical parameters are presented in Table 5. As shown in Table 5, the selected models exhibit high r2 and adjusted r2 values together with low RMSE values, indicating strong linear relationships between the selected topological indices and physicochemical properties. The corresponding scatter plots are presented in Figure 3, which illustrate the linear mapping between the selected stress sum-based topological indices and their respective physicochemical properties.

FIGURE 3.

Seven scatter plots display strong positive linear relationships between different chemical properties, each with blue points and a red trend line. Plots include GA versus boiling point, GA versus complexity, SS versus heavy atom count, GA versus molar refraction, SS versus molecular weight, IS versus polar surface area, and GA versus polarizability. Each plot is labeled accordingly, highlighting clear correlations between the variables.

Scatter plots comparing the models of physicochemical properties and topological indices.

5. Validation

To evaluate the robustness and predictive reliability of the developed models, validation was performed using leave-one-out cross-validation (LOO-CV). The LOO-CV approach is particularly suitable for relatively small datasets, as each observation is systematically excluded once from the training process and subsequently predicted using a model constructed from the remaining observations. This procedure provides an effective assessment of the model’s stability and its ability to generalize to unseen data.

5.1. Leave-one-out cross-validation

The predictive performance of the developed models was assessed using the leave-one-out cross-validation coefficient (QLOO2) . In this method, one compound is removed from the dataset at a time, the model is rebuilt using the remaining (n−1) compounds, and the excluded compound is then predicted. This process is repeated for all compounds in the dataset.

A higher QLOO2 value indicates superior internal predictive capability and demonstrates the robustness and reliability of the model. In addition to QLOO2 , the root mean square error of cross-validation (RMSECV) and mean absolute error (MAE) were also calculated to further evaluate prediction accuracy.

The mathematical expression for the leave-one-out cross-validation coefficient is given as:

QLOO2=1−∑j=1nyjact−yjpred,LOO2∑j=1nyjact−y¯act2

where yjact represents the experimental value of the jth compound, yjpred,LOO denotes the predicted value obtained when the compound is excluded from the training set, and y¯act is the mean of the experimental values. The leave-one-out cross-validation analysis was performed using a Python script developed for this study. The script was used to generate the LOO predictions and calculate QLOO2 , RMSECV, and MAE for each model. The obtained values were checked to ensure the consistency of the reported results. For transparency and reproducibility, the Python code used for the analysis is publicly available in the authors’ GitHub repository: https://github.com/BharaniDharanKumaravel/Code-for-Graph-problems/blob/df8e97ba147b820294ca6c78bcab13450aa134a8/QSPR_analysis_Leave%20One%20Out%20Cross%20Validation.

The calculated values of QLOO2 , RMSECV, and MAE are presented in Table 6. Higher QLOO2 values together with lower RMSECV and MAE values generally indicate better predictive performance and model reliability. As observed from Table 6, the QLOO2 values range from 0.8558 to 0.9553, indicating a satisfactory predictive performance across the considered physicochemical properties. Among the properties, molecular weight exhibits the highest QLOO2 value of 0.9553, whereas boiling point shows the lowest value of 0.8558. The corresponding RMSECV and MAE values further provide an assessment of the prediction errors associated with each model.

TABLE 6.

 Statistical parameters QLOO2 , RMSECV, and MAE obtained from leave-one-out cross-validation.

Properties QLOO2 RMSECV MAE
BP 0.8558 56.5285 38.9673
C 0.9372 171.7356 137.1100
MR 0.9453 11.6520 7.4714
P 0.9447 4.6439 2.9773
HAC 0.8749 8.1109 4.9305
MW 0.9553 69.0112 42.6982
PSA 0.8850 57.3093 34.0628

6. Conclusion

This study examined the usefulness of stress sum–based topological indices as molecular descriptors for predicting the physicochemical properties of drugs used for the treatment of Hodgkin lymphoma disease. The linear regression results showed that several of the proposed indices have strong relationships with the selected properties, indicating that stress-based information can provide useful structural information for QSPR analysis. The leave-one-out cross-validation results also showed reasonable predictive performance for several of the developed models, supporting the applicability of the proposed descriptors.

However, some limitations should be noted. In particular, there is currently no standard and widely adopted computational procedure specifically designed for calculating the stress of a vertex in molecular graphs. The calculation of stress values can therefore become computationally demanding as the size and complexity of the molecular graph increase. In addition, the present analysis is based on a relatively small set of thirteen drug molecules, and the regression models are restricted to seven physicochemical properties. Thus, the results should be interpreted within the scope of the molecular dataset considered.

Future work could involve the creation of efficient algorithms for calculating vertex stress in larger molecular graphs and the expansion of the proposed indices to a more diverse set of chemical data. Moreover, a more comprehensive assessment of their predictive ability can be carried out by testing these descriptors on independent data sets and comparing them with other popular molecular descriptors. To summarize, the present work is an application of stress sum-based topological indices in QSPR modeling and their potential for future work in chemical graph theory and molecular property prediction.

Funding Statement

The author(s) declared that financial support was received for this work and/or its publication. The article publication charges was covered by Vellore Institute of Technology, Chennai, India.

Footnotes

Edited by: Renjith Thomas, Mahatma Gandhi University, India

Reviewed by: Nadeem Ul Hassan Awan, Ghazi University, Pakistan

Imran, Government College University, Pakistan

Data availability statement

The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding author.

Author contributions

AS: Conceptualization, Data curation, Methodology, Visualization, Writing – original draft. KB: Conceptualization, Methodology, Visualization, Writing – original draft. SR: Investigation, Supervision, Validation, Writing – review and editing.

Conflict of interest

The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

The author(s) declared that generative AI was not used in the creation of this manuscript.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding author.


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