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. 2026 Oct 1;21(10):e0351518. doi: 10.1371/journal.pone.0351518

Generalism vs. specialization: Does niche breadth influence species responses to anthropogenic land-use change in Neotropical leaf-cutter ants?

Diego Garcia Castillo 1,*
Editor: Nickson Erick Otieno2
PMCID: PMC13630260  PMID: 42821535

Abstract

Land-use change, such as the transformation of woody ecosystems into open pastures, acts as a strong ecological filter, favouring some species while excluding others according to differences in ecological niche breadth. Understanding how differences in niche breadth influence species responses under anthropogenic filters is crucial to anticipate their persistence or displacement. In this study, we quantified realized niche breadth in two sympatric ecosystem engineers, the Neotropical leaf-cutter ants Atta cephalotes and Atta laevigata, to test whether breadth differences are consistent with specialist and generalist ecological strategies. We characterized realized niche breadth across fine-scale environmental gradients by integrating hemispherical photography, microclimatic data, mound architecture, and edaphic profiles from 114 colonies across a regional transect in the Colombian Andes, alongside macroclimatic data from Copernicus. Principal Component Analysis (PCA) and PERMANOVA identified canopy openness and bushes- and tree-type vegetation density as the principal axes of interspecific niche partitioning. The observed differences in realized niche breadth were consistent with specialist and generalist ecological strategies. A. laevigata was predominantly associated with open-canopy areas, warmer micro- and macroclimatic conditions, and narrower edaphic dispersion. In contrast, A. cephalotes occupied a wider range of microhabitat conditions. This broader realized niche breadth is compatible with previous reports of A. cephalotes occurring in urban areas. Together, these findings suggest that niche breadth may influence how Neotropical leaf-cutter ants respond to habitat transformation, helping to understand the ecological consequences of land-use change.

Introduction

Land-use change in the Anthropocene acts as a strong thermal and structural filter for biodiversity, particularly across transitions between natural and human-modified habitats [1,2]. Rapid environmental change has been triggered by the increasing demand for agricultural production that accelerates the conversion of complex woody habitats into croplands, pastures, and other simplified environments [3–5]. As a consequence, species may undergo local extirpation, respond through phenotypic plasticity or heritable genetic changes, or shift their distributions into novel or previously restricted habitats [6–8]. Understanding the mechanisms behind these disparate outcomes is of critical ecological interest; specifically, why certain taxa successfully expand into anthropogenic mosaics while others decline or become locally extinct [8–10].

Identifying the ecological mechanisms that determine which species persist in anthropogenic mosaics remains a critical challenge. Niche research has traditionally focused on its position, understood as the environmental optima or “average” preferences of a species, to predict response to habitat modification [11,12]. However, niche position alone often fails to account for the complexity of human-disturbed landscapes. Urbanized and agricultural landscapes often combine environmental conditions (e.g., temperature, vegetation structure, soil characteristics, and resource availability) in ways that species may not have previously experienced [13]. In contrast to the relative stability of natural environments, human-modified landscapes are often highly fragmented, constantly fluctuating, and perturbed [14,15]. Recent studies increasingly recognize niche breadth as an important determinant of species persistence under environmental change because it defines the range of abiotic conditions and biotic resources that species can tolerate and exploit [16–21]. Broader niche breadth is generally associated with greater ecological generalism, whereas a narrower niche breadth is associated with greater ecological specialization [19,22]. Consequently, species with relatively narrow niche breadths are expected to be more vulnerable to the environmental filtering associated with land use change [9,18]. On the other hand, broader niche breadth may facilitate species persistence by enabling more tolerance across novel combinations of environmental conditions [18,19].

The greater persistence of species with broader realized niche breadths in human-modified landscapes has been documented across a wide range of taxa [9,18,19]. For instance, avian generalists are more likely to maintain stable populations in urban centres than specialists [23–25]. Similar patterns have been observed in rodents, bats, reptiles, amphibians, and insects, where a positive relationship exists between niche breadth and occupancy in landscapes altered by humans [26,27]. Recent work on butterflies further supports this pattern, showing that species with broader environmental niches are more likely to persist across agricultural landscapes than habitat specialists [28]. However, many previous studies infer niche breadth from species’ presence–absence records or broad habitat categories, providing limited insight into how fine-scale environmental gradients shape realized niche breadth and species persistence [19,28,29]. Consequently, whether differences in realized niche breadth measured across fine-scale environmental gradients explain the contrasting persistence of ecosystem engineers in human-modified landscapes remains largely unknown. Ecosystem engineers are taxa that physically modify their environment [30,31]. Understanding how they respond to novel environmental conditions arising from rapid land-use change is therefore critical, as their persistence or exclusion can have cascading effects on soil structure, nutrient cycling, and ecosystem functioning [32,33].

The Neotropical leaf-cutting ants Atta cephalotes and Atta laevigata (Figs 1A and 1B) provide an ideal system to investigate these dynamics. These closely related ecosystem engineers occur sympatrically across much of northern South America [34–36]. Atta colonies excavate large subterranean nests that alter soil structure and influence local microclimatic conditions [32,37]. At broader spatial scales, Atta species are generally considered generalists because they forage on a wide variety of plant species and occupy broad geographic ranges [38,39]. However, field studies suggest they may diverge in their resilience to disturbance; for instance, while both species have been documented persisting within heavily degraded matrices [40,41], A. cephalotes has been more frequently observed in urban centres [42,43]. Because these two species coexist sympatrically, contrasting patterns of persistence are less likely explained by broad macro-climatic variation or dispersal limitations. Instead, this system provides an opportunity to test whether differences in realized niche breadth measured across fine-scale environmental gradients are associated with contrasting responses to land-use change. We therefore hypothesize that A. cephalotes occupies a broader realized niche than A. laevigata across fine-scale abiotic and structural gradients.

Fig 1. Sampling design and microhabitat characterization of Atta colonies in Santander, Colombia.

Fig 1

(A) Morphological detail of an A. cephalotes soldier. (B) Morphological detail of an A. laevigata soldier. Both depicted individuals were collected from colonies situated in the “La Siberia” location (geographic coordinates in S1 Table; each small square = 1 mm). (C) Topographic distribution of sampled colonies; markers represent individual nest locations with proportional pie charts indicating species composition at each site, where green represents A. cephalotes and orange with a diagonal hatch pattern represents A. laevigata. (D) Representative canopy cover of a typical A. cephalotes microhabitat; the selected image corresponds to a site with a canopy openness percentage (indicated in panel) approximating the mean estimate for the species. (E) Representative canopy cover of a typical A. laevigata microhabitat; the selected image corresponds to a site with a canopy openness percentage (indicated in panel) approximating the mean estimate for the species. Base map and data from OpenStreetMap and OpenStreetMap Foundation. The map contains information from OpenStreetMap and OpenStreetMap Foundation, which is made available under the Open Database License. Map generated using Python 3.12.3 with the Matplotlib, Geopandas, and Contextily libraries.

In this study, we characterized the fine-scale realized niche breadth and microhabitat associations of A. cephalotes and A. laevigata occurring sympatrically within the Andean region of Santander, Colombia. Our primary objective was to determine whether differences in realized niche breadth measured across fine-scale environmental gradients are associated with the contrasting persistence of these two species in human-modified landscapes. To characterize the realized niche of each species, we quantified the microhabitat parameters of 114 active colonies (n = 56 for A. cephalotes; n = 58 for A. laevigata; Figs 1A-C; S1 Table). For each nest, we measured canopy openness (Figs 1D and 1E), soil pH, mound surface conditions, and macro-vegetation type associations, mound surface temperature, while also quantifying mound architecture to explore whether nest characteristics differ between species. Utilizing multivariate dispersion metrics and affinity indices, we tested the hypotheses that (i) A. laevigata occupies a narrower realized niche than A. cephalotes and (ii) differences in realized niche breadth between the two species are associated with their contrasting occurrence in human-modified habitats. By testing these hypotheses, we help to clarify how differences in realized niche breadth may contribute to the contrasting responses of closely related ecosystem engineers to land-use change.

Materials and methods

Study area

The study area encompasses multiple locations in the department of Santander, Colombia across a south-to-north geographic transect spanning approximately 59 km. Specifically, 12 locations were sampled: 10 in the rural area of the municipality of Charalá, 1 in Ocamonte, and 1 in Barichara (S1 Table, Fig 1C). These locations, separated by several kilometres, were selected to capture variation in the regional distribution of both species in this part of the Colombian Andes.

Sampling design

Within each location, we identified Atta colonies by systematically surveying field transects. We selected the first active nest that met the minimum distance criterion of 100 m from previously sampled colonies. We established this threshold based on the maximum foraging and architectural boundaries of both species; mature A. cephalotes surface foraging networks regularly extend up to 65–78 m [38], while subterranean excavations of mature A. laevigata nests demonstrate that underground foraging tunnels can reach up to 70 m radially [44]. Enforcing a minimum 100 m buffer zone minimized the likelihood of territorial overlap and increased the independence of all localized microclimatic and edaphic samples. Only active colonies were included, defined by the presence of at least two active entrance holes (confirmed by worker activity or freshly excavated soil). Sampling was conducted in open grasslands and adjacent woody areas, where both species are known to occur; deep forest interiors were not explored.

Species identification followed the diagnostic characters described by Mackay and Mackay [45]. During field surveys, A. cephalotes workers consistently exhibited a lighter and more opaque tegument with a distinct head-thorax contrast, whereas A. laevigata workers appeared darker with a distinctly shinier tegument. In addition, A. laevigata soldiers consistently displayed a more intense reddish colouration than those of A. cephalotes (Figs 1A and 1B). We used mound architecture as a secondary field indicator; during the sampling season, A. cephalotes typically presented more robust mounds with abundant freshly excavated soil, while A. laevigata mounds were flatter.

Three colonies in one specific location (Villas) were classified as “Unknown” (U). Although the individuals matched the morphological criteria for A. laevigata, their mounds were constructed of masticated leaf fragments rather than excavated soil. We excluded these three colonies from the main analyses but we fully reported them in S2 Table.

Most sampling was conducted in publicly accessible areas intersected by public roads and footpaths, where no access permits were required. For colonies located within privately owned properties (including Choro Bajo, Ocamonte, Grima Baja, El Raizal, and Montefrío), field access was granted with verbal permission from the respective landowners or property managers, several of whom accompanied the sampling. The study was based on in situ measurements of active colonies. Two soldier ants were collected solely for photographic documentation (Fig. 1A–B) and euthanised by freezing prior to photography. We did not preserve or use individuals for tissue sampling or other biological analyses. Consequently, no scientific collecting permit was required.

Edaphic assessment

We measured soil pH by collecting a sample from a major active nest entrance. All samples were stored separately in plastic bags and air-dried for 48 h before the analysis. We prepared a 1:5 (w/v) soil-to-water suspension by mixing 2 g of soil with 10 ml of distilled water. After stirring, we allowed the mixture to settle for 10 minutes. We then determined pH using non-bleeding indicator strips (pH 0–14, MColorpHast™). Each strip was submerged for one minute, and the resulting colour was immediately compared against the reference scale of the manufacturer. All colour assessments were performed by the same observer under standardized lighting conditions.

Temperature recording

Internal and external temperatures in degrees Celsius (°C) were measured in situ using an HTC-2 digital thermometer positioned immediately above the mound surface. To record internal colony temperature, the device’s remote sensor probe was inserted approximately 10 cm into a major active nest entrance. The device remained in place for approximately five minutes until the temperature reading stabilized. We then recorded the internal colony temperature together with the ambient air temperature measured by the device’s integrated sensor.

Canopy openness and image processing

We characterized canopy openness using hemispherical photography with a 198° fisheye lens. Images were captured using a Redmi Note 14 Pro + 5G smartphone (3:4 aspect ratio; 3060 x 4080 px resolution; no flash). The device was mounted on a tripod, levelled parallel to the mound surface at its centre, and oriented upwards. Photographs were taken using a remote shutter to avoid camera shake.

During fieldwork, GPS watermarks were initially embedded in the images. However, we identified that these watermarks were unreliable due to satellite signal inconsistencies. We then removed all watermarks during post-processing to ensure data integrity and avoid interference with pixel analysis.

We developed an image processing pipeline in Python 3.12 using the OpenCV library. To exclude lens barrel artifacts, we defined a circular Region of Interest (ROI) using a binary calibration mask derived from a reference photograph of a uniform white surface (’Mask_White_FishEye.jpeg’). To standardize lighting variations, a differential gamma correction was applied based on sky conditions recorded during sampling (Clear sky: γ = 1.0; Partially cloudy: γ = 1.5; Overcast: γ = 2.0; S2 Table). Images were converted to greyscale and binarized using Otsu’s thresholding algorithm. Canopy openness was calculated as the ratio of white pixels (sky) to total pixels within the ROI, see S1 Supplementary Dataset for the photographs and associated light percentage estimates.

Vegetation assessment

We characterized the vegetation surrounding each colony within a 10 m radius from the mound edges. We recorded the presence of three general categories: Grasses (G), Bushes (B), and Trees (T). These categories were not mutually exclusive, allowing for the characterization of mixed vegetation structures at each site.

Mound characterization

We recorded external mound dimensions in centimetres (cm) using a standard measuring tape. Maximum length (L) was defined as the distance between the two most distant active entrance holes, while width (W) was measured as the maximum distance perpendicular to the length axis. We used these measurements to characterize the surface footprint of the colonies rather than for detailed architectural analysis. Assuming an elliptical shape, we estimated mound area (cm2) using the semi-major (L/2) and semi-minor (W/2) axes. We also calculated the elongation index as the L:W ratio. An elongation index of 1.0 indicates a circular mound and values > 1.0 indicate increasing ellipticity.

Statistical analysis

All statistical analyses were performed in Python 3.12.3 using the libraries scikit-learn version 1.8.0 [46], scipi version 1.17.1 [47], and scikit-bio version 0.7.2 [48]. Prior to statistical analyses, we assessed the distribution of all continuous variables using Shapiro–Wilk tests as well as the homogeneity of variances using Levene’s tests (S3 Table). Because most variables deviated from normality, species comparisons were performed using Permutational Multivariate Analysis of Variance (PERMANOVA), a permutation-based approach that does not rely on multivariate normality.

Analysis of environmental and architectural variables

To assess species differences in continuous environmental (soil pH, temperature, canopy openness) and architectural (mound area, shape ratio) variables, we performed separate one-factor PERMANOVA analyses based on Euclidean distance matrices following Anderson (2001) [49]. Euclidean distance matrices were calculated from standardized continuous measurements after z-score transformation. These matrices represented dissimilarities between colonies. Significance was assessed using 999 permutations directly on the Euclidean dissimilarity matrices. Species comparisons involved two groups (114 colonies), whereas geographic location analyses included 12 localities. Group dispersions were subsequently assessed using PERMDISP [50] to determine whether significant PERMANOVA results reflected differences in group centroids rather than differences in multivariate dispersion.

We calculated effect sizes (R²) only for species comparisons. The scikit-bio implementation of PERMANOVA reports pseudo-F statistics and permutation-based P-values but does not provide effect sizes. Thus, we algebraically derived R² values from the pseudo-F statistic for one-factor PERMANOVA models. We used the relationship between the pseudo-F ratio and the proportion of explained sums of squares as follows:

R2=F  df1F df1+df2, (1)

where F is the pseudo-F statistic, df1 is the numerator degrees of freedom g −1, and df2 is the denominator degrees of freedom N – g. We reported effect sizes only for species because these represented the primary explanatory factor of this study. Geographic location was evaluated separately to assess spatial heterogeneity rather than as a competing explanatory model.

Multivariate niche characterization

We performed a Principal Component Analysis (PCA) of the standardized environmental matrix to visualize the realized niche overlap and summarize the main environmental gradients separating the two species. We used the PCA implementation of scikit-learn (version 1.8.0) following the classical formulation described by Jolliffe (2002) [51]. Categorical vegetation data (Trees, Bushes, Grasses) were integrated into the PCA as binary presence/absence flags. A multivariate PERMANOVA [49] based on the Euclidean distance matrix of dissimilarity derived from these variables (999 permutations) was used to test for significant realized niche partitioning between species. We used the PERMANOVA implementation of the scikit-bio library as described before.

Habitat affinity and niche breadth

We evaluated habitat preferences using Indicator Value (IndVal) analysis to identify significant associations between each species and vegetation categories based on specificity (A) and fidelity (B). This analysis was implemented using NumPy (v2.4.4) and Pandas (v3.0.3), following the formulations of Dufrêne & Legendre (1997) and De Cáceres & Legendre (2009) [52,53]. Finally, realized niche breadth was quantified using three dispersion metrics: Standard Deviation (SD), Coefficient of Variation (CV), and Interquartile Range (IQR). All results were considered significant at p < 0.05.

Regional climatic characterization

To characterize the regional climatic context of the sampling sites, we extracted regional climatic variables from the ERA5-Land reanalysis dataset [54]. We retrieved data via the Copernicus Climate Data Store (CDS) API using the Python library cdsapi version 0.7.7. The study area was defined by a bounding box spanning 8.0° to 6.0° N and 74.5° to 72.0° W, covering a ~ 150 km × 150 km region included the sampled locations.

We processed the downloaded climatic datasets using the Python libraries xarray and rioxarray as follows

Average temperature

The 2m_temperature (t2m) data correspond to the month of February 2024, 2025, and 2026. We chose those three years to assess whether the regional thermal pattern during the sampling month was consistent across years. For each year, the hourly values were averaged over the 24-hour cycle and across the entire month to generate a monthly mean temperature. Units were converted from Kelvin to Celsius (°C).

Total annual precipitation

We used the total_precipitation (tp) variable for the full years 2024 and 2025 for January–July 2026. Because 2026 was still in progress at the time of analysis, we treated precipitation data for that year as a partial-year accumulation and we did not directly compare with the annual totals for 2024 and 2025. As this variable is provided as an accumulated value within each forecast day, only the final hourly recording (24:00) of each day was extracted to represent the daily total. We then summed such daily values to calculate the total annual accumulation in meters (m).

Total annual evaporation

Data for evaporation_from_bare_soil (evabs) were retrieved for 2024 and 2025 and for January–July 2026. We treated 2026 data as a partial-year accumulation because 2026 was still in progress at the time of analysis, and therefore this year was not directly compared with the annual totals for 2024 and 2025. Similar to precipitation, this is an accumulated variable; therefore, we extracted only the final hourly record of each day. To reflect total water loss from the surface, we calculated the absolute values (converting the model’s negative flux convention to positive) and multiplied them by 1,000 to report the final values in millimetres (mm).

We reprojected the final processed rasters from their native geographic coordinate system (WGS84, EPSG:4326) to Web Mercator (EPSG:3857) to ensure spatial alignment with the topographical base maps used for visualization. Sampling locations were overlaid on the resulting climatic maps to facilitate visual comparison with regional environmental gradients.

Use of AI-assisted technologies

During the preparation of this work, we used AI-powered technologies to assist with language editing and programming support. Specifically, we used Gemini (Gemini 3 Flash, Google) and ChatGPT-5.6 to improve writing clarity, correct grammatical errors, and reduce wordiness. We used these tools through targeted prompts (e.g., “Please correct wordiness and grammar of the following statement...”). Gemini was further used to assist in drafting and debugging Python code developed by the authors for image processing, data handling, and statistical analyses. In all cases, AI-assisted outputs were critically reviewed, verified, and revised by the authors before incorporation into the manuscript or analytical workflow. We did not use AI tools to generate the study hypotheses, experimental design, field data, statistical analyses, ecological interpretations, or scientific conclusions. All source data were generated by the authors, and all analytical decisions and interpretations remain entirely the responsibility of the authors.

Results

Realized niche characterization reveals fine-scale ecological differences between sympatric Atta species

To characterize the realized niches of both species, we quantified architectural (mound area and mound shape ratio), edaphic, and thermal profiles, along with canopy openness and vegetation affinity, for 114 Atta colonies across a heterogeneous landscape (Fig 1; S1 Fig; S1 and S2 Tables). Normality tests were conducted prior to analysis (S3 Table). Univariate PERMANOVA revealed that species identity significantly influenced most continuous variables, including mound area, soil pH, canopy openness, internal mound temperature, and thermal regulation capacity (p < 0.052 Table 1). Mounds of A. laevigata (69.1 ± 61.9 m2) were significantly larger than those of A. cephalotes (45.0 ± 37.5 m2). In contrast, mound shape ratio remained comparable between species (A. laevigata: 2.0 ± 1.0; A. cephalotes: 1.7 ± 0.9). Mean shape ratio for both species exceeded 1.0, indicating an elongated rather than circular mound geometry. Soil pH was slightly higher at A. laevigata (4.8 ± 0.2) than at A. cephalotes (4.6 ± 0.3) nests. Canopy openness showed the largest species effect with A. laevigata occurring in significantly more exposed sites (89.5 ± 6.9%) compared to A. cephalotes (67.6 ± 18.5%). Internal mound temperature also differed between species, with A. laevigata maintaining higher internal temperatures (25.1 ± 1.3°C) than A. cephalotes (24.0 ± 2.2°C; Table 1; S2 Fig). Thermal regulation capacity also differed between species (A. laevigata: −10.3 ± 4.7°C; A. cephalotes: −7.0 ± 4.3°C). PERMDISP revealed significant differences in within-species dispersion (interpreted here as realized niche breadth) for canopy openness, soil pH, and mound area, whereas thermal regulation capacity, internal temperature, and mound shape ratio did not differ in within-species dispersion. Geographic location explained additional variation in most environmental variables, although species identity remained significant across the principal ecological traits.

Table 1. Comparison of environmental and architectural variables between A. cephalotes and A. laevigata.

Variable Species Mean ± SD Species pseudo-F Species R² Species p PERMDISP p Location p
A. cephalotes A. laevigata
Canopy Openness (%) 67.66 ± 18.49 89.52 ± 6.75 71.221 0.389 0.001 0.001 0.001
Internal Temperature at ~10 cm (°C) 23.98 ± 1.38 25.14 ± 1.51 18.36 0.141 0.001 0.847 NA a
Thermal Regulation Capacity (°C) −7.07 ± 4.38 −10.46 ± 4.71 15.787 0.124 0.001 0.297 0.001
Mound Area (m²) 45.01 ± 37.45 70.31 ± 61.48 6.979 0.059 0.012 0.021 0.001
Soil pH 4.66 ± 0.37 4.81 ± 0.26 5.811 0.051 0.012 0.019 0.001
Shape Ratio 1.74 ± 0.92 2.03 ± 1.08 2.426 0.021 0.114 0.461 0.426

Values are presented as mean ± standard deviation (SD). Species differences were assessed using separate one-factor PERMANOVA analyses based on Euclidean distance matrices calculated from z-score standardized variables and evaluated with 999 permutations (α = 0.05). Species pseudo-F represents the ratio of among-species to within-species variation, with larger values indicating stronger separation between species. Species R² represents the proportion of variance explained by species identity. Species p denotes the permutation-derived p-value. PERMDISP p reports the significance of differences in multivariate dispersion between species, interpreted here as differences in realized niche breadth. Location p summarizes independent PERMANOVA analyses evaluating geographic variation among sampling localities.

aThe Location PERMANOVA result for Internal Temperature at ~10cm (°C) was intentionally not reported because absolute nest temperature is strongly influenced by the time of day at which colonies were sampled. Although we performed the analysis, we considered the location effect biologically confounded by temporal variation. Therefore we omitted the Location p from interpretation.

To assess the extent of realized niche separation, we integrated environmental and architectural data with binary-transformed vegetation presence (trees, bushes, and grasses) into a Principal Component Analysis (PCA; Fig 2A). The first two components accounted for 47.9% of the total variance. PC1 explaining 34.2% of the variance largely separated the two species. Along this axis, species tended to occupy two regions of the multivariate space although, the 95% confidence ellipses overlapped near the multivariate centroids. Eigenvector analysis identified tree-type vegetation, bush-type vegetation, and canopy openness as the primary drivers of partitioning on PC1 (S5 Table). Thermal regulation capacity, mound area, and grass presence contributed to a lesser extent along this primary axis. Although soil pH differed significantly between species in the univariate analyses (Table 1), it contributed little to separation along PC1. Instead, soil pH loaded primarily on PC2 together with mound shape ratio (S5 Table). Further generalized linear modelling confirmed that this second multivariate axis reflects site-specific edaphic baselines rather than direct colony-mediated soil modifications (S1 Text; S7 and S8 Tables). Multivariate PERMANOVA confirmed significant realized niche differentiation between species (pseudo-F = 27.01, p = 0.001), indicating that between-species multivariate differences greatly exceeded within-species variation.

Fig 2. Fine-scale realized niche characterization and habitat affinity.

Fig 2

(A) Principal Component Analysis (PCA) of environmental and architectural niche space for Atta species. Points represent individual colonies of A. cephalotes (green; n = 56) and A. laevigata (orange; n = 55). Crosses (X) indicate group centroids, and shaded areas represent 95% confidence ellipses for each species. The axes (PC1 and PC2) together explained 47.9% of the total variance. Loading vectors (arrows) indicate the direction and relative magnitude of the contribution of each environmental and architectural variable to the principal components. Vector direction indicates the relationship of each variable with the principal components, whereas vector length reflects its relative contribution to the species separation. Significant multivariate differentiation between species was confirmed in realized niche space via PERMANOVA based on Euclidean distances (pseudo-F = 27.01, df = 1, 109, p = 0.001, 999 permutations). (B) Vegetation affinity profile based on Indicator Value (IndVal) analysis for Trees, Bushes, and Grasses. The horizontal lines (dumbbells) represent the ecological distance in habitat association between the two species, where higher IndVal scores denote stronger specificity and fidelity to a vegetation category. (C) Radar plot comparing the relative multivariate dispersion (used here as a proxy for realized niche breadth) across five architectural and environmental variables for A. cephalotes (green) and A. laevigata (orange). For each variable, niche breadth was calculated from species-specific standard deviations (SD) and scaled relative to the maximum SD between species. Thus, a value of 1.0 represents the species with the greatest dispersion for that variable, whereas values below 1.0 represent proportional dispersion relative to that maximum. Values are therefore comparable between species within each variable, but not as absolute measures across variables. We evaluated differences in dispersion using PERMDISP (Table 1).

Contrasting vegetation associations contribute to realized niche differentiation

Indicator Value (IndVal) analysis supported the PCA by revealing the same pattern of microhabitat differentiation between species (Fig 2B; S6 Table). Bushes and trees were highly specific to A. cephalotes (A = 0.783 and 0.785), whereas neither vegetation type had a high specificity for A. laevigata (A < 0.22). Grasses demonstrated high fidelity for both species (B > 0.94). However, woody vegetation showed much higher fidelity to A. cephalotes colonies (B = 0.964 and 0.911 for bushes and trees, respectively) but was infrequently present in the vicinity of A. laevigata colonies (B < 0.28). Together, these patterns indicate that A. cephalotes colonies were found across a wider range of vegetation structures, while A. laevigata was largely restricted to open grass-dominated environments. Consequently, bushes and trees emerged as strong indicators for A. cephalotes (IndVal > 0.84), whereas no vegetation category was uniquely associated with A. laevigata, largely because grasses occurred with high fidelity in both species.

Realized niche breadth differed across environmental dimensions

We used two complementary metrics of within-species dispersion [SD and Interquartile Range (IQR)] to summarize differences in niche breadth for each environmental and architectural variable (Fig 2C; S4 Table). A. cephalotes exhibited substantially greater dispersion for canopy openness than A. laevigata, displaying an approximate 2.7-fold increase in SD (18.49 vs. 6.76) and a 6.1-fold increase in IQR (30.33 vs. 4.99). This pattern was consistent with the significant PERMDISP results (Table 1). For soil pH we observed a similar pattern of elevated niche breadth for A. cephalotes with a 1.4-fold higher SD (0.38 vs. 0.26) and a 2-fold higher IQR (0.60 vs. 0.30). Conversely, within-species dispersion in mound area was greater in A. laevigata, showing an approximate 1.6-fold increase in SD (61.49 vs. 37.45 m2) and a 1.5-fold increase in IQR (70.14 vs. 46.11 m2). Dispersion profiles of internal thermal regulation capacity and mound shape ratios were statistically comparable between both congeners (Table 1).

Regional environmental context

ERA5-Land reanalysis data indicated that the study area spans a pronounced regional climatic gradient, providing the climatic context within which we evaluated realized niche breadth (S3–S5 Figs). The northernmost locality, Choro Bajo, was consistently warmer and drier than the remaining sampling localities. The Choro Bajo location showed average February temperatures of 22.92°C, 22.07°C, and 20.85°C in 2024, 2025, and 2026, respectively, and annual precipitation of approximately 2.98 m in 2024 and 2.84 m in 2025. In contrast, localities along the southern portion of the transect experienced lower temperatures and generally higher precipitation. February temperatures at El Raizal reached minima of 16.46°C, 15.36°C, and 14.76°C in 2024, 2025, and 2026, respectively. Annual precipitation across the southern and central sampling region ranged from approximately 3.72 to 4.38 m in 2024 and 4.30 to 5.03 m in 2025. Bare-soil evaporation also varied spatially, although its pattern was less clearly associated with the north–south climatic gradient (S5 Fig).Within the Andean transect evaluated here, this gradient coincided with the apparent southern occurrence limit of A. laevigata, whereas A. cephalotes remained present throughout the study area.

Discussion

In this study, we characterized and compared the realized niche breadth of two sympatric ecosystem engineers across fine-scale environmental gradients, the leaf-cutting ants A. cephalotes and A. laevigata, in a region of the Colombian Andes. While both species overlapped across broad landscape categories within the zone of co-occurrence, they diverged most strongly at the fine-scale (Table 1; Fig 2A). This divergence was particularly pronounced for canopy openness, vegetation structure, and soil pH, in line with previous observations that sympatric Atta congeners segregate locally along structural and edaphic axes [34,36]. The greater within-species dispersion in A. cephalotes (Table 1; Fig 2C) is consistent with a broader realized niche and a generalist ecological strategy capable of exploiting a broader range of environmental conditions [17,43]. Conversely, the lower within-species dispersion in A. laevigata suggests ecological specialization.

Atta species are traditionally characterized as functional generalist herbivores because of their broad foraging habits and regional distribution [38,39,55]. However, this macro-scale classification often masks significant niche partitioning and specialization at the microhabitat level [35,36]. Our results indicate that while A. cephalotes closely matches the generalist archetype [56], A. laevigata exhibits greater specificity for multiple features of its microhabitat (Fig 2A). A near 3-fold higher dispersion for canopy openness in A. cephalotes compared to A. laevigata, coupled with higher SD and IQR values for soil pH (Table 1, S4 Table), indicates that while the former maintains a high capacity to thrive in a variety of microhabitats [42,43,57], the latter remains restricted to a narrower range of environmental axes (Fig 2C). Importantly, both canopy openness and soil conditions are directly modified by land-use change [15,17]. Some temperate studies suggest soil pH stability across land-use types [58]. However, evidence from the Neotropics indicates that forest-to-pasture conversion significantly increases soil pH and nutrient availability [59] and cattle urine deposition further intensifies this effect [60]. Such localized increases in pH fall within the relatively narrow edaphic range occupied by A. laevigata [40]. In contrast, the broader edaphic range of A. cephalotes may facilitate its occurrence in forest edges and other partially shaded habitats, where soil conditions are more heterogeneous [61].

The architectural and thermal profiles of the colonies suggest that a conserved nest architecture can accommodate distinct microclimatic strategies. On the one hand, mound shape ratios remained comparable across species suggesting a conserved architectural blueprint associated with efficient gas exchange across several species within the Atta genus [62–64]. Variation in mound shape ratios (Table 1) suggests flexibility in mound geometry, as previously suggested for colonies growing around roots or sloping terrain [40]. The reduced mound area in A. cephalotes may reflect spatial constraints imposed by dense woody vegetation [36]. On the other hand, the resulting internal environments diverged sharply. A. laevigata maintained a significantly higher nest temperatures, coupled with its occupation of highly exposed sites (~90% canopy openness). Together, these findings suggest a strategy in which solar exposure contributes to maintaining favourable nest temperatures in open environments (S2 Fig; S3 Table) [43,62]. In contrast, the lower and more variable internal temperatures of A. cephalotes reflect its affinity for shaded micro-refuges (Fig 2B; S6 Table). This pattern is consistent with previous studies showing that colonies can modify local forest structure and microclimatic conditions [65]. Nest interiors in A. laevigata remained, on average, more than 10 °C cooler than the surrounding air, compared with approximately 7 °C in A. cephalotes (Table 1; S2 Fig). Although ambient temperatures varied with sampling time, this larger temperature difference indicates that A. laevigata maintained stronger thermal buffering under the more exposed conditions. Such buffering is likely an advantage in cleared pastures where solar exposure is maximal [15,40]. While sampling location denoted a significant influence on these variables (Table 1), the stronger influence of species identity in canopy openness and thermal regulation is consistent with distinct micro-environmental preferences [34,35] that contribute to niche partitioning.

Soil pH differed significantly between A. cephalotes and A. laevigata sampling sites (Table 1). Ant biological activity, such as organic waste accumulation, has often been proposed as a driver of localized soil modification [32]. However, our regression analyses did not support direct colony-mediated modification of surface soil pH, as neither mound area nor mound shape predicted pH variation (see S1 Supplementary Text). Instead, the separation along PC2 (Fig 2A; S5 Table) is more consistent with underlying differences in soil conditions and land-use history than with direct soil engineering by the colonies. The relatively higher and more stable pH values observed in A. laevigata sites is consistent with its strong affinity for cattle pastures, where soil chemistry is frequently modified by livestock urine and agricultural inputs [59,60]. Conversely, the lower and more variable pH levels in A. cephalotes sites (4.6 vs. 4.8; S3 Table, S1C Fig) align with the organic-rich profiles typical of forest-edge soils in this region [61]. Although the mean difference between A. cephalotes and A. laevigata may appear numerically small, the logarithmic nature of the pH scale means this represents a substantial difference in hydrogen ion concentration. Such a shift may influence the symbiotic fungus, Leucoagaricus gongylophorus [12]. Notably, the pH values observed for both species align closely with the known physiological optima for L. gongylophorus; fungus gardens are typically maintained at a pH of approximately 5.0 to optimize growth and suppress the proliferation of competitor microbes [66]. Although A. laevigata occupies a wide range of open anthropogenic habitats [40], it does so within a comparatively narrow range of soil pH (Table 1; Fig 2C). Whether this narrow range reflects a deliberate colonization preference or is a secondary consequence of its strict requirement for open-canopy environments remains unresolved.

Vegetation associations differed markedly between the two species (Fig 2B; S6 Table). A. cephalotes exhibited a high affinity for all three vegetation categories (trees, bushes, and grasses). This association with multiple vegetation strata reflects the species’ ability to occupy diverse microhabitats [38,39], likely contributing to its success in heterogeneous forest edges and urban landscapes [42]. In contrast, A. laevigata demonstrated a marked association with grass-dominated environments. A. laevigata is considered a mixed dicot–grass cutter rather than a strict grass specialist, yet in our study it showed a strong association with grass-dominated habitats, consistent with previous evidence linking shifts toward grass exploitation with the expansion of open landscapes [35]. Together, these patterns indicate that the two species partition the landscape not only along microclimatic and edaphic gradients but also according to vegetation structure (Fig 2A). This vegetation segregation further supports the narrower realized niche of A. laevigata inferred from the multivariate analyses.

The differences in realized niche breadth suggest that A. cephalotes and A. laevigata may respond differently to land-use change. For example, as forests are transformed into open landscapes, environmental conditions increasingly resemble those occupied by A. laevigata. This interpretation is consistent with previous observations showing significantly higher colony survival and growth of A. laevigata in man-made clearings than in undisturbed vegetation [40]. While specialists often face range contractions [67], the loss of primary forest habitat appears to be pushing A. cephalotes into urban mosaics [42,68], where soils are often chemically heterogeneous because of anthropogenic disturbance [69,70]. Furthermore, urban refuges like residential gardens provide a light-and-shadow matrix in heat islands that resemble the natural forest edge (Fig 2) [42]. This relationship between environmental tolerance and habitat occupancy aligns with a general ecological pattern in which niche breadth is a key predictor of geographical range and species’ vulnerability to environmental change [17,67,71–73]. Our findings are also consistent with recent studies in butterflies and terrestrial snails showing that broader niche breadths are associated with greater persistence across human-modified landscapes, whereas species occupying narrower niche space are more vulnerable to land-use change [18,21,28]. We complement such recent studies conducted across broader geographic scales by demonstrating that the relationship between niche breadth and persistence is also evident when realized niche breadth is quantified directly from fine-scale environmental gradients measured in the field.

Beyond the environmental gradients that we evaluated here, predation may also contribute to the contrasting persistence of both species in human-modified landscapes. Leaf-cutting ants are attacked by a variety of natural enemies, including phorid flies, armadillos, beetles, birds, and spiders, which can influence colony establishment, foraging activity, and colony survival [74,75]. However, little is known about whether changes in predator communities across forests, pastures, and urban environments differentially affect A. cephalotes and A. laevigata. An additional anthropogenic pressure may arise from the traditional harvest of reproductive females of A. laevigata for human consumption in the Santander region, whereas comparable exploitation of A. cephalotes is disproportionately lower [76]. Since the demographic consequences of this harvest remain unknown, both natural predation and human harvesting deserve further attention as potential ecological filters acting alongside realized niche breadth in shaping species persistence under land-use change.

Differences between species also extended to mound architecture. Colonies of A. cephalotes produced overall smaller and less variable mounds than A. laevigata (Table 1; S4 Table). This pattern probably reflects structural constraints imposed by tree roots [36]. In urban environments, where space is often limited, the same characteristic could facilitate colony persistence. Artificial lighting may further contribute to differences in urban colonization. Because A. cephalotes performs nocturnal nuptial flights [77], its alates may be more susceptible to light-induced disruption of orientation than the diurnal flights of A. laevigata [78]. Similar disruption of nocturnal nuptial flights by light pollution has been reported in A. texana [78], a pattern consistent with disruption of the dorsal-light response described for flying insects [79–81]. Together, these observations suggest that different forms of human-modified landscapes may favour different ecological strategies. Consistent with the contrasting realized niche breadths documented here, A. laevigata may be favoured by the expansion of agropastoral landscapes, whereas the broader environmental tolerance of A. cephalotes may facilitate persistence in heterogeneous urban environments.

Field observations across the study area complemented the quantitative analyses of realized niche breadth (S3-S5 Figs). At the northernmost site (Choro Bajo), both species coexisted under comparatively warmer and drier regional climatic conditions, characterized by higher February temperatures, substantially lower annual precipitation, and relatively high bare-soil evaporation compared with most localities farther south. Conversely, at the southernmost sites (La Victoria and El Raizal) characterized by lower temperatures and generally higher annual precipitation than Choro Bajo, only A. cephalotes was present. The absence of A. laevigata at these sites, despite available open pasture, suggests its distribution is constrained by regional climatic conditions beyond those occupied elsewhere in the study area. Lower temperatures combined with greater precipitation are therefore plausible environmental factors associated with the absence of A. laevigata from this region. While A. cephalotes appears capable of colonizing these humid, cold enclaves, the narrower realized niche of A. laevigata likely restricts its distribution to warmer, better-drained landscapes [34,40]. Additional field observations also suggested that mound architecture may vary toward the climatic limits of the species’ distribution. We noted shifts in mound architecture at the arid northern limit, such as apparent reductions in entrance hole diameters in A. laevigata [62,63]. Representative photographs were archived in the ground-level photographic repository (S2 Dataset) for future comparisons. While we did not quantify these observations, they may motivate future investigation into potential behavioural responses under high desiccation risk at the species’ range margins [43]. Together, these qualitative observations complement the quantitative analyses by suggesting that A. laevigata is constrained by a relatively narrow set of environmental conditions at a regional and local scale, whereas A. cephalotes occupies a broader range of climates and microhabitats.

We also identified several methodological aspects that deserve further attention. First, some sampling locations contained substantially more colonies of one species than the other because of their natural distribution across the landscape. Future designs should aim for a more homogeneous species distribution across sites to control for potential site-specific biases. Second, while we maintained a minimum distance of 100 meters between colonies to ensure independence, the future integration of precise GPS coordinates would allow for a more granular analysis of micro-climatic gradients and spatial autocorrelation [38,39]. Third, although the variables that we selected for this study (pH, canopy openness, and mound architecture) captured key dimensions of the realized niche, they represent only a subset of a multivariate space [12]. To further refine our understanding of niche breadth, future research should incorporate additional environmental and biological axes, such as soil moisture, mound entrance dimensions, and specific foraging preferences. Fourth, our inference that differences in realized niche breadth contribute to contrasting persistence in human-modified landscapes is based on direct measurements of niche breadth combined with previously reported presence of A. cephalotes in urban areas. Future studies should evaluate colony survival, growth, and persistence across human-modified environments within the same study area to directly test this hypothesis. Finally, as these ecosystem engineers exist in an obligate symbiosis with the fungus L. gongylophorus [34,36], focusing solely on the ant provides an incomplete picture. Because colony performance depends on both partners, future work should evaluate how the responses of both the ants and L. gongylophorus to environmental conditions contribute to differences in realized niche breadth.

Land-use change in the Anthropocene is reshaping species distributions across natural and human-modified landscapes [15]. As our analyses suggest, agropastoral expansion could favour the open-canopy specialist A. laevigata, while simultaneously displacing A. cephalotes from its typical woody habitats. This shift involves more than species turnover; it may alter nutrient cycling and other ecosystem processes within shaded forest patches. While A. cephalotes nests are known to create localized nutrient-depleted zones [32] and significantly elevate CO2 emissions [82], they also drive essential forest heterogeneity by altering canopy structure and light infiltration [65]. The decline of this engineer may trigger ecological cascades in forest remnants [36,39]. At the same time, the increasing occurrence of A. cephalotes in urban environments and the expansion of A. laevigata across agricultural landscapes may increase the frequency of human–ant interactions, potentially amplifying their impact as pests [42,55]. Understanding the environmental filters associated with land-use change is therefore important for improving the management of human-modified landscapes by helping predict where A. laevigata is likely to expand and where A. cephalotes may increase occurrence in urban areas.

Conclusions

We investigated whether the leaf-cutter ants A. cephalotes and A. laevigata in an area of the Colombian Andes differed in realized niche breadth across fine-scale environmental gradients, and whether those patterns are consistent with ecological strategies of generalism and specialization. Such strategies may shape species response to the ecological filter of ongoing land-use change. A. cephalotes presented a broader niche breadth for canopy openness and soil pH, along with a high association with woody-type vegetation. In contrast, A. laevigata showed a narrower niche for these environmental variables and an affinity for grasses in open areas, with a larger heat buffering capacity. Mound architecture characterization revealed a comparable elliptical shape, while mounds of A. laevigata were significantly larger than those of A. cephalotes. Our results support the hypothesis of generalism in A. cephalotes capable of occupying a broader range of microhabitats at local and regional scale, while also suggesting specialization of A. laevigata, better suited for cleared agro-pastoral landscapes. The findings suggest that a broader realized niche breadth is consistent with the documented occurrence of A. cephalotes in urban areas. This study contributes to the understanding of species responses to the ecological filter created by land-use change in view of the growing demand for agricultural lands and may support the management of human-modified landscapes.

Supporting information

S1 Text. Disentangling the drivers of Principal Component 2 (PC2).

Additional analysis examining the relative contribution of environmental variables to PC2.

(DOCX)

pone.0351518.s001.docx (27.7KB, docx)
S1 Table. Representative geographic coordinates and corresponding visualization codes for the study locations.

For each of the 12 sampled sites, a single representative GPS coordinate (decimal degrees, WGS 84 datum) is provided. The standardized two-letter abbreviation codes (Two-letter code) are explicitly defined here to facilitate spatial cross-referencing and improve graphical visualization in the box-plot distributions (S1 Fig).

(DOCX)

pone.0351518.s002.docx (27.8KB, docx)
S2 Table. Comprehensive raw dataset of architectural, edaphic, and micro-climatic variables for Atta colonies.

This external CSV dataset contains the microhabitat profiles and structural measurements recorded for 117 active sympatric colonies across a latitudinal and elevational transect in Santander, Colombia. Species identity is specified under the Species column, which comprises A. cephalotes (n = 56), A. laevigata (n = 58), and three colonies designated as U (n = 3), denoting individuals of ambiguous micro-habitat x morphology that could not be confidently classified to the species level in the field; these three unclassified colonies were included in the raw metadata for transparency but were systematically excluded from downstream species-specific statistical analyses. Column headers are defined as follows: Num_Col represents the unique numerical identifier assigned to each sampled nest; Location denotes the specific geographic site of collection (spanning 12 distinct sampling localities); Date_Fieldwork indicates the exact date of data collection; and Species identifies the target organism. Structural parameters include mound Length (cm), Width (cm), and Number_Active_Holes. Although Number_Active_Holes was ultimately excluded from downstream statistical modelling. Micro-climatic and edaphic axes consist of Out_Temp (°C; ambient external temperature), In_Temp (°C; internal mound temperature at ~10 cm depth), and Soil_pH. Canopy structural metrics are represented by Time_Photo (the exact timestamp of canopy image capture) and Photo_File (the high-resolution hemispherical photograph filename used to calculate canopy openness). In all main text analyses and figures, the calculated values derived from these hemispherical photographs are referred to as Canopy Openness (%), corresponding to the raw Light_Percentage values presented herein. Environmental background states are qualified under Sky (visual assessment of cloud cover parameters during sampling).

(CSV)

pone.0351518.s003.csv (10.6KB, csv)
S3 Table. Descriptive statistics and Shapiro–Wilk normality tests for ecological variables measured in A. cephalotes (C) and A. laevigata (L).

Means, standard deviations (SD), and p-values are presented for each species. Variables were classified as normally distributed when both species showed p > 0.05. The departure from normality observed for internal temperature in A. laevigata is likely attributable to the truncated sampling period (ending at approximately 14:00), which captured only the warming phase of the daily thermal cycle.

(DOCX)

pone.0351518.s004.docx (28.1KB, docx)
S4 Table. Dispersion metrics for architectural and environmental variables.

Intraspecific variation for A. cephalotes (C) and A. laevigata (L) is summarized using Standard Deviation (SD) and Interquartile Range (IQR). Larger values indicate greater within-species dispersion for the corresponding variable. Mound Area is reported in m2 to facilitate ecological interpretation.

(DOCX)

pone.0351518.s005.docx (27.4KB, docx)
S5 Table. Percentage contribution of ecological and structural variables to the first two axes of the Principal Component Analysis (PCA).

Variables are ordered by their contribution to PC1. High contributions on PC1 reflect local vegetation density and canopy architecture, whereas high loadings on PC2 differentiate colony dimensions (mound area and shape ratio) and chemical soil properties (pH).

(DOCX)

pone.0351518.s006.docx (27.2KB, docx)
S6 Table. Indicator Value (IndVal) analysis of vegetation categories (Grasses, Bushes, and Trees) within a 10 m radius of A. cephalotes and A. laevigata mounds.

Because vegetation categories were not mutually exclusive, indices were calculated based on the independent presence of each structural component. Specificity (A) indicates the exclusivity of a species to a vegetation category, Fidelity (B) indicates the frequency of the category’s occurrence with the species, and the IndVal index represents the combined indicative strength.

(DOCX)

pone.0351518.s007.docx (27.3KB, docx)
S7 Table. Generalized Linear Model (GLM) regression results for the additive effects of colony architecture and species identity on soil pH.

The model was fitted using a Gaussian error distribution and an identity link function (N = 111 colonies, reflecting the subset of the 114 total downstream colonies with complete soil pH records). Geographic localities were incorporated as categorical dummy variables to serve as spatial blocks, isolating landscape-level edaphic baselines. The reference baseline (Intercept) reflects a baseline geographic control site. Coefficients (β), standard errors (SE), Wald z-scores, and corresponding p-values are provided for each predictor variable.

(DOCX)

pone.0351518.s008.docx (29.2KB, docx)
S8 Table. Generalized Linear Model (GLM) regression results evaluating the conditional effects and species-specific interactions of colony traits on soil pH.

The model utilizes a Gaussian error distribution and an identity link function (N = 111 colonies, reflecting the subset of the 114 total downstream colonies with complete soil pH records) to test the biological hypothesis that soil engineering capacity varies as a function of species identity (represented by the multiplicative interaction term Mound_Area:Species[T.L]). Geographic localities are controlled via spatial blocking parameters. Coefficients (β), standard errors (SE), Wald z-scores, and p-values are reported for all fixed effects and spatial block contrasts.

(DOCX)

pone.0351518.s009.docx (29.3KB, docx)
S1 Fig. Multivariate assessment of mound architecture, edaphic properties, and thermal regulation across sampling locations.

Box-and-whisker plots (A–E) illustrate the intraspecific and interspecific variation for A. cephalotes (green) and A. laevigata (orange) across twelve distinct geographic sites. (A) Mound Area, presented as Log10-transformed values (cm2) to normalize the highly skewed distribution of colony sizes. (B) Shape Ratio, defined as the degree of surface symmetry. (C) Soil pH, representing the chemical conditions of the mound substrate. (D) Light Percentage, indicating the level of canopy openness at the nest site. (E) Temperature Difference, representing the thermal gradient between the internal colony core at ~10 cm and the external environment (°C). Shaded boxes denote the interquartile range (IQR), horizontal lines represent the median, and whiskers extend to 1.5 times the IQR. Two-letter codes at the base of each distribution correspond to specific sampling locations (e.g., MF: Montefrio, NZ: Nemizaque, etc.; see S1 Table for full location metadata).

(DOCX)

pone.0351518.s010.docx (231KB, docx)
S2 Fig. Diel thermal profiles of Atta colony interiors.

Points represent individual temperature measurements (n = 114) recorded at approximately 10 cm depth for A. cephalotes (green circles) and A. laevigata (orange crosses). Trend lines represent a second-order polynomial regression (R2 fit), with shaded ribbons indicating the 95% confidence intervals. A. laevigata colonies exhibited significantly higher internal temperatures compared to A. cephalotes (PERMANOVA test: ΔT = 1.2°C, p = 0.001; S3 and S4 Tables). The widening of the confidence interval for A. laevigata after 14:00 reflects the increased statistical uncertainty at the upper bound of the sampling window for this species.

(DOCX)

pone.0351518.s011.docx (980.4KB, docx)
S3 Fig. Regional average February temperature across the study area in Santander, Colombia, derived from ERA5-Land reanalysis data.

Panels (A–C) show the average 2 m air temperature (°C) for February 2024, 2025, and 2026, respectively, using a shared colour scale ranging from 16.74°C (yellow; lower temperatures) to 22.92°C (deep red; higher temperatures). All climatic heatmaps are georeferenced and overlaid on an OpenStreetMap basemap of the sampling region. Black points indicate the fieldwork locations where Atta colonies were surveyed, with location names provided for geographic reference across the latitudinal and elevational gradient of the study area. The map contains information from OpenStreetMap and OpenStreetMap Foundation, which is made available under the Open Database License. Map generated using Python 3.12.3 with the Matplotlib, Geopandas, and Contextily libraries.

(DOCX)

pone.0351518.s012.docx (322KB, docx)
S4 Fig. Regional total precipitation across the study area in Santander, Colombia, derived from ERA5-Land reanalysis data.

Panels (A–B) show the total annual accumulated precipitation (m) in 2024 and 2025, respectively, using a shared colour scale ranging from approximately 1.6 m (yellow; lower precipitation) to 2.5 m (deep blue; higher precipitation). Panel (C) shows cumulative precipitation from January to July 2026 and uses a separate colour scale because it represents a partial year. All climatic heatmaps are georeferenced and overlaid on an OpenStreetMap basemap of the sampling region. Black points indicate the fieldwork locations where Atta colonies were surveyed, with location names provided for geographic reference across the latitudinal and elevational gradient of the study area. The map contains information from OpenStreetMap and OpenStreetMap Foundation, which is made available under the Open Database License. Map generated using Python 3.12.3 with the Matplotlib, Geopandas, and Contextily libraries.

(DOCX)

pone.0351518.s013.docx (306.1KB, docx)
S5 Fig. Regional total bare-soil evaporation across the study area in Santander, Colombia, derived from ERA5-Land reanalysis data.

Panels (A–B) show the total annual accumulated bare-soil evaporation (mm) in 2024 and 2025, respectively, using a shared colour scale ranging from approximately 267 mm (yellow; lower evaporation) to 377 mm (deep blue; higher evaporation). Panel (C) shows cumulative bare-soil evaporation from January to July 2026 and uses a separate colour scale because it represents a partial year. All climatic heatmaps are georeferenced and overlaid on an OpenStreetMap basemap of the sampling region. Black points indicate the fieldwork locations where Atta colonies were surveyed, with location names provided for geographic reference across the latitudinal and elevational gradient of the study area. The map contains information from OpenStreetMap and OpenStreetMap Foundation, which is made available under the Open Database License. Map generated using Python 3.12.3 with the Matplotlib, Geopandas, and Contextily libraries.

(DOCX)

pone.0351518.s014.docx (321.8KB, docx)
S1 Dataset. Characterization of canopy openness across sampled colonies via hemispherical photography.

This PDF document compile the complete photographic registry for all 117 surveyed Atta colonies along the regional transect. Each row presents a pairwise comparison containing: (left) the raw hemispherical photograph converted to greyscale, and (right) the binarized silhouette version resulting from the interactive threshold masking process. Each pair is labelled with its unique image identifier (Photo_File), the selected binarization algorithm context (Sky: S [sunny], C [cloudy] or P [partially cloudy]), the specific mathematically applied Gamma correction factor, and the final estimated light percentage calculated over the mound. This light percentage serves as our proxy for canopy openness used in all downstream niche breadth and partitioning multivariate analyses.

(PDF)

pone.0351518.s015.pdf (7.6MB, pdf)
S2 Dataset. Ground-level photographic registry of colony mound architectures.

This compressed file (Supplementary_Dataset_S2.zip) contains the complete repository of fieldwork photographs of mounds for the 117 surveyed Atta colonies. The dataset includes wide-angle ground-level photographs of each distinct nest mound, captured utilizing the same hemispherical fish-eye lens system described for the canopy sub-canopy characterization in the Materials and Methods section. Additionally, some standard-format (non-distorted) landscape photographs are provided. While these visual records were not deployed as quantitative variables in downstream statistical modelling, they are archived here to provide transparent empirical evidence and an environmental record of the regional fieldwork. The .zip file was deposited at Zenodo and it is publicly available at https://doi.org/10.5281/zenodo.20342937.

(DOCX)

pone.0351518.s016.docx (26.7KB, docx)

Acknowledgments

I am profoundly grateful to my parents, María Cristina Castillo Sandoval and Víctor Ángel García Aguillón, whose invaluable support made this research possible. Their endurance and dedication during the fieldwork were essential for the successful collection of the colony samples. Furthermore, our endless discussions regarding the natural history and behaviour of these ecosystem engineers deeply shaped the conceptualization of this study; this manuscript is a testament to their lifelong support of my academic journey. I am also sincerely grateful to my sister, Francy Alejandra García Castillo, for generously providing measurement equipment essential for our field data collection. I sincerely thank Alejandro Mejía for his invaluable local knowledge and field assistance in locating Atta colonies in Grima Baja and for providing information that guided us to the sampling area in Choro Bajo. I also thank Rosina Soler for her expert professional advice in curating the environmental variable matrix during the fieldwork planning phase, as well as for her insightful feedback during the elaboration of this manuscript.

Data Availability

All relevant data are fully available without restriction. The original environmental measurements for the 114 colonies analysed in this study are provided in the Supporting Information (S2 Table). Ground-level photographs documenting colony mound architecture are publicly archived in Zenodo (https://doi.org/10.5281/zenodo.20342937). The hemispherical photographs used to estimate canopy openness are publicly archived in Zenodo (https://doi.org/10.5281/zenodo.20344008). The ERA5-Land reanalysis data used for the regional climatic characterization are archived in Zenodo (https://doi.org/10.5281/zenodo.21877589). The Python scripts and Jupyter notebooks used for image processing, statistical analyses, climatic data downloading and processing, and figure generation are archived in Zenodo (https://doi.org/10.5281/zenodo.21886892), with the corresponding development repository available on GitHub. The original image files (jpg) used to create Figures 1A and 1B were deposited publicly in the GitHub repository https://github.com/fernandoGarcia21/Atta-Realized-Niche-Breadth and those files were not used to generate any analysis.

Funding Statement

The author(s) received no specific funding for this work.

References

  • 1.Boyle MJW, Bishop TR, Luke SH, Van Breugel M, Evans TA, Pfeifer M. Localised climate change defines ant communities in human-modified tropical landscapes. Functional Ecology. 2021;35:1094–108. doi: 10.1111/1365-2435.13737 [DOI] [Google Scholar]
  • 2.Newbold T, Hudson LN, Hill SLL, Contu S, Lysenko I, Senior RA, et al. Global effects of land use on local terrestrial biodiversity. Nature. 2015;520(7545):45–50. doi: 10.1038/nature14324 [DOI] [PubMed] [Google Scholar]
  • 3.Winkler K, Fuchs R, Rounsevell M, Herold M. Global land use changes are four times greater than previously estimated. Nat Commun. 2021;12(1):2501. doi: 10.1038/s41467-021-22702-2 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Foley JA, Defries R, Asner GP, Barford C, Bonan G, Carpenter SR, et al. Global consequences of land use. Science. 2005;309(5734):570–4. doi: 10.1126/science.1111772 [DOI] [PubMed] [Google Scholar]
  • 5.Gibbs HK, Ruesch AS, Achard F, Clayton MK, Holmgren P, Ramankutty N, et al. Tropical forests were the primary sources of new agricultural land in the 1980s and 1990s. Proc Natl Acad Sci U S A. 2010;107(38):16732–7. doi: 10.1073/pnas.0910275107 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Ghalambor CK, Mckay JK, Carroll SP, Reznick DN. Adaptive versus non-adaptive phenotypic plasticity and the potential for contemporary adaptation in new environments. Funct Ecol. 2007;21:394–407. doi: 10.1111/j.1365-2435.2007.01283.x [DOI] [Google Scholar]
  • 7.Merilä J, Hendry AP. Climate change, adaptation, and phenotypic plasticity: the problem and the evidence. Evol Appl. 2014;7(1):1–14. doi: 10.1111/eva.12137 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.McKinney M, Lockwood J. Biotic homogenization: A few winners replacing many losers in the next mass extinction. Trends Ecol Evol. 1999;14(11):450–3. doi: 10.1016/s0169-5347(99)01679-1 [DOI] [PubMed] [Google Scholar]
  • 9.Filgueiras BKC, Peres CA, Melo FPL, Leal IR, Tabarelli M. Winner-loser species replacements in human-modified landscapes. Trends Ecol Evol. 2021;36(6):545–55. doi: 10.1016/j.tree.2021.02.006 [DOI] [PubMed] [Google Scholar]
  • 10.Eriksson BK, Hillebrand H. Rapid reorganization of global biodiversity. Science. 2019;366(6463):308–9. doi: 10.1126/science.aaz4520 [DOI] [PubMed] [Google Scholar]
  • 11.Hirzel AH, Le Lay G. Habitat suitability modelling and niche theory. J Appl Ecol. 2008;45:1372–81. doi: 10.1111/j.1365-2664.2008.01524.x [DOI] [Google Scholar]
  • 12.Kearney M, Porter W. Mechanistic niche modelling: Combining physiological and spatial data to predict species’ ranges. Ecol Lett. 2009;12(4):334–50. doi: 10.1111/j.1461-0248.2008.01277.x [DOI] [PubMed] [Google Scholar]
  • 13.Williams JW, Jackson ST. Novel climates, no-analog communities, and ecological surprises. Front Ecol Environ. 2007;5:475–82. doi: 10.1890/070037 [DOI] [Google Scholar]
  • 14.Liu Z, He C, Wu J. The Relationship between Habitat Loss and Fragmentation during Urbanization: An empirical evaluation from 16 world cities. PLoS One. 2016;11(4):e0154613. doi: 10.1371/journal.pone.0154613 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Fahrig L. Effects of habitat fragmentation on biodiversity. Annu Rev Ecol Evol Syst. 2003;34:487–515. doi: 10.1146/annurev.ecolsys.34.011802.132419 [DOI] [Google Scholar]
  • 16.Sexton JP, Montiel J, Shay JE, Stephens MR, Slatyer RA. Evolution of ecological niche breadth. Annu Rev Ecol Evol Syst. 2017;48:183–206. doi: 10.1146/annurev-ecolsys-110316-023003 [DOI] [Google Scholar]
  • 17.Slatyer RA, Hirst M, Sexton JP. Niche breadth predicts geographical range size: a general ecological pattern. Ecol Lett. 2013;16(8):1104–14. doi: 10.1111/ele.12140 [DOI] [PubMed] [Google Scholar]
  • 18.Wehner K, Renker C, Simons NK, Weisser WW, Blüthgen N. Narrow environmental niches predict land-use responses and vulnerability of land snail assemblages. BMC Ecol Evol. 2021;21(1):15. doi: 10.1186/s12862-020-01741-1 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Carscadden KA, Emery NC, Arnillas CA, Cadotte MW, Afkhami ME, Gravel D, et al. Niche Breadth: Causes and Consequences for Ecology, Evolution, and Conservation. Quarterly Rev Biol. 2020;95(3):179–214. doi: 10.1086/710388 [DOI] [Google Scholar]
  • 20.Cordier JM, Barberá I, Huais PY, Tomba AN, Osorio-Olvera L, Martinez-Meyer E. Niche structure explains amphibians’ responses to habitat alteration. Global Ecol Biogeography. 2025;34:e70045. doi: 10.1111/geb.70045 [DOI] [Google Scholar]
  • 21.Colom P, Tejeda A, Bonelli S, Fontaine B, Kuussaari M, Maes D. The interplay of climate change, urbanisation, and species traits shapes european butterfly population trends. Global Ecol Biogeography. 2026;35:e70204. doi: 10.1111/geb.70204 [DOI] [Google Scholar]
  • 22.Di Cecco GJ, Hurlbert AH. Multiple dimensions of niche specialization explain changes in species’ range area, occupancy, and population size. Front Ecol Evol. 2022;10:921480. doi: 10.3389/fevo.2022.921480 [DOI] [Google Scholar]
  • 23.Liordos V, Jokimäki J, Kaisanlahti-Jokimäki M-L, Valsamidis E, Kontsiotis VJ. Niche analysis and conservation of bird species using urban core areas. Sustainability. 2021;13(11):6327. doi: 10.3390/su13116327 [DOI] [Google Scholar]
  • 24.Pagani‐Núñez E, Liang D, He C, Zhou X, Luo X, Liu Y, et al. Niches in the Anthropocene: passerine assemblages show niche expansion from natural to urban habitats. Ecography. 2019;42(8):1360–9. doi: 10.1111/ecog.04203 [DOI] [Google Scholar]
  • 25.Avidad PM, Clavero M, Viana DS. Climate and land-use change leading to niche expansion and shifts in birds. J Biogeogr. 2025;52:443–53. doi: 10.1111/jbi.15045 [DOI] [Google Scholar]
  • 26.Waldock CA, De Palma A, Borges PAV, Purvis A. Insect occurrence in agricultural land‐uses depends on realized niche and geographic range properties. Ecography. 2020;43(11):1717–28. doi: 10.1111/ecog.05162 [DOI] [Google Scholar]
  • 27.Swihart RK, Lusk JJ, Duchamp JE, Rizkalla CE, Moore JE. The roles of landscape context, niche breadth, and range boundaries in predicting species responses to habitat alteration. Diversit Distributions. 2006;12:277–87. doi: 10.1111/j.1366-9516.2006.00242.x [DOI] [Google Scholar]
  • 28.Riva F, Barbero F, Balletto E, Bonelli S. Combining environmental niche models, multi-grain analyses, and species traits identifies pervasive effects of land use on butterfly biodiversity across Italy. Glob Chang Biol. 2023;29(7):1715–28. doi: 10.1111/gcb.16615 [DOI] [PubMed] [Google Scholar]
  • 29.Carlson BS, Rotics S, Nathan R, Wikelski M, Jetz W. Individual environmental niches in mobile organisms. Nat Commun. 2021;12(1):4572. doi: 10.1038/s41467-021-24826-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Jones CG, Lawton JH, Shachak M. Organisms as Ecosystem Engineers. Ecosystem Manag. Springer New York. 1994. p. 130–47. 10.1007/978-1-4612-4018-1_14 [DOI] [Google Scholar]
  • 31.Hastings A, Byers JE, Crooks JA, Cuddington K, Jones CG, Lambrinos JG, et al. Ecosystem engineering in space and time. Ecol Lett. 2007;10(2):153–64. doi: 10.1111/j.1461-0248.2006.00997.x [DOI] [PubMed] [Google Scholar]
  • 32.Meyer ST, Neubauer M, Sayer EJ, Leal IR, Tabarelli M, Wirth R. Leaf-cutting ants as ecosystem engineers: topsoil and litter perturbations around Atta cephalotes nests reduce nutrient availability. Ecol Entomol. 2013;38:497–504. doi: 10.1111/een.12043 [DOI] [Google Scholar]
  • 33.Albertson LK, Sklar LS, Tumolo BB, Cross WF, Collins SF, Woods HA. The ghosts of ecosystem engineers: legacy effects of biogenic modifications. Functional Ecol. 2024;38:52–72. doi: 10.1111/1365-2435.14222 [DOI] [Google Scholar]
  • 34.Barrera CA, Sosa-Calvo J, Schultz TR, Rabeling C, Bacci M. Phylogenomic reconstruction reveals new insights into the evolution and biogeography of Atta leaf-cutting ants (Hymenoptera: Formicidae). Syst Entomol. 2022;47:13–35. doi: 10.1111/syen.12513 [DOI] [Google Scholar]
  • 35.Sánchez-Restrepo AF, Confalonieri VA, Calcaterra LA. Phylogenetic insights into the diversification of cutting strategies in leaf-cutting ants. Front Insect Sci. 2026;6:1778418. doi: 10.3389/finsc.2026.1778418 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36.Weber NA. Ecological Relations of Three Atta Species in Panama. Ecology. 1969;50(1):141–7. doi: 10.2307/1934676 [DOI] [Google Scholar]
  • 37.Folgarait PJ. Ant biodiversity and its relationship to ecosystem functioning: A review. Biodivers Conserv. 1998;7:1221–44. doi: 10.1023/A:1008891901953 [DOI] [Google Scholar]
  • 38.Cherrett JM. The foraging behaviour of Atta cephalotes L. (Hymenoptera, Formicidae). J Anim Ecol. 1968;37:387. doi: 10.2307/2955 [DOI] [Google Scholar]
  • 39.Wirth R, Meyer ST, Almeida WR, Araújo MV, Barbosa VS, Leal IR. Increasing densities of leaf-cutting ants (Atta spp.) with proximity to the edge in a Brazilian Atlantic forest. J Trop Ecol. 2007;23:501–5. doi: 10.1017/S0266467407004221 [DOI] [Google Scholar]
  • 40.Vieira‐Neto EHM, Vasconcelos HL. Developmental changes in factors limiting colony survival and growth of the leaf‐cutter ant Atta laevigata. Ecography. 2010;33(3):538–44. doi: 10.1111/j.1600-0587.2009.05875.x [DOI] [Google Scholar]
  • 41.Siqueira FFS, Ribeiro-Neto JD, Tabarelli M, Andersen AN, Wirth R, Leal IR. Leaf-cutting ant populations profit from human disturbances in tropical dry forest in Brazil. J Trop Ecol. 2017;33:337–44. doi: 10.1017/S0266467417000311 [DOI] [Google Scholar]
  • 42.Montoya-Lerma J, Rodríguez J, Castaño-Quintana K. Atta cephalotes (Hymenoptera: Myrmicinae) is colonizing urban areas in Cali, Colombia. Urban Ecosyst. 2023;27(3):841–54. doi: 10.1007/s11252-023-01469-y [DOI] [Google Scholar]
  • 43.Rengifo-Ruiz M, Montoya-Lerma J, Muñoz-Valencia V. Knock-down resistance to heat stress of Atta cephalotes in urban environments. Acta Oecologica. 2025;127:104076. doi: 10.1016/j.actao.2025.104076 [DOI] [Google Scholar]
  • 44.Moreira A, Forti LC, Andrade AP, Boaretto MA, Lopes J. Nest architecture of Atta laevigata (F. Smith, 1858) (Hymenoptera: Formicidae). Stud Neotrop Fauna Environ. 2004;39:109–16. doi: 10.1080/01650520412331333756 [DOI] [Google Scholar]
  • 45.Mackay WP, Mackay E. Las hormigas de Colombia: arrieras del género Atta (Hymenoptera: Formicidae). Rev Colomb Entomol. 1986;12:23–30. doi: 10.25100/socolen.v12i1.10225 [DOI] [Google Scholar]
  • 46.Pedregosa F, Varoquaux G, Gramfort A, Michel V, Thirion B, Grisel O. Scikit-learn: Machine learning in Python. J Mach Learn Res. 2011;12:2825–30. [Google Scholar]
  • 47.Virtanen P, Gommers R, Oliphant TE, Haberland M, Reddy T, Cournapeau D, et al. SciPy 1.0: fundamental algorithms for scientific computing in Python. Nat Methods. 2020;17(3):261–72. doi: 10.1038/s41592-019-0686-2 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48.Aton M, McDonald D, Cañardo Alastuey J, Azom R, Batra P, Bezshapkin V, et al. Scikit-bio: A fundamental Python library for biological omic data analysis. Nat Methods. 2026;23(2):274–6. doi: 10.1038/s41592-025-02981-z [DOI] [PubMed] [Google Scholar]
  • 49.Anderson MJ. A new method for non-parametric multivariate analysis of variance. Austral Ecol. 2001;26(1):32–46. doi: 10.1046/j.1442-9993.2001.01070.x [DOI] [Google Scholar]
  • 50.Anderson MJ. Distance-based tests for homogeneity of multivariate dispersions. Biometrics. 2006;62(1):245–53. doi: 10.1111/j.1541-0420.2005.00440.x [DOI] [PubMed] [Google Scholar]
  • 51.Jolliffe IT. Principal component analysis. 2nd ed. New York: Springer-Verlag. 2002. 10.1007/b98835 [DOI] [Google Scholar]
  • 52.Dufrêne M, Legendre P. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr. 1997;67:345–66. doi: 10.1890/0012-9615(1997)067[0345:SAAIST]2.0.CO;2 [DOI] [Google Scholar]
  • 53.De Cáceres M, Legendre P. Associations between species and groups of sites: indices and statistical inference. Ecology. 2009;90(12):3566–74. doi: 10.1890/08-1823.1 [DOI] [PubMed] [Google Scholar]
  • 54.Muñoz-Sabater J, Dutra E, Agustí-Panareda A, Albergel C, Arduini G, Balsamo G, et al. ERA5-Land: a state-of-the-art global reanalysis dataset for land applications. Earth Syst Sci Data. 2021;13(9):4349–83. doi: 10.5194/essd-13-4349-2021 [DOI] [Google Scholar]
  • 55.Costa AN, Vasconcelos HL, Vieira-Neto EHM, Bruna EM. Adaptive foraging of leaf-cutter ants to spatiotemporal changes in resource availability in Neotropical savannas. Ecol Entomol. 2019;44:227–38. doi: 10.1111/een.12697 [DOI] [Google Scholar]
  • 56.Silva PSD, Bieber AGD, Leal IR, Wirth R, Tabarelli M. Decreasing abundance of leaf-cutting ants across a chronosequence of advancing Atlantic forest regeneration. J Trop Ecol. 2009;25:223–7. doi: 10.1017/S0266467409005823 [DOI] [Google Scholar]
  • 57.Knoechelmann CM, Oliveira FMP, Siqueira FFS, Wirth R, Tabarelli M, Leal IR. Leaf‐cutting ants negatively impact the regeneration of the Caatinga dry forest across abandoned pastures. Biotropica. 2020;52(4):686–96. doi: 10.1111/btp.12782 [DOI] [Google Scholar]
  • 58.Zajícová K, Chuman T. Effect of land use on soil chemical properties after 190 years of forest to agricultural land conversion. Soil Water Res. 2019;14(3):121–31. doi: 10.17221/5/2018-swr [DOI] [Google Scholar]
  • 59.McGrath DA, Smith CK, Gholz HL, Oliveira F de A. Effects of Land-Use Change on Soil Nutrient Dynamics in Amazônia. Ecosystems. 2001;4(7):625–45. doi: 10.1007/s10021-001-0033-0 [DOI] [Google Scholar]
  • 60.Haynes RJ, Williams PH. Changes in soil solution composition and pH in urine‐affected areas of pasture. J Soil Sci. 1992;43(2):323–34. doi: 10.1111/j.1365-2389.1992.tb00140.x [DOI] [Google Scholar]
  • 61.Vazquez E, Teutscherova N, Lojka B, Arango J, Pulleman M. Pasture diversification affects soil macrofauna and soil biophysical properties in tropical (silvo)pastoral systems. Agric Ecosyst Environ. 2020;302:107083. doi: 10.1016/j.agee.2020.107083 [DOI] [Google Scholar]
  • 62.Kleineidam C, Ernst R, Roces F. Wind-induced ventilation of the giant nests of the leaf-cutting ant Atta vollenweideri. Naturwissenschaften. 2001;88(7):301–5. doi: 10.1007/s001140100235 [DOI] [PubMed] [Google Scholar]
  • 63.Bollazzi M, Forti LC, Roces F. Ventilation of the giant nests of Atta leaf-cutting ants: Does underground circulating air enter the fungus chambers?. Insect Soc. 2012;59:487–98. doi: 10.1007/s00040-012-0243-9 [DOI] [Google Scholar]
  • 64.Camargo RS, Forti LC, Nascimento DL, Oliveira NC, Zanuncio JC, Serrão JE, et al. Foundation and architecture of leaf-cutting ant nests in the genus Atta Fabricius (Hymenoptera:Formicidae). Braz J Biol. 2025;85:e295961. doi: 10.1590/1519-6984.295961 [DOI] [PubMed] [Google Scholar]
  • 65.Meyer ST, Leal IR, Tabarelli M, Wirth R. Ecosystem engineering by leaf-cutting ants: nests of Atta cephalotes drastically alter forest structure and microclimate. Ecol Entomol. 2011;36:14–24. doi: 10.1111/j.1365-2311.2010.01241.x [DOI] [Google Scholar]
  • 66.Vigueras G, Paredes-Hernández D, Revah S, Valenzuela J, Olivares-Hernández R, Le Borgne S. Growth and enzymatic activity of Leucoagaricus gongylophorus, a mutualistic fungus isolated from the leaf-cutting ant Atta mexicana, on cellulose and lignocellulosic biomass. Lett Appl Microbiol. 2017;65(2):173–81. doi: 10.1111/lam.12759 [DOI] [PubMed] [Google Scholar]
  • 67.Botts EA, Erasmus BFN, Alexander GJ. Small range size and narrow niche breadth predict range contractions in South African frogs. Global Ecol Biogeography. 2013;22:567–76. doi: 10.1111/geb.12027 [DOI] [Google Scholar]
  • 68.Forero-Chavez N, Arenas-Clavijo A, Armbrecht I, Montoya-Lerma J. Urban patches of dry forest as refuges for ants and carabid beetles in a neotropical overcrowded city. Urban Ecosyst. 2024;27(4):1263–78. doi: 10.1007/s11252-023-01504-y [DOI] [Google Scholar]
  • 69.Hu Y, Tian G, Chen Q, Xu E, Dong N. Impact of urban habitat fragmentation on habitat quality: A perspective of multi-scale grids analysis. J Environ Manage. 2026;397:128350. doi: 10.1016/j.jenvman.2025.128350 [DOI] [PubMed] [Google Scholar]
  • 70.Pouyat RV, Yesilonis ID, Russell-Anelli J, Neerchal NK. Soil chemical and physical properties that differentiate urban land‐use and cover types. Soil Science Soc Amer J. 2007;71(3):1010–9. doi: 10.2136/sssaj2006.0164 [DOI] [Google Scholar]
  • 71.Evans A, Jacquemyn H. Range size and niche breadth as predictors of climate-induced habitat change in Epipactis (Orchidaceae). Front Ecol Evol. 2022;10:894616. doi: 10.3389/fevo.2022.894616 [DOI] [Google Scholar]
  • 72.McCauley SJ, Davis CJ, Werner EE, Robeson MS 2nd. Dispersal, niche breadth and population extinction: Colonization ratios predict range size in North American dragonflies. J Anim Ecol. 2014;83(4):858–65. doi: 10.1111/1365-2656.12181 [DOI] [PubMed] [Google Scholar]
  • 73.Hausharter J, Rashid S, Wessely J, Strutzenberger P, Moser D, Gattringer A, et al. Niche breadth explains the range size of European-centred butterflies, but dispersal ability does not. Glob Ecol Biogeogr. 2023;32(9):1535–48. doi: 10.1111/geb.13717 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 74.Elizalde L, Superina M. Complementary effects of different predators of leaf-cutting ants: Implications for biological control. Biol Control. 2019;128:111–7. doi: 10.1016/j.biocontrol.2018.09.015 [DOI] [Google Scholar]
  • 75.Masiulionis VE, Samuels RI. Investigating the Biology of Leaf-Cutting Ants to Support the Development of Alternative Methods for the Control and Management of These Agricultural Pests. Agriculture. 2025;15(6):642. doi: 10.3390/agriculture15060642 [DOI] [Google Scholar]
  • 76.Aguilera O, Katz E, Césard N. Las hormigas culonas: entre patrimonio biocultural y plaga (Santander, Colombia). Nat Soc: Desafíos Medioambient. 2024;(8):104–25. doi: 10.53010/ycmp4466 [DOI] [Google Scholar]
  • 77.Baer B, Boomsma JJ. Mating biology of the leaf-cutting ants Atta colombica and A. cephalotes. J Morphol. 2006;267(10):1165–71. doi: 10.1002/jmor.10467 [DOI] [PubMed] [Google Scholar]
  • 78.Moser JC, Reeve JD, Bento JMS, Della Lucia TMC, Cameron RS, Heck NM. Eye size and behaviour of day- and night-flying leafcutting ant alates. J Zool. 2004;264:69–75. doi: 10.1017/S0952836904005527 [DOI] [Google Scholar]
  • 79.Fabian ST, Sondhi Y, Allen PE, Theobald JC, Lin H-T. Why flying insects gather at artificial light. Nat Commun. 2024;15(1):689. doi: 10.1038/s41467-024-44785-3 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 80.van Koppenhagen N, Gossner MM, Haller J, Bolliger J. Mitigating light pollution impacts on arthropods based on light-emitting diode properties. Conserv Biol. 2026;40(1):e70137. doi: 10.1111/cobi.70137 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 81.Longcore T, Rich C. Ecological light pollution. Front Ecol Environ. 2004;2:191–8. doi: 10.1890/1540-9295(2004)002[0191:ELP]2.0.CO;2 [DOI] [Google Scholar]
  • 82.Fernandez-Bou AS, Dierick D, Swanson AC, Allen MF, Alvarado AGF, Artavia-León A. The role of the ecosystem engineer, the leaf-cutter ant Atta cephalotes, on soil CO2 dynamics in a wet tropical rainforest. J Geophys Res Biogeosci. 2019;124:260–73. doi: 10.1029/2018JG004723 [DOI] [Google Scholar]

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This paper shows clear evidence of extensive use of artificial intelligence in most (if not all) sections and steps of the write-up. Yet there is no indication of anywhere that the authors have made any declarations of the same. Use of AI in any aspect of the paper must be explicitly declared, with details of what sections and procedures it was subjected to, and which ones in in which it was not. Otherwise the presentation is considered plagiarized as it was not the work of the authors and therefore will have to be rejected without any further consideration.

The journal’s policy on the use of AI is clearly presented in the Submission Guidelines (see https://journals.plos.org/plosone/s/ethical-publishing-practice

especially the section on Publication Ethics), which states in part as follows: “…Contributions by artificial intelligence (AI) tools and technologies to a study or to an article’s contents must be clearly reported in a dedicated section of the Methods, or in the Acknowledgements section for article types lacking a Methods section. This section should include the name(s) of any tools used, a description of how the authors used the tool(s) and evaluated the validity of the tool’s outputs, and a clear statement of which aspects of the study, article contents, data, or supporting files were affected/generated by AI tool usage….

“…The use of AI tools and technologies to fabricate or otherwise misrepresent primary research data is unacceptable.

Noncompliance with any aspect of this policy will be considered misrepresentation of methods, contributions, and/or results.  If concerns arise about noncompliance with this policy, PLOS may notify the authors’ institution(s) and the journal may reject (pre-publication), retract (post-publication), or publish an editorial notice on the article...”

In revising the article, the authors should, in addition to their declaration on AI use, re-write the paper in a structure and format that strictly complies with the journal’s guidelines, ensuring that AI use does not constitute or contribute to more than 30% of actual human input. The journal has elaborate mechanisms for detecting these contributions.

The reviewers laud the importance of the research topic and general structuring of the research, the framing of the research questions and overall analytical framework, although one reviewer was particularly concerned about certain aspects of interpretation of the results, For instance, the authors need to clearly justify in Introduction section why plasticity and specialization were considered as mutually exclusive and opposite strategies by the two ant species/groups, especially given that specialist may at times also adopt plasticity tendencies depending on prevailing environmental/habitat conditions. In particular, a robust theoretical framework must be provided in the literature review (Introduction) and in the Methods to demonstrate the extent to which plasticity and specialization may be regarded as being mutually exclusive and opposite to each other with regards to the current study scenario and the taxa involved. If there is no justification for such exclusivity, consider using the term ‘generalist’ instead of ‘plasticity’, which should therefore be toned down throughout the Discussion and conclusion.

Can the authors justify why many elements of Results (including Figure/Figure captions) are presented in Methods?

There is almost no literature cited to accompany the analysis steps outlined in Methods. To ensure reproducibility, which is a requirement for all research, each analysis step must be supported with details of corresponding analysis tool used, software version and cited literature, unless the techniques are the authors’ original ideas

For the case of PERMANOVA, it must also be clarified whether the Euclidean distances that formed the basis of analysis (niche breadth estimation), were in references to matrices of abundance or presence-absence and also whether these Euclidean distances were analyses in terms of similarity or dissimilarity while being permutated

The authors need to present (directly in the text body rather than supplementary material), many more results in terms of illustration such as tables and graphs/plots, especially from analyses involving PERMANOVA. PERMANOVA results are best presented in full within a table rather than in-text, including details of the F statistic, effect sizes, permutation p, the actual p and degrees of freedom plus the relative percent contributions of each predictor variable

There is need for a small separate Conclusion section summarizing the extent to which the hypotheses were proved or otherwise

In terms of cited literature, the depth of literature review appears a bit shallow for a research theme (niche breadth assessment) which has seen very vigorous research across the world over the past 6 years. With a total of only 51 references, and majority of them more than 15 years old, the authors need to review more recent literature to provide a more robust case for their contribution to the subject, and to more clearly justify a research gap and novelty

There are many more specific issues raised by the reviewers and the authors need to address each of these point by point in their Major revision, and submit a separate account of how this has been accomplished, besides a clean and a track-changed version of the manuscript.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

Reviewer #1: Yes

Reviewer #2: Partly

Reviewer #3: Yes

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2. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

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Reviewer #1: I am not aware of any competing interests that could have influenced my assessment of this manuscript. I have no personal, professional, or financial relationship with the author.

For the Editor's convenience, I have copied below the same comments that were provided to the author.

Thank you to the author for this interesting manuscript and to the Editor for inviting me to review it. I am not an animal ecologist by training, but I accepted this review out of curiosity, to see whether responses to environmental characteristics and resource-use strategies are similar to those observed in the plant world.

The manuscript is very well structured and clearly written. It is easy to read, and the key aspects of the study system, methods, analyses, and results are presented in a clear and understandable manner.

A few minor comments and suggestions:

Line 107: replace “(Cherrett, 1968; Wirth et al., 2007)” with “[33, 36]”.

Lines 161–162: I would suggest a slight rephrasing. Instead of:

“Specifically, ten locations were sampled in the rural area of the municipality of Charalá, one in Ocamonte, and one in Barichara (S1 Table, Fig 1C).”

perhaps:

“Specifically, 12 locations were sampled: 10 in the rural area of the municipality of Charalá, 1 in Ocamonte, and 1 in Barichara (S1 Table, Fig 1C).”

Line 176: where it states “Only active colonies were included in the study,” as a reader I initially expected that all colonies would have been surveyed. Including inactive nests could potentially have strengthened the hypothesis that one species is more sensitive than the other to certain environmental changes. However, I realize that abandoned nests may be difficult to locate and identify reliably.

One final question concerns the climatic data. Temperature data were collected for the month of February across three years (2024, 2025, and 2026), whereas precipitation data were considered only for 2025, covering all months of the year. This does not affect the readability of the manuscript, and I do not believe it is likely to alter the conclusions substantially. Nevertheless, the question naturally arises from the standpoint of data consistency and comparability.

The study aimed to test the hypothesis that Atta cephalotes is more of a habitat specialist, whereas Atta laevigata behaves as a more plastic and resilient species. The statistical analysis of niche breadth (defined as the suite of environments and resources across both abiotic and biotic axes that a species can tolerate and utilize) identified four key parameters characterizing the ecology of the two species: canopy openness, association with macro-vegetation types, surface and nest temperatures, and soil pH in the broader area surrounding the main nest entrance.

Initially, I thought that the observed difference of approximately 0.2 pH units between the soils associated with the two species, although statistically significant, was unlikely to be ecologically important. My own expertise lies in humus form classification, and I know that within soil categories inhabited by the same major animal groups, pH can vary by several units. There are, however, threshold values; for example, earthworms generally disappear below pH 4.5 in European soils. After reading the authors’ discussion (lines 466–496), I am persuaded that soil pH, when linked to vegetation changes and their consequences for fungal communities, could indeed influence the ecology of these ants.

Overall, the interpretation proposed by the authors is consistent with the analytical results and appears well supported. The manuscript presents an interesting example of how two ant species that coexist at broad spatial scales by exploiting different local microhabitats may become segregated when those microhabitats are incorporated into distinct human-modified environments.

My own work on habitat differentiation has focused on soil microorganisms. These can be sampled relatively easily (a few cubic centimeters of soil) and analyzed at moderate cost; for roughly €100 per sample, one can obtain information on archaeal, fungal, and bacterial communities, both active and inactive. I suspect that microbial communities would differ substantially between the habitats occupied by the two ant species studied here.

I have no further comments. I thank the author for this interesting contribution and look forward to future developments in this area of research.

Reviewer #2: My main conceptual concern is that the ms frames plasticity and specialization as opposing ecological strategies, but this dichotomy is not fully justified. Phenotypic or behavioral plasticity can itself be one of the mechanisms allowing niche specialization, for example by enabling organisms to maintain performance within a narrow set of environmental conditions through flexible behavioral, physiological, or architectural adjustments. Therefore, a narrow niche breadth does not necessarily imply low plasticity. In the current study, niche breadth is inferred from among-colony dispersion in environmental and architectural variables. However, this represents the realized environmental variation occupied by each species, rather than a direct measure of plasticity. Demonstrating plasticity would require evidence of within-species or within-colony responses across environmental gradients, temporal changes, reaction norms, experimental manipulation, or, at minimum, a clearer separation between individual- or population-level plastic responses and species-level habitat associations. For this reason, I suggest that the authors soften claims regarding plasticity unless they provide direct evidence of plastic responses. More importantly, the theoretical framework should be revised so that plasticity is not treated as the opposite of specialization, but rather as a potential mechanism that may either broaden niche breadth or help maintain performance within a specialized niche.

Reviewer #3: I found your hypothesis contrasting, require more explanation (i) at the abstract you wrote "two competing hypotheses: first, the Specialist Filter, which posits that A. laevigata exhibits a narrow niche breadth and high fidelity for open grasslands, restricting its success to stable, large-scale pasture matrices; and second, the Plastic Survivor, which predicts that A. cephalotes displays significantly higher environmental (ii) then at the introduction you stated "We tested the contrasting hypotheses of A. cephalotes acting as a habitat

specialist and A. laevigata as a plastic survivor."

Another points: there are very short about "their potentials predators": you should develop a bit what you wrote in the discussion: something like the potelial role of predator in such ecososytem changes regarding thes species, for instance give existing example, if there are, about which ones are their natural predators in nature, are they able to survive as well with the ecosystem change based on published information" - if no manuscript exists on that subject, please mentioned it but not only wrote like you did on predator subject. I stress that point as in various taxa, the exposition within land modified expose them to different threars among them are paredators. It might as well new predators" whiar are not their natural ones but can prey on them as they live in open land, etc. So if you have some information on potential ants predators in open land, are we sure they won't prey on them?

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Reviewer #1: Yes:  Augusto ZANELLA

Reviewer #2: No

Reviewer #3: No

**********

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PLoS One. 2026 Oct 1;21(10):e0351518. doi: 10.1371/journal.pone.0351518.r002

Author response to Decision Letter 1


9 Sep 2026

Dear Academic Editor,

Please find below the responses to each point of the first revision round of our manuscript, "Generalism vs. specialization: Does niche breadth influence species responses to anthropogenic land-use change in Neotropical leaf-cutter ants?" (Manuscript ID: PONE-D-26-26201). We found the comments from the Editor and Reviewers extremely helpful in improving the quality of our manuscript, and we would like to take this opportunity to express our sincere gratitude.

Summary of changes:

First, after considering the reviewers’ comments, we revised the title of the manuscript to better reflect the scope and main focus of the study.

Former title: Does niche breadth predict resilience to anthropogenic land-use change in ecosystem engineers?

New title: Generalism vs. specialization: Does niche breadth influence species responses to anthropogenic land-use change in Neotropical leaf-cutter ants?

One major point that required attention was the conceptual framework of the study, which in the previous version relied on plasticity versus specialization. Following the valuable comments from the Editor and Reviewer 2, we carefully reconsidered this framework and concluded that the concept of plasticity did not accurately reflect either the purpose of the study or the evidence generated by our analyses. We therefore adopted a generalist versus specialist framework. Accordingly, we reformulated our hypotheses and expanded the literature review to better represent the current state of research on niche breadth, also addressing the Editor's concern regarding the limited coverage of recent literature. This revision also resolved Reviewer 3's concern regarding the former Plastic Survivor versus Specialist Filter hypotheses.

As correctly pointed out by the Editor, in the former version of the manuscript many of the principal statistical results were embedded in the text, while the corresponding table was placed in the Supplementary Information. We therefore moved the former S4 Table to the main manuscript as Table 1 and refined the Results section to improve clarity and avoid unnecessary repetition. Likewise, we carefully revised the manuscript to ensure that results were presented only in the Results section and that interpretation remained within the Discussion.

In S3 Fig, we added four additional panels showing total annual precipitation (m) and total annual evaporation (mm) for both 2024 and 2026. This addition addresses Reviewer 1's concern regarding the consistency and comparability of the climatic data presented in the manuscript.

Reviewer 3 suggested expanding the Discussion to consider the potential role of predation. We therefore incorporated a dedicated paragraph discussing the natural predators of Atta species described in the literature, as well as the traditional harvesting of A. laevigata for human consumption in the Santander region of Colombia. We emphasize that the potential contribution of predation and harvesting to the contrasting responses of both species to land-use change remains unknown and deserves further investigation.

In addition to substantially expanding the literature review with recent publications (2020–2026) on niche breadth, anthropogenic environmental filters, and land-use change, we also incorporated appropriate citations for the Python libraries and statistical approaches used throughout the study, following the Editor's recommendations.

The Editor also emphasized the need to substantially rewrite the manuscript to minimize AI-generated text. We carefully revised the entire manuscript and extensively rewrote numerous sections. We sincerely apologize for our oversight in the original submission. We also clarified the way AI-assisted tools were used and incorporated a dedicated AI Declaration within the Materials and Methods section.

The editorial office also requested clarification regarding permissions for access to the sampling sites. Accordingly, we added a dedicated statement to the Materials and Methods (Lines 176–185). Most sampling was conducted in publicly accessible areas intersected by public roads and footpaths, where no access permits were required. For colonies located on privately owned properties (including Choro Bajo, Morario, Grima Baja, El Raizal, and Montefrío), permission to access the sites was obtained from the respective landowners or property managers, several of whom accompanied the fieldwork. Because no biological specimens were collected for scientific purposes and all ecological measurements were performed in situ, no scientific collecting permit was required.

Figure 1A–B: To address the copyright and image-source clarification, panels A and B of Figure 1 have been replaced with cropped versions of the original photographs taken by the author. The original millimeter-grid paper background is now visible in both panels. Only cropping was applied for composition; no other image editing or processing was performed. The author is the original copyright holder of these images. We deposited the original image files (.jpg) in the GitHub repository of the project, associated to a Zenodo DOI, which is described in the “Data availability” statement.

We deposited the complete source code used in this study in Zenodo, together with the ground-level photographs of the nests and the hemispherical photographs used for canopy analyses. Consequently, we added a Data Availability Statement (Line 705).

Finally, we addressed the Editor's request regarding permission to use the OpenTopoMap layers previously displayed in Fig 1 and S3 Fig, as well as in the newly added S4 and S5 Figs. We removed the OpenTopoMap relief layer and replaced it with an OpenStreetMap basemap, which is distributed under a license compatible with PLOS ONE's requirements. The corresponding attribution to OpenStreetMap contributors is now provided in the figure legends.

Author affiliation: Since the initial submission, the author affiliation has been updated from “Independent Researcher” to “Institute of Science and Technology Austria (ISTA), Klosterneuburg, Austria.” Although this study was conducted independently and outside the scope of my former employment at ISTA, the Institute has explicitly authorized the use of the ISTA affiliation for this publication.

Editor

This paper shows clear evidence of extensive use of artificial intelligence in most (if not all) sections and steps of the write-up. Yet there is no indication of anywhere that the authors have made any declarations of the same. Use of AI in any aspect of the paper must be explicitly declared, with details of what sections and procedures it was subjected to, and which ones in in which it was not. Otherwise the presentation is considered plagiarized as it was not the work of the authors and therefore will have to be rejected without any further consideration.

Response: Thanks for pointing out the missing AI-declaration statement. We added in the Materials and methods section a new subsection called Use of AI-assisted technologies (Line 328) where we explicitly declare and describe the use of AI tools during manuscript preparation. The revised manuscript now specifies that we used AI exclusively for language editing and limited programming assistance, while all hypotheses, study design, field data collection, statistical analyses, interpretations, and conclusions were developed and verified entirely by the authors.

In revising the article, the authors should, in addition to their declaration on AI use, re-write the paper in a structure and format that strictly complies with the journal’s guidelines, ensuring that AI use does not constitute or contribute to more than 30% of actual human input. The journal has elaborate mechanisms for detecting these contributions.

Response: We appreciate the Editor’s concern regarding the use of AI-assisted writing. In addition to including an explicit AI-use declaration in the Materials and Methods section (Line 328), we thoroughly revised the entire manuscript to ensure full compliance with the journal’s guidelines. We critically re-examined all sections of the manuscript and rewrote substantial part of the text where necessary to ensure that the final wording accurately reflects our original scientific ideas, interpretations, and intended meaning.

The reviewers laud the importance of the research topic and general structuring of the research, the framing of the research questions and overall analytical framework, although one reviewer was particularly concerned about certain aspects of interpretation of the results, For instance, the authors need to clearly justify in Introduction section why plasticity and specialization were considered as mutually exclusive and opposite strategies by the two ant species/groups, especially given that specialist may at times also adopt plasticity tendencies depending on prevailing environmental/habitat conditions. In particular, a robust theoretical framework must be provided in the literature review (Introduction) and in the Methods to demonstrate the extent to which plasticity and specialization may be regarded as being mutually exclusive and opposite to each other with regards to the current study scenario and the taxa involved. If there is no justification for such exclusivity, consider using the term ‘generalist’ instead of ‘plasticity’, which should therefore be toned down throughout the Discussion and conclusion.

Response: We thank the Editor and Reviewer 2 for this important conceptual observation. We carefully reconsidered the theoretical framework of our study and agree that the term plasticity did not accurately reflect either our hypotheses or the evidence generated by our analyses. Accordingly, we substantially revised the manuscript by replacing the former plasticity versus specialization framework with a more appropriate generalist versus specialist framework, which is better supported by the ecological literature on niche breadth.

Throughout the manuscript (e.g. Lines 25, 64–66, 487–491), we now interpret the broader realized niche of A. cephalotes as being consistent with a more generalist ecological strategy, whereas the narrower realized niche of A. laevigata is discussed as being consistent with a more specialist strategy. We also moderated our interpretations and conclusions by emphasizing that our analyses quantify only realized niche breadth across the environmental variables included in this study, rather than directly demonstrating generalist or specialist strategies.

Can the authors justify why many elements of Results (including Figure/Figure captions) are presented in Methods?

Response: We thank the Editor for this important observation. We carefully restructured the manuscript to ensure a clear separation between the Introduction, Materials and Methods, Results, and Discussion, following the journal's recommendations. In the revised version, methodological descriptions are now strictly limited to the procedures used in the study. All observations, statistical outcomes, and interpretations were moved to the Results and Discussion sections. We also revised all figure titles and captions to ensure that they are descriptive rather than interpretative.

Specifically, we implemented the following changes:

Introduction

We removed from the paragraph Lines 124-141 the part were we explicitly had said that mound architecture was “a proxy for behavioral plasticity”.

The hypotheses were reformulated to avoid implying expected results (e.g., replacing the previous "Plastic Survivor" and "Specialist Filter"). Instead of assuming that A. cephalotes possesses a broader niche, we now explicitly state that we tested whether differences in realized niche breadth are associated with contrasting persistence in human-modified landscapes (Lines 135-138).

Materials and Methods

Statements implying causal outcomes (e.g. "ensuring the strict independence..." of the colonies ) were replaced by more appropriate methodological wording ("minimized the likelihood..." for territorial overlapping ) in line 158.

We expanded descriptions of statistical analyses (Lines 249-271) to explain the analytical workflow (distance matrices, standardization, permutations, PERMDISP, and R2 effect size calculations).

The regional climate section was revised to remove interpretative statements such as correlating colony occurrence with climatic gradients (Lines 323-327). This way, we limited this section to process and visualize ERA5-Land data.

Results

The Results section was reorganized into thematic subsections with descriptive titles reflecting the principal findings.

Figures and figure captions

Figure titles were rewritten to be descriptive (e.g. Fig 2. Fine-scale realized niche characterization and habitat affinity instead of Fig 2. Multivariate niche partitioning and habitat affinity).

Figure captions were revised to describe only what is displayed, removing interpretative statements that could be considered part of the Results or Discussion. In particular, in Fig 2, we removed the expression “Note the significant niche contraction in canopy openness and soil pH for A. laevigata contrasted with the architectural specialization (compact mound area) of A. cephalotes”.

Discussion

We expanded the Discussion with recent literature on realized niche breadth and land-use change across multiple taxa, allowing our findings to be interpreted within a broader ecological context (Lines 584-590).

There is almost no literature cited to accompany the analysis steps outlined in Methods. To ensure reproducibility, which is a requirement for all research, each analysis step must be supported with details of corresponding analysis tool used, software version and cited literature, unless the techniques are the authors’ original ideas.

Response: We expanded the Materials and Methods to improve the reproducibility of all analytical procedures as requested. In the revised manuscript, each analytical step is now accompanied by a detailed description of the workflow, the corresponding software or Python library (including version numbers), and the relevant methodological references whenever applicable.

Specifically, we implemented the following changes:

We now report the versions of all principal Python libraries used in the analyses, including scikit-learn, SciPy, scikit-bio, and cdsapi, together with the corresponding citations.

The statistical analyses were expanded to describe the analytical workflow. For example, we now specify the use of z-score standardization, the construction of Euclidean distance matrices of dissimilarity, the implementation of PERMANOVA and PERMDISP, the number of permutations (999), grouping variables, and software implementations used in each analysis (Lines 249-271).

We incorporated the original methodological references supporting the statistical procedures, including Anderson (2001) for PERMANOVA and Anderson (2006) for PERMDISP.

Because the Python implementation of PERMANOVA does not report effect sizes, we explicitly describe how we derived R² values algebraically from the pseudo-F statistic, including the corresponding equation and justification for its use.

For the PCA (Lines 272-282) and Indicator Value (IndVal; Lines 283-290) we also included the software libraries that we used as well as the statistical frameworks: PCA according to Jolliffe (2002) and IndVal following Dufrêne & Legendre (1997) and De Cáceres & Legendre (2009).

The authors need to present (directly in the text body rather than supplementary material), many more results in terms of illustration such as tables and graphs/plots, especially from analyses involving PERMANOVA. PERMANOVA results are best presented in full within a table rather than in-text, including details of the F statistic, effect sizes, permutation p, the actual p and degrees of freedom plus the relative percent contributions of each predictor variable.

Response: We thank the Editor for this valuable suggestion. We revised the presentation of the multivariate statistical results to improve their accessibility and comply with the journal's recommendations as follows:

The complete PERMANOVA and PERMDISP results, previously presented only in the Supplementary Information (former S4 Table), were moved to the main manuscript and are now presented as Table 1 (Line 369).

Table 1 now reports the principal PERMANOVA and PERMDISP results for each environmental variable, including species means, standard deviations, pseudo-F statistics, R² effect sizes, permutation-based p-values, and PERMDISP significance tests. Because all analyses consisted of independent one-factor PERMANOVAs comparing the same two species (N = 114), the numerator and denominator degrees of freedom were identical across variables and therefore were not repeated in the table.

The relative contributions of individual environmental variables to multivariate niche differentiation are presented separately through the PCA loading vectors and eigenvector analysis (Fig. 2A; S5 Table), which complement the PERMANOVA results by identifying the principal environmental gradients underlying species separation.

Following this reorganization, all elements of the Supplementary Information were renumbered accordingly throughout the manuscript.

Because the complete statistical results are now available in Table 1, we revised the Results subsection "Realized niche characterization reveals fine-scale ecological differences between sympatric Atta species" to avoid unnecessary repetition of the numerical values already presented in the table. The text now focuses on describing the principal ecological patterns, while Table 1 provides the detailed statistical outputs.

These modifications improve the presentation of the multivariate analyses and make the principal statistical results immediately available in the main text, as recommended.

There is need for a small separate Conclusion section summarizing the extent to which the hypotheses were proved or otherwise.

Response: Following the Editor's recommendation, we added a separate Conclusion section at the end of the main text (Line 688).

In terms of cited literature, the depth of literature review appears a bit shallow for a research theme (niche breadth assessment) which has seen very vigorous research across the world over the past 6 years. With a total of only 51 references, and majority of them more than 15 years old, the authors need to review more recent literature to provide a more robust case for their contribution to the subject, and to more clearly justify a research gap and novelty.

Response: We thank the Editor for highlighting this opportunity to strengthen the literature review. We expanded both the Introduction and Discussion by incorporating more than a dozen recent publications (2020–2026) addressing niche breadth, ecological specialization, environmental filtering, and species persistence under land-use change. With these additions we strengthen the theoretical framework, better justify the research gap, and place our findings within the context of recent advances in the field.

Specifically, we incorporated studies on the role of land-use change as an ecological filter (e.g. Boyle et al., 2021; Winkler et al., 2021; Lines 41-45) and the contrasting responses of ecological "winners" and "losers" in this context (Filgueiras et al., 2021; Lines 48-51, 67-70). We also updated the conceptual framework of niche breadth together with modern perspectives on specialization and niche dimensionality (Carscadden et al., 2020; Di Cecco & Hurlbert, 2022; Lines 61-70).

To better support the relationship between niche breadth and species persistence, we added recent empirical studies demonstrating that species with narrower niches are generally more vulnerable to land-use change (Wehner et al., 2021; Lines 67-70). We further incorporated studies and reviews referring to specific taxa, including butterflies (Riva et al., 2023; Lines 76-79, 584-587), birds (Liordos et al., 2021; Avidad et al., 2025; Lines 72-74), insects (Waldock et al., 2020; Lines 74-76), and amphibians (Kearney et al., 2025; Lines 74-76), which collectively show that broader environmental niches are associated with greater persistence in human-modified landscapes.

These additions also helped us refine the research gap. In Lines 79-85 and 584-590 we now explain that many previous studies infer niche breadth from broad geographic distributions, species occurrence records, or coarse habitat categories rather than from direct measurements of fine-scale environmental conditions. Therefore, our research complement previous large-scale studies by demonstrating that fine-scale measurements of realized niche breadth are likewise consistent with the greater persistence of species exhibiting broader realized niches in human-modified landscapes.

The reference list increased from 51 to 82 citations (including citations to the main python libraries and statistical approaches), with the majority of the newly incorporated references in the context of niche-breadth and land-use change published between 2020 and 2026.

There are many more specific issues raised by the reviewers and the authors need to address each of these point by point in their Major revision, and submit a separate account of how this has been accomplished, besides a clean and a track-changed version of the manuscript.

Reviewer 1

Thank you to the author for this interesting manuscript and to the Editor for inviting me to review it. I am not an animal ecologist by training, but I accepted this review out of curiosity, to see whether responses to environmental characteristics and resource-use strategies are similar to those observed in the plant world. The manuscript is very well structured and clearly written. It is easy to read, and the key aspects of the study system, methods, analyses, and results are presented in a clear and understandable manner.

Response: We sincerely thank the Reviewer for the careful review of our manuscript and for the positive assessment of its structure, clarity, and readability. We are grateful for the constructive comments and suggestions, which have helped us strengthen both the conceptual framework and the presentation of our study.

A few minor comments and suggestions:

Line 107: replace “(Cherrett, 1968; Wirth et al., 2007)” with “[33, 36]”.

Response: Thanks for the observation, we corrected such inconsistencies in the citation style (Line 96).

Lines 161–162: I would suggest a slight rephrasing. Instead of: “Specifically, ten locations were sampled in the rural area of the municipality of Charalá, one in Ocamonte, and one in Barichara (S1 Table, Fig 1C).” perhaps: “Specifically, 12 locations were sampled: 10 in the rural area of the municipality of Charalá, 1 in Ocamonte, and 1 in Barichara (S1 Table, Fig 1C).”

Response: We agreed with the proposed rephrasing (Lines 147-149).

Line 176: where it states “Only active colonies were included in the study,” as a reader I initially expected that all colonies would have been surveyed. Including inactive nests could potentially have strengthened the hypothesis that one species is more sensitive than the other to certain environmental changes. However, I realize that abandoned nests may be difficult to locate and identify reliably.

Response: We thank the Reviewer for this thoughtful observation. As correctly inferred, we deliberately restricted our sampling to active colonies because species identification based on nest characteristics alone would be unreliable once colonies have been abandoned. In addition, colony inactivity may result from multiple causes unrelated to natural environmental conditions, including disease, colony aging, or human intervention (e.g., insecticide application), making the ecological interpretation of abandoned nests difficult. Nevertheless, we agree with the Reviewer that incorporating inactive colonies into future studies, where the causes of colony abandonment can be reliably determined, could provide valuable insights into Atta persistence under land-use change.

One final question concerns the climatic data. Temperature data were collected for the month of February across three years (2024, 2025, and 2026), whereas precipitation data were considered only for 2025, covering all months of the year. This does not affect the readability of the manuscript, and I do not believe it is likely to alter the conclusions substantially. Nevertheless, the question naturally arises from the standpoint of data consistency and comparability.

Response: We thank the Reviewer for this helpful observation. To improve data consistency and comparability across years, we expanded the former S3 Fig into three separate figures (S3–S5 Figs), each dedicated to a different climatic variable. S3 Fig now presents the average February temperature for 2024, 2025, and 2026. S4 and S5 Figs present total annual precipitation and total annual bare-soil evaporation, respectively, for 2024 and 2025. In addition, panel C of S4 and S5 Figs presents cumulative precipitation and bare-soil evaporation from January to July 2026. We explicitly indicate that these 2026 values represent partial-year accumulations because the year was still in progress at the time of analysis both in the figure captions but also in the Materials and Methods (Lines 306-322). We also refined the macroclimatic values reported in the Results (Lines 462-478) by extracting the corresponding ERA5-Land values directly for the sampling localities, providing a more precise quantitative description of the regional climatic gradient represented in S3–S5 Figs. These additions provide a more consistent climatic context across the three years without altering the interpretation of our results. The new Supporting Information figures are now cited in the main text (Lines 465, 475 and 625).

The study aimed to test the hypothesis that Atta cephalotes is more of a habitat specialist, whereas Atta laevigata behaves as a more plastic and resilient species. The statistical analysis of niche breadth (defined as the suite of environments and resources across both abiotic and biotic axes that a species can tolerate and utilize) identified four key parameters characterizing the ecology of the two species: canopy openness, association with macro-vegetation types, surface and nest temperatures, and soil pH in the broader area surrounding the main nest entrance.

Initially, I thought that the observed difference of approximately 0.2 pH units between the soils associated with the two species, although statistically significant, was unlikely to be ecologically important. My own expertise lies in humus form classification, and I know that within soil categories inhabited by the same major animal groups, pH can vary by several units. There are, however, threshold values; for example, earthworms generally disappear below pH 4.5 in European soils. After reading the authors’ discussion (lines 466–496), I am persuaded that soil pH, when linked to vegetation changes and their consequences for fungal communities, could indeed influence the ecology of these ants.

Response: Thanks to the Reviewer for this thoughtful comment and are pleased that the Discussion clarified the ecological relevance of the observed soil pH differences despite their relatively small absolute magnitude. We agree that the interpretation should be considered within the broader context of vegetation structure, fungal communities, and the ecology of the ant–fungus symbiosis. No changes to the manuscript were considered necessary.

Overall, the interpretation proposed by the authors is consistent with the analytical results and appears well supported. The manuscript presents an interesting example of how two ant species that coexist at broad spatial scales by exploiting different local microhabitats may become segregated when those microhabitats are incorporated into distinct human-modified environments.

My own work on habitat differentiation has focused on soil microorganisms. These can be sampled relatively easily (a few cubic centimeters of soil) and analyzed at moderate cost; for roughly €100 per sample, one can obtain information on archaeal, fungal, and bacterial communities, both active and inactive. I suspect that microbial communities would differ substantially between the habitats occupied by the two ant species studied here.

Response: We fully agree that characterizing the microbial communities associated with the different habitats occupied by A. cephalotes and A. laevigata represents a highly promising direction for future research. As the Reviewer points out, differences in archaeal, bacterial, and fungal communities may contribute to the contrasting ecological strategies documented in this study. We have therefore emphasized on the final paragraph of the Discussion that understanding the mechanisms underlying differences in realized niche breadth will require moving beyond the ant alone and considering the broader biological system, including its obligate fungal symbiont. In future work, we also aim to investigate the genomic and transcriptomic responses of both the ants and Leucoagaricus gongylophorus across contrasting environmental conditions to better understand the mechanisms underlying differences in realized niche breadth and persistence under land-use change.

I have no further comments. I thank the author for this interesting contribution and look forward to future developments in this area of research.

Reviewer 2

My main conceptual concern is that the ms frames plasticity and specialization as opposing ecological strategies, but this dichotomy is not fully justified. Phenotypic or behavioral plasticity can itself be one of the mechanisms allowing niche specialization, for example by enabling organisms to maintain performance within a narrow set of environmental conditions through flexible behavioral, physiological, or architectural adjustments. Therefore, a narrow niche breadth does not necessarily imply low plasticity. In the current study, niche breadth is inferred from among-colony dispersion in environmental and architectural variables. However, this represents the realized environmental variation occupied by each species, rather than a direct measure of plasticity. Demonstrating plasticity would require evidence of within-species or within-colony responses across environmental gradients, temporal changes, reaction norms, experimental manipulation, or, at minimum, a clearer separation between individual- or population-level plastic responses and species-level habitat associations. For this reason, I suggest that the authors soften claims regarding plasticity unless they provide direct evidence of plastic responses. More importantly, the theoretical framework should be revised so that plasticity is not treated as the opposite of specialization, but rather as a potential mechanism that may either broaden niche breadth or help maintain performance within a specialized niche.

Response: We sincerely thank the Reviewer for this conceptual observation crucial for our entire study. We carefully reconsidered the theoretical framework that we proposed and fully agree that plasticity (either phenotypic or behavioural) and ecological specialization should not be presented as mutually exclusive or opposing strategies. As the Reviewer correctly points out, specialist species may also exhibit plastic behavioural or physiological responses while remaining restricted to a relatively narrow realized niche.

After revising both our hypotheses and the literature, we concluded that the term plasticity did not accurately describe either the questions addressed in this study or the evidence generated by our analyses. Our data quantify differences in realized niche breadth across fine-scale environmental gradients, rather than phenotypic or behavioural plasticity.

We moderated our interpretations throughout the Discussion and Conclusions. Rather than presenting realized niche breadth as direct evidence that either species is a generalist or a specialist, we now emphasize that our analyses quantify only the realized niche represented by the environmental variables included in this study. Therefore, we present our conclusions in terms of whether the observed differences in realized niche breadth are consistent with generalist or specialist ecological strategies, rather than demonstrating these strategies directly.

Accordingly, we revised the manuscript to replace the former plasticity versus specialization framework with a more appropriate generalist versus specialist framework, which is better supported by the niche-breadth literature. Throughout the manuscript (e.g. Lines 25, 64–66, 487–490), we now interpret the broader realized niche of A. cephalotes as being consistent with a more generalist ecological strategy, whereas the narrower realized niche of A. laevigata is discussed as being consistent with a more specialist strategy.

We believe these revisions have substantially strengthened the conceptual framework of the manuscript, and we thank the Reviewer for helping us improve this aspect of the study.

Reviewer 3

I found your hypothesis contrasting, require more explanation (i) at the abstract you wrote "two competing hypotheses: first, the Specialist Filter, which posits that A. laevigata exhibits a narrow niche breadth and high fidelity for open grasslands, restricting its success to stable, large-scale pasture matrices; and second, the Plastic Survivor, which predicts that A. cephalotes displays significantly higher environmental (ii) then at the introduction you stated "We tested the contrasting hypotheses of A. cephalotes acting as a habitat specialist and A. laevigata as a plastic survivor."

Response: We sincerely thank the Reviewer for this observation. We agree that the original way we formulated our hypotheses required clearer conceptual justification. After reconsidering the theoretical framework of the study, we concluded that the former terminology of "plastic survivor versus specialist filter" did not accurately reflect either our hypotheses or the evidence generated by our analyses. Therefore, we completely revised the conceptual framework throughout the manuscript. We replaced the former plasticity-based terminology with a generalist versus specialist framework, which is more appropriate for interpreting differences in realized niche breadth and is better supported by the current ecological literature. The Abstract (Lines 22-25), Introduction (Lines 64-66, 71-79, 135-141), Discussion (Lines 487-490, 495-501), and Conclusions (Line 688) were revised accordingly.

Another points: there are very short about "their potentials predators": you should develop a bit what you wrote in the discussion: something like the potential role of predator in such ecosytem changes regarding these species, for instance give existing example, if there are, about which ones are their natural predators in nature, are they able to survive as well with the ecosystem change based on published information" - if no manuscript exists on that subject, please mentioned it but not only wrote like you did on predator subject. I stress that point as in various taxa, the exposition within land modified expose them to different threars among them are paredators. It might as well new predators" whiar are not their natural ones but can prey on them as they live in open land, etc. So if you have some information on potential ants predators in open land, are we sure they won't prey on them?

Response: We agree with the Reviewer that predation may represent an additional ecological filter influencing the persistence of Atta species in human-modified landscapes. Therefore, we expanded the Discussion (Lines 595–607) to incorporate literature on natural enemies of leaf-cutting ants. These include phorid flies, armadillos, beetles, birds, and spiders. We also discuss the current lack of evidence evaluating whether changes in predator communities across forests, pastures, and urban environments differentially affect A. cephalotes and A. laevigata. Furthermore, we included the traditional harvest of reproductive females of A. laevigata for human consumption in the Santander region as an additional anthropogenic pressure that may deserve future investigation. Because neither predation nor human harvesting was quantified in the present study, we deliberately discuss these processes as potential ecological filters and future research directions rather than as mechanisms explaining our observed patterns.

Attachment

Submitted filename: Response to Reviewers.docx

pone.0351518.s017.docx (45.1KB, docx)

Decision Letter 1

Nickson Erick Otieno

14 Sep 2026

Generalism vs. specialization: Does niche breadth influence species responses to anthropogenic land-use change in Neotropical leaf-cutter ants?

PONE-D-26-26201R1

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Additional Editor Comments (optional):

The Authors are highly commended for the rigor with which they undertook revision of the article, paying close attention to every issue raised in the review and editorial comments at the previous stage, and doing so with a positive disposition. The paper now appears to meet publication standards by PLOS One, if the authors are prepared to make the few additional corrections as follows:

Re-read the whole paper and correct the few remaining grammatical and structural mistakes such as spellings, unnecessary gaps between some words within the Introduction and Discussion sections

The Results sections of the manuscript text after Line 388 appear rather to dense with statistical data. Please consider presenting some of those analysis results in tabulated form to improve  ease of summarized readability

Please endure that the references cited in the text are all listed in chronological sequence

Please consider breaking Fig 2 into two since they do not present results pf the same test procedure and therefore do not have to be displayed as multiple panels of one same figure. This would make it easier for interpretation

In the Conclusion section, please remove the first two sentences as they are more or less repetitions of either Introduction and Methodology or study justification. Similarly, as I suggested at the earlier stage, please include in Conclusion,  a short statement as to whether the original hypothesis/hypotheses was/were eventually realized from the results obtained.

Reviewers' comments:

Acceptance letter

Nickson Erick Otieno

PONE-D-26-26201R1

PLOS One

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Text. Disentangling the drivers of Principal Component 2 (PC2).

    Additional analysis examining the relative contribution of environmental variables to PC2.

    (DOCX)

    pone.0351518.s001.docx (27.7KB, docx)
    S1 Table. Representative geographic coordinates and corresponding visualization codes for the study locations.

    For each of the 12 sampled sites, a single representative GPS coordinate (decimal degrees, WGS 84 datum) is provided. The standardized two-letter abbreviation codes (Two-letter code) are explicitly defined here to facilitate spatial cross-referencing and improve graphical visualization in the box-plot distributions (S1 Fig).

    (DOCX)

    pone.0351518.s002.docx (27.8KB, docx)
    S2 Table. Comprehensive raw dataset of architectural, edaphic, and micro-climatic variables for Atta colonies.

    This external CSV dataset contains the microhabitat profiles and structural measurements recorded for 117 active sympatric colonies across a latitudinal and elevational transect in Santander, Colombia. Species identity is specified under the Species column, which comprises A. cephalotes (n = 56), A. laevigata (n = 58), and three colonies designated as U (n = 3), denoting individuals of ambiguous micro-habitat x morphology that could not be confidently classified to the species level in the field; these three unclassified colonies were included in the raw metadata for transparency but were systematically excluded from downstream species-specific statistical analyses. Column headers are defined as follows: Num_Col represents the unique numerical identifier assigned to each sampled nest; Location denotes the specific geographic site of collection (spanning 12 distinct sampling localities); Date_Fieldwork indicates the exact date of data collection; and Species identifies the target organism. Structural parameters include mound Length (cm), Width (cm), and Number_Active_Holes. Although Number_Active_Holes was ultimately excluded from downstream statistical modelling. Micro-climatic and edaphic axes consist of Out_Temp (°C; ambient external temperature), In_Temp (°C; internal mound temperature at ~10 cm depth), and Soil_pH. Canopy structural metrics are represented by Time_Photo (the exact timestamp of canopy image capture) and Photo_File (the high-resolution hemispherical photograph filename used to calculate canopy openness). In all main text analyses and figures, the calculated values derived from these hemispherical photographs are referred to as Canopy Openness (%), corresponding to the raw Light_Percentage values presented herein. Environmental background states are qualified under Sky (visual assessment of cloud cover parameters during sampling).

    (CSV)

    pone.0351518.s003.csv (10.6KB, csv)
    S3 Table. Descriptive statistics and Shapiro–Wilk normality tests for ecological variables measured in A. cephalotes (C) and A. laevigata (L).

    Means, standard deviations (SD), and p-values are presented for each species. Variables were classified as normally distributed when both species showed p > 0.05. The departure from normality observed for internal temperature in A. laevigata is likely attributable to the truncated sampling period (ending at approximately 14:00), which captured only the warming phase of the daily thermal cycle.

    (DOCX)

    pone.0351518.s004.docx (28.1KB, docx)
    S4 Table. Dispersion metrics for architectural and environmental variables.

    Intraspecific variation for A. cephalotes (C) and A. laevigata (L) is summarized using Standard Deviation (SD) and Interquartile Range (IQR). Larger values indicate greater within-species dispersion for the corresponding variable. Mound Area is reported in m2 to facilitate ecological interpretation.

    (DOCX)

    pone.0351518.s005.docx (27.4KB, docx)
    S5 Table. Percentage contribution of ecological and structural variables to the first two axes of the Principal Component Analysis (PCA).

    Variables are ordered by their contribution to PC1. High contributions on PC1 reflect local vegetation density and canopy architecture, whereas high loadings on PC2 differentiate colony dimensions (mound area and shape ratio) and chemical soil properties (pH).

    (DOCX)

    pone.0351518.s006.docx (27.2KB, docx)
    S6 Table. Indicator Value (IndVal) analysis of vegetation categories (Grasses, Bushes, and Trees) within a 10 m radius of A. cephalotes and A. laevigata mounds.

    Because vegetation categories were not mutually exclusive, indices were calculated based on the independent presence of each structural component. Specificity (A) indicates the exclusivity of a species to a vegetation category, Fidelity (B) indicates the frequency of the category’s occurrence with the species, and the IndVal index represents the combined indicative strength.

    (DOCX)

    pone.0351518.s007.docx (27.3KB, docx)
    S7 Table. Generalized Linear Model (GLM) regression results for the additive effects of colony architecture and species identity on soil pH.

    The model was fitted using a Gaussian error distribution and an identity link function (N = 111 colonies, reflecting the subset of the 114 total downstream colonies with complete soil pH records). Geographic localities were incorporated as categorical dummy variables to serve as spatial blocks, isolating landscape-level edaphic baselines. The reference baseline (Intercept) reflects a baseline geographic control site. Coefficients (β), standard errors (SE), Wald z-scores, and corresponding p-values are provided for each predictor variable.

    (DOCX)

    pone.0351518.s008.docx (29.2KB, docx)
    S8 Table. Generalized Linear Model (GLM) regression results evaluating the conditional effects and species-specific interactions of colony traits on soil pH.

    The model utilizes a Gaussian error distribution and an identity link function (N = 111 colonies, reflecting the subset of the 114 total downstream colonies with complete soil pH records) to test the biological hypothesis that soil engineering capacity varies as a function of species identity (represented by the multiplicative interaction term Mound_Area:Species[T.L]). Geographic localities are controlled via spatial blocking parameters. Coefficients (β), standard errors (SE), Wald z-scores, and p-values are reported for all fixed effects and spatial block contrasts.

    (DOCX)

    pone.0351518.s009.docx (29.3KB, docx)
    S1 Fig. Multivariate assessment of mound architecture, edaphic properties, and thermal regulation across sampling locations.

    Box-and-whisker plots (A–E) illustrate the intraspecific and interspecific variation for A. cephalotes (green) and A. laevigata (orange) across twelve distinct geographic sites. (A) Mound Area, presented as Log10-transformed values (cm2) to normalize the highly skewed distribution of colony sizes. (B) Shape Ratio, defined as the degree of surface symmetry. (C) Soil pH, representing the chemical conditions of the mound substrate. (D) Light Percentage, indicating the level of canopy openness at the nest site. (E) Temperature Difference, representing the thermal gradient between the internal colony core at ~10 cm and the external environment (°C). Shaded boxes denote the interquartile range (IQR), horizontal lines represent the median, and whiskers extend to 1.5 times the IQR. Two-letter codes at the base of each distribution correspond to specific sampling locations (e.g., MF: Montefrio, NZ: Nemizaque, etc.; see S1 Table for full location metadata).

    (DOCX)

    pone.0351518.s010.docx (231KB, docx)
    S2 Fig. Diel thermal profiles of Atta colony interiors.

    Points represent individual temperature measurements (n = 114) recorded at approximately 10 cm depth for A. cephalotes (green circles) and A. laevigata (orange crosses). Trend lines represent a second-order polynomial regression (R2 fit), with shaded ribbons indicating the 95% confidence intervals. A. laevigata colonies exhibited significantly higher internal temperatures compared to A. cephalotes (PERMANOVA test: ΔT = 1.2°C, p = 0.001; S3 and S4 Tables). The widening of the confidence interval for A. laevigata after 14:00 reflects the increased statistical uncertainty at the upper bound of the sampling window for this species.

    (DOCX)

    pone.0351518.s011.docx (980.4KB, docx)
    S3 Fig. Regional average February temperature across the study area in Santander, Colombia, derived from ERA5-Land reanalysis data.

    Panels (A–C) show the average 2 m air temperature (°C) for February 2024, 2025, and 2026, respectively, using a shared colour scale ranging from 16.74°C (yellow; lower temperatures) to 22.92°C (deep red; higher temperatures). All climatic heatmaps are georeferenced and overlaid on an OpenStreetMap basemap of the sampling region. Black points indicate the fieldwork locations where Atta colonies were surveyed, with location names provided for geographic reference across the latitudinal and elevational gradient of the study area. The map contains information from OpenStreetMap and OpenStreetMap Foundation, which is made available under the Open Database License. Map generated using Python 3.12.3 with the Matplotlib, Geopandas, and Contextily libraries.

    (DOCX)

    pone.0351518.s012.docx (322KB, docx)
    S4 Fig. Regional total precipitation across the study area in Santander, Colombia, derived from ERA5-Land reanalysis data.

    Panels (A–B) show the total annual accumulated precipitation (m) in 2024 and 2025, respectively, using a shared colour scale ranging from approximately 1.6 m (yellow; lower precipitation) to 2.5 m (deep blue; higher precipitation). Panel (C) shows cumulative precipitation from January to July 2026 and uses a separate colour scale because it represents a partial year. All climatic heatmaps are georeferenced and overlaid on an OpenStreetMap basemap of the sampling region. Black points indicate the fieldwork locations where Atta colonies were surveyed, with location names provided for geographic reference across the latitudinal and elevational gradient of the study area. The map contains information from OpenStreetMap and OpenStreetMap Foundation, which is made available under the Open Database License. Map generated using Python 3.12.3 with the Matplotlib, Geopandas, and Contextily libraries.

    (DOCX)

    pone.0351518.s013.docx (306.1KB, docx)
    S5 Fig. Regional total bare-soil evaporation across the study area in Santander, Colombia, derived from ERA5-Land reanalysis data.

    Panels (A–B) show the total annual accumulated bare-soil evaporation (mm) in 2024 and 2025, respectively, using a shared colour scale ranging from approximately 267 mm (yellow; lower evaporation) to 377 mm (deep blue; higher evaporation). Panel (C) shows cumulative bare-soil evaporation from January to July 2026 and uses a separate colour scale because it represents a partial year. All climatic heatmaps are georeferenced and overlaid on an OpenStreetMap basemap of the sampling region. Black points indicate the fieldwork locations where Atta colonies were surveyed, with location names provided for geographic reference across the latitudinal and elevational gradient of the study area. The map contains information from OpenStreetMap and OpenStreetMap Foundation, which is made available under the Open Database License. Map generated using Python 3.12.3 with the Matplotlib, Geopandas, and Contextily libraries.

    (DOCX)

    pone.0351518.s014.docx (321.8KB, docx)
    S1 Dataset. Characterization of canopy openness across sampled colonies via hemispherical photography.

    This PDF document compile the complete photographic registry for all 117 surveyed Atta colonies along the regional transect. Each row presents a pairwise comparison containing: (left) the raw hemispherical photograph converted to greyscale, and (right) the binarized silhouette version resulting from the interactive threshold masking process. Each pair is labelled with its unique image identifier (Photo_File), the selected binarization algorithm context (Sky: S [sunny], C [cloudy] or P [partially cloudy]), the specific mathematically applied Gamma correction factor, and the final estimated light percentage calculated over the mound. This light percentage serves as our proxy for canopy openness used in all downstream niche breadth and partitioning multivariate analyses.

    (PDF)

    pone.0351518.s015.pdf (7.6MB, pdf)
    S2 Dataset. Ground-level photographic registry of colony mound architectures.

    This compressed file (Supplementary_Dataset_S2.zip) contains the complete repository of fieldwork photographs of mounds for the 117 surveyed Atta colonies. The dataset includes wide-angle ground-level photographs of each distinct nest mound, captured utilizing the same hemispherical fish-eye lens system described for the canopy sub-canopy characterization in the Materials and Methods section. Additionally, some standard-format (non-distorted) landscape photographs are provided. While these visual records were not deployed as quantitative variables in downstream statistical modelling, they are archived here to provide transparent empirical evidence and an environmental record of the regional fieldwork. The .zip file was deposited at Zenodo and it is publicly available at https://doi.org/10.5281/zenodo.20342937.

    (DOCX)

    pone.0351518.s016.docx (26.7KB, docx)
    Attachment

    Submitted filename: Response to Reviewers.docx

    pone.0351518.s017.docx (45.1KB, docx)

    Data Availability Statement

    All relevant data are fully available without restriction. The original environmental measurements for the 114 colonies analysed in this study are provided in the Supporting Information (S2 Table). Ground-level photographs documenting colony mound architecture are publicly archived in Zenodo (https://doi.org/10.5281/zenodo.20342937). The hemispherical photographs used to estimate canopy openness are publicly archived in Zenodo (https://doi.org/10.5281/zenodo.20344008). The ERA5-Land reanalysis data used for the regional climatic characterization are archived in Zenodo (https://doi.org/10.5281/zenodo.21877589). The Python scripts and Jupyter notebooks used for image processing, statistical analyses, climatic data downloading and processing, and figure generation are archived in Zenodo (https://doi.org/10.5281/zenodo.21886892), with the corresponding development repository available on GitHub. The original image files (jpg) used to create Figures 1A and 1B were deposited publicly in the GitHub repository https://github.com/fernandoGarcia21/Atta-Realized-Niche-Breadth and those files were not used to generate any analysis.


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