Abstract
Background and purpose
To facilitate magnetic resonance imaging (MRI)-only radiotherapy workflows and overcome the lack of electron density information in MRI for accurate radiotherapy dose calculation, we proposed a cycle-consistent generative adversarial network-based framework, Fast Fourier Transform Spatial-Channel Net (FFTSC-Net). This study aimed to synthesize high-quality synthetic computed tomography (sCT) from lung ultrashort echo time-MRI (UTE-MRI) and assess its potential clinical dosimetric viability.
Materials and methods
UTE-MRI and CT data from 60 patients with lung cancer were retrospectively collected and spatially aligned through deformable registration. FFTSC-Net was developed by integrating spatial and channel reconstruction convolution, squeeze-and-excitation, and residual fast Fourier transform modules, alongside a dual contrastive loss function. The synthesis quality was evaluated using structural similarity index (SSIM), peak signal-to-noise ratio (PSNR), and mean absolute error (MAE). The clinical feasibility was assessed through Hounsfield unit (HU) consistency analysis in organs at risk (OARs) and planning target volume (PTV), dose volume histogram parameters, and gamma passing rates.
Results
FFTSC-Net achieved an SSIM of 0.80, PSNR of 20.07 dB, and MAE (HU) of 59.31. No statistically significant differences were observed in HU distributions for lungs, spinal cord, and PTV compared with planning CT (p > 0.05). Dosimetric analysis revealed no significant differences across all PTV and OAR indices (p > 0.05). Gamma passing rates reached 95.39% (2%/2 mm) and 98.08% (3%/3 mm).
Conclusion
FFTSC-Net demonstrates high image fidelity and dosimetric accuracy, supporting its potential for MRI-only radiotherapy planning in patients with lung cancer.
Keywords: Lung cancer, Deep learning, Image generation, Radiotherapy
Graphical abstract

Highlights
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FFTSC-Net produces synthetic computed tomography from lung ultrashort echo time magnetic resonance imaging for dosimetric validation.
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FFTSC-Net outperforms competing networks with a structural similarity index of 0.80, peak signal-to-noise ratio of 20.07 dB, and mean absolute error of 59.31 HU.
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The generated synthetic computed tomography presents stable HU values in the planning target volume and organs at risk.
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Mean relative dose differences between synthetic computed tomography and planning computed tomography were 0.01%–0.59%; standard deviations were 0.39%–3.44%.
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Gamma passing rates all exceed 95% under three standard evaluation criteria.
1. Introduction
Magnetic resonance imaging (MRI)-guided radiotherapy has emerged as a promising approach for the treatment of thoracic malignancies [1]. In particular, MRI-linear accelerator (MRI-Linac) systems offer superior soft-tissue visualization and real-time motion tracking, making online adaptive radiotherapy feasible for lung cancer patients [2], [3]. Despite these advantages, the implementation of an MRI-only radiotherapy workflow remains challenging. The main obstacle is that treatment planning systems (TPS) require electron density (ED) information from computed tomography (CT) for dose calculation, whereas MRI primarily provides information related to proton density and tissue relaxation properties (T1 and T2) [4]. Consequently, MRI cannot be directly used for radiotherapy dose calculation.
To bridge this gap, synthesizing pseudo-CT or synthetic CT (sCT) directly from MRI has become important for MRI-only radiotherapy workflows. For thoracic imaging, ultrashort echo time (UTE) MRI is particularly advantageous because it can capture rapidly decaying signals from the lung parenchyma with non-Cartesian k-space trajectories [5], [6], [7], [8], [9]. Notably, UTE itself cannot suppress motion artifacts; central k-space sampling provides self-navigator signals to sort k-space data into respiratory bins, and motion-compensated reconstruction further reduces respiratory artifacts [10], [11]. However, mapping UTE-MRI (proton density) to CT (ED) is non-linear, particularly across heterogeneous regions encompassing low-density lungs, dense ribs, and mobile cardiac borders. Deep learning methods, including U-Net [12] and generative adversarial networks (GANs) [13], have shown promising performance in sCT generation [14], [15], [16], but their application to thoracic imaging often results in blurred anatomical boundaries and inaccurate Hounsfield Unit (HU) estimation [17]. Furthermore, state-of-the-art supervised models (for example, conditional GANs) rely on paired datasets [18]. Nevertheless, cycle-consistent GANs (CycleGANs) [19] offer a compelling solution by enabling image-to-image translation on unpaired data. However, standard CycleGANs struggle to accurately characterize complex lung textures and high-frequency structural boundaries under unpaired constraints. To address these limitations, we developed an enhanced cycle-consistent framework, termed FFTSC-Net, for thoracic UTE-MRI-to-CT synthesis, incorporating spatial and channel reconstruction convolution (SCConv) [20], squeeze-and-excitation (SE) attention [21], residual fast Fourier transform (FFT) modules [22], and a dual contrastive loss [23] to improve anatomical feature representation, preserve high-frequency structural boundaries, and enhance voxel-wise HU fidelity.
Therefore, this study aimed (1) to synthesize high-fidelity sCT images from UTE-MRI to support MRI-only thoracic radiotherapy and (2) to evaluate their clinical feasibility through dosimetric consistency validation for lung cancer treatment planning.
2. Materials and methods
2.1. Data acquisition
This study was approved by the Ethics Committee of Hubei Cancer Hospital (No. LLHBCH2026YN-050). Written informed consent was obtained from all participants. A total of 60 patients (32 males and 28 females) with clinically confirmed lung cancer were enrolled in this study (mean age ± standard deviation (SD): 61 ± 10 years). Tumors were predominantly located in the right lung (33 cases), whereas 27 cases involved the left lung. All patients underwent planning CT (pCT) scanning using a GE Revolution EVO CT scanner (General Electric, Waukesha, WI, USA) with a tube voltage of 120 kVp. The acquired CT images had a matrix size of 512 × 512 × 55 and a slice thickness of 5 mm. On the same day, lung UTE-MRI data were obtained using the United Imaging uMR 790 3.0 T MRI system (United Imaging Healthcare, Shanghai, China) with the UTE sequence.
The UTE-MRI protocol used a respiratory-gated 3D radial sequence with a TR/TE of 2/0.16 ms and a slice thickness of 1.15 mm. Data acquisition lasted 4–5 min depending on individual respiratory patterns. Respiratory motion was reduced using a navigator sequence that monitored vertical diaphragmatic displacement. Images were reconstructed by re-gridding radial k-space data onto a Cartesian grid using a Kaiser-Bessel kernel, followed by three-dimensional FFT [24]. This non-iterative regridding pipeline carries low computational overhead, enabling on-scanner online reconstruction without high-memory GPU demands. Detailed UTE-MRI acquisition parameters are provided in the Supplementary Material A.
2.2. Data preprocessing
Intensity-based 3D registration was performed using 3D Slicer software to achieve precise spatial alignment [25], [26]. With the UTE-MRI volume serving as the fixed (reference) image and the pCT as the moving image, a two-step registration pipeline was employed. Initially, global rigid and affine transformations were applied using the BRAINSFit module. A non-linear deformable registration was performed using the Elastix module, based on B-spline transformations, to account for local anatomical variations. Both modules are powered by the underlying Insight Toolkit framework [27], [28]. The optimized deformation field was used to resample and interpolate the moving CT image (5 mm slice thickness) into the high-resolution UTE image space (1.15 mm slice thickness), to improve voxel-wise anatomical correspondence for model evaluation [29].
After registration, the 60 samples were randomly divided into training, validation, and testing sets at a ratio of 6:2:2. All competing models were trained on this identical dataset split and processed with the same preprocessing pipeline. External contour masks were generated to remove non-anatomical structures, such as the scanning bed and clothing, and to constrain the synthesis region. Normalization was applied to scale the grayscale values of UTE and CT images to a numerical range suitable for the deep learning model, thereby optimizing network training efficiency.
2.3. Network architecture
FFTSC-Net was developed based on a CycleGAN framework, with its overall architecture shown in Fig. 1. The proposed model builds upon the U-Net architecture [30], with several modifications introduced for UTE-MRI-to-CT synthesis (Fig. S1). An SCConv module was integrated into the first encoder layer to enhance low-level feature extraction and reduce feature redundancy. Transformer encoders combined with SE attention were used to improve feature recalibration during cross-modality translation. Furthermore, an FFT module was embedded in the skip connections to strengthen spatial–frequency feature representation, and DC loss was introduced to constrain the synthesized sCT toward the pCT domain. These components were designed to improve anatomical reconstruction and HU fidelity, particularly in high-frequency structures such as bone.
Fig. 1.

Schematic diagram of FFTSC-Net structure.
2.4. Comparison between different models
To validate the proposed approach, FFTSC-Net was compared with three representative image-synthesis models using the same test set: Cytran [31], Pix2Pix [32], and Utrans [33]. Cytran contains two generators and discriminators and uses cycle-consistency loss for unsupervised cross-modality translation to generate high-quality images [31]. Pix2Pix, a conditional GAN model, produces images conditioned on input images to realize cross-modality mapping [32]. Constructed based on the U-Net architecture, Utrans integrates generative adversarial learning for cross-modality image generation. By leveraging an encoder–decoder structure with skip connections, the model preserves fine structural details and maintains semantic consistency in high-resolution synthesized images [33].
2.5. Training parameter setting
The experiments were conducted on a workstation equipped with an Intel (R) Xeon (R) Silver 4210R CPU @ 2.40 GHz, 64.0 GB of RAM, and an NVIDIA GeForce RTX 3090 GPU (24 GB VRAM), running on the CentOS operating system. The model was developed using Python 3.7.16 and PyTorch 1.13.0. During the training phase, the initial learning rates for the generator and discriminator were set to 0.0002 and 0.0001, respectively. To balance the adversarial training, the generator was updated twice for every single update of the discriminator. A linear decay strategy was applied over a total of 150 epochs: The learning rates remained constant for the first 80 epochs and decayed linearly to zero over the remaining 70 epochs. The batch size was fixed at 8. Network training time was 45 h.
2.6. Image analysis
To quantitatively evaluate the accuracy and fidelity of the synthesized images, three metrics were employed: Peak signal-to-noise ratio (PSNR), structural similarity index (SSIM), and mean absolute error (MAE). The definitions and mathematical formulations for these metrics are as follows:
| (1) |
where represents the mean,denotes the variance, signifies the covariance, and and are constants that maintain stability.
| (2) |
Here, represents the maximum possible pixel value of an image.
| (3) |
where is the total number of pixels, and and represent the pixel values at position in the generated image and the standard image, respectively.
2.7. Treatment planning parameters
All treatment plans were designed and optimized using the Monaco TPS (Version 6.0.11, Elekta AB, Stockholm, Sweden). For each patient, intensity-modulated radiation therapy plans were developed using 6 MV photon beams from an Elekta linear accelerator equipped with an Agility 160-leaf multileaf collimator. Dose calculation was performed using the Monte Carlo algorithm with a 0.3 cm isotropic grid spacing and a statistical uncertainty of 1.0% per calculation. The prescribed dose was 60 Gy delivered in 30 fractions (2 Gy per fraction).
2.8. Dose calculation
The dosimetric impact of sCT was assessed through a plan-transfer study. Anatomical structures, including the planning target volume (PTV) and organs at risk (OARs: Heart, spinal cord, and bilateral lungs), were delineated on the pCT and mapped to the sCT via the registration. A clinical treatment plan was optimized and calculated on the pCT to satisfy standard dosimetric objectives for lung cancer. The optimized beam arrangements, fluences, and monitor units from the pCT plan were transferred to the corresponding sCT images. The dose was recalculated on the sCT to evaluate the consistency of dose distribution.
2.9. Dosimetric evaluation
Dosimetric agreement between sCT- and pCT-based plans was evaluated using dose volume histogram (DVH) parameters and gamma analysis. For target volume evaluation, PTV D95, D98, and D2 cm3 were calculated to evaluate dose coverage within the target, where Dx denotes the dose covering x% of the PTV, and D2 cm3 is defined as the minimum dose received by the most irradiated 2 cm3 of the target volume. Lung dose was evaluated using V20, V10 and V5, with dose constraints of V20 < 25%, V10 < 40%, and V5 < 50%. Heart dose was evaluated using V30 and mean dose (Dmean), with constraints of V30 < 40% and Dmean < 20 Gy. Spinal cord dose was assessed using the maximal dose (Dmax), which was less than 45 Gy. In these metrics, Vx denotes the percentage volume of OARs receiving a dose greater than x Gy. The dose constraints were based on the Quantitative Analysis of Normal Tissue Effects in the Clinic (QUANTEC) guidelines [34]. 2D gamma analysis was performed to quantify global dose distribution consistency, using criteria of 2%/2 mm, 3%/2 mm, and 3%/3 mm with a 10% dose threshold.
2.10. Statistical analysis
In this study, all data were processed using SPSS 22.0 software. Continuous variables are expressed as mean ± SD. A paired t-test was performed to evaluate differences in HU values of OARs and the PTV between pCT and sCT, and to assess differences in DVH metrics between sCT and pCT-based plans. All statistical analyses were conducted using two-sided tests, and p < 0.05 indicated statistically significant differences between the compared groups.
3. Results
Table 1 summarizes the quantitative evaluation results of all sCT images in the test set. FFTSC-Net achieved an SSIM of 0.80, PSNR of 20.07 dB, and MAE of 59.31 HU. Compared with Cytran, Pix2Pix, and Utrans on the same test set, FFTSC-Net showed the best performance across all three metrics.
Table 1.
SSIM, PSNR, and MAE (HU) of images generated by different models.
| Model | SSIM | PSNR | MAE(HU) |
|---|---|---|---|
| Cytran | 0.72 | 16.58 | 110.65 |
| Pix2Pix | 0.73 | 14.86 | 120.75 |
| Utrans | 0.75 | 16.57 | 95.98 |
| FFTSC-Net | 0.80 | 20.07 | 59.31 |
Abbreviations: SSIM, Structural Similarity Index; PSNR, Peak Signal-to-Noise Ratio; MAE (HU), Mean Absolute Error (Hounsfield unit).
Fig. 2 shows representative sCT images generated by different models and their corresponding MAE (HU) maps. Compared with the other methods, FFTSC-Net better preserved anatomical structures, including the spine and lesions. The MAE maps of the comparison networks showed broad red/yellow regions around complex anatomical boundaries (Figs. 2C, D, and E), whereas the MAE map of FFTSC-Net showed fewer red/yellow regions and a more uniform low-error background (Fig. 2F), indicating improved consistency with the pCT.
Fig. 2.

Transverse slices of UTE-MRI, pCT, and sCT obtained from different networks, (A)pCT; (B)UTE-MRI; (C)Cytran; (D)Pix2Pix; (E)Utrans; (F)FFTSC-Net.
Table 2 summarizes the mean HU values of all OARs and the PTV in the test set. No significant differences were observed between sCT and pCT in the bilateral lungs, spinal cord, or PTV (all p > 0.05), indicating comparable tissue density representation in these regions. In contrast, the heart showed a significant HU difference between sCT and pCT (p < 0.05), suggesting relatively reduced synthesis accuracy in this region.
Table 2.
The HU difference between pCT and sCT was evaluated for different OARs and the PTV in the 12 test cases.
| Pt# |
R Lung |
L Lung |
Spinal Cord |
Heart |
PTV |
|||||
|---|---|---|---|---|---|---|---|---|---|---|
| pCT | sCT | pCT | sCT | pCT | sCT | pCT | sCT | pCT | sCT | |
| Pt1 | −726.31 | −735.43 | −748.26 | −745.09 | 28.84 | 17.61 | 38.17 | 34.45 | −101 | −81 |
| Pt2 | −698.89 | −715.64 | −693.01 | −745.05 | 24.88 | 5.85 | 38.26 | 28.94 | −353 | −343 |
| Pt3 | −760.89 | −763.99 | −753.04 | −768.68 | 30.38 | 3.74 | 36.81 | 37.65 | −394 | −399 |
| Pt4 | −761.03 | −695.92 | −813.85 | −743.41 | 25.05 | 27.71 | 32.34 | 29.38 | −261 | −194 |
| Pt5 | −777.69 | −724.24 | −730.43 | −727.28 | 19.66 | 15.29 | 36.47 | 25.85 | −336 | −328 |
| Pt6 | −574.20 | −610.01 | −696.76 | −729.24 | 24.37 | 11.96 | 34.84 | 27.74 | −79 | −77 |
| Pt7 | −725.84 | −739.31 | −753.30 | −767.39 | 16.77 | 20.11 | 36.95 | 30.61 | −513 | −535 |
| Pt8 | −831.28 | −826.92 | −848.47 | −811.06 | 17.39 | 29.85 | 38.33 | 21.33 | −411 | −409 |
| Pt9 | −687.23 | −686.74 | −799.72 | −760.90 | 20.22 | 9.96 | 34.97 | 34.80 | −141 | −117 |
| Pt10 | −818.63 | −752.66 | −788.72 | −700.95 | 25.54 | 28.96 | 32.11 | 30.80 | −315 | −299 |
| Pt11 | −873.56 | −862.69 | −839.16 | −803.86 | 25.34 | 34.15 | 33.71 | 21.96 | −203 | −201 |
| Pt12 | −824.88 | −746.56 | −802.89 | −702.96 | 36.28 | 10.31 | 34.97 | 32.64 | −401 | −350 |
| p value | 0.45 | 0.33 | 0.08 | <0.05 | 0.06 | |||||
Abbreviations: R Lung, (Right Lung); L Lung, (Left Lung); PTV, Planning Target Volume.
Table 3 summarizes the dosimetric differences between sCT and pCT-based dose calculations. Across all treatment plans, the mean relative differences for lung V20, V10, and V5 were − 0.07% ± 0.51%, −0.45% ± 0.68%, and 0.43% ± 1.07%, respectively. For the heart, the mean differences in V30 and Dmean were 0.27% ± 3.44% and 0.01% ± 0.50%, respectively, while the mean difference in spinal cord Dmax was −0.59% ± 1.84%. For PTV dose evaluation, the mean relative differences in D95, D98, and were − 0.20% ± 0.39%, −0.05% ± 0.42%, and 0.02% ± 0.69%, respectively. No significant differences were observed between sCT and pCT across all dosimetric parameters (all p > 0.05). Fig. S2 demonstrates the 2D dose distribution cross-sections at the target level for two randomly selected patients. The isodose distributions on the sCT are similar to those on the pCT. Fig. 3 displays DVH plots for two patients, where the DVH curves for the PTV and OARs are similar for sCT and pCT.
Table 3.
Comparison of dosimetric parameters between pCT and sCT for different OARs and the PTV in the 12 test cases.
| Parameter | pCT | sCT | Relative Error ± SD | p value |
|---|---|---|---|---|
| Lung V20(%) | 13.41% ± 5.57% | 13.41% ± 5.56% | −0.07% ± 0.51% | 0.973 |
| Lung V10 (%) | 20.98% ± 8.18% | 20.87% ± 8.10% | 0.45% ± 0.68% | 0.065 |
| Lung V5 (%) | 33.42% ± 12.80% | 33.29% ± 12.71% | 0.43% ± 1.07% | 0.231 |
| Spinal Cord Dmax(Gy) | 20.12 ± 8.97 Gy | 20.19 ± 8.93Gy | −0.59% ± 1.84% | 0.460 |
| Heart V30 (%) | 3.33% ± 4.19% | 3.31% ± 4.16% | 0.27% ± 3.44% | 0.278 |
| Heart Dmean (Gy) | 6.68 ± 5.55 Gy | 6.67 ± 5.53Gy | 0.01% ± 0.50% | 0.340 |
| PTV D95 (Gy) | 61.10 ± 0.18Gy | 61.22 ± 0.21Gy | −0.20% ± 0.39% | 0.107 |
| PTV D98 (Gy) | 60.77 ± 0.21Gy | 60.80 ± 0.28Gy | −0.05% ± 0.42% | 0.701 |
| PTV(Gy) | 64.13 ± 0.30Gy | 64.12 ± 0.43Gy | 0.02% ± 0.69% | 0.918 |
Abbreviations: Vx, the percentage of an organ or tissue volume receiving ≥ x Gy; Dmax, the maximum dose received by a given organ or tissue; Dmean, the mean dose received by a given organ or tissue; Dx, the minimum dose received by at least x% of the target volume; , the minimum dose received by the most irradiated 2 cm3 of the target volume; SD, standard deviation.
Fig. 3.

The DVH curves of the OARs and PTV for two cases, comparing sCT (dash lines) and pCT (solid lines).
Gamma index analysis was performed across the entire test set to evaluate dosimetric agreement. Under the criteria of 2%/2 mm, 3%/2 mm, and 3%/3 mm, the average gamma passing rate reached 95.39%, 97.30%, and 98.08%, respectively. Notably, all passing rates exceeded the clinical acceptance threshold of 95%, supporting the high dosimetric accuracy of the synthetic sCT for radiotherapy planning purposes. Fig. S3 shows representative gamma index maps under the three criteria, indicating good spatial agreement between sCT and pCT-based dose distributions.
4. Discussion
FFTSC-Net was used to generate sCT images from lung cancer UTE-MRI, followed by dosimetric consistency validation. Compared with the evaluated networks, FFTSC-Net achieved superior image synthesis performance, with an SSIM of 0.80, a PSNR of 20.07 dB, and an MAE (HU) of 59.31. The generated sCT images showed good HU consistency in the OARs and PTV. Mean relative dosimetric differences were within 0.6%, with SDs ranging from 0.39% to 3.44%, and mean gamma passing rates exceed 95% under all three criteria.
A baseline CycleGAN-based U-Net framework [30] was used as the initial benchmark. However, this baseline showed limited modality translation, with residual UTE-specific grayscale patterns and insufficient reconstruction of anatomical structures such as muscle and spinal cord. To address these limitations, several targeted modifications were introduced. SCConv was incorporated into the generator encoder to reduce feature redundancy and improve low-level feature extraction in complex pulmonary regions [20], [35]. SE attention and Transformer encoders were used to enhance feature recalibration during cross-modality translation [36]. In addition, FFT modules were embedded in the skip connections to strengthen spatial–frequency feature representation, particularly for high-frequency structures such as bone and chest wall boundaries [37]. DC loss was further introduced to improve voxel-wise HU consistency by constraining the synthesized images toward the pCT domain [38]. These modifications contributed to improved anatomical reconstruction and image synthesis performance compared with the baseline model.
Previous studies have explored deep learning-based MRI-to-CT synthesis [14], but relatively few have focused on lung sCT generation. Kang et al. [39] employed a basic UNet and CycleGAN for thoracic CT synthesis and reported MAE values of 134 HU and 63.7 HU, respectively, both higher than that achieved by FFTSC-Net in the present study. Bombini et al. [17] achieved a lower whole-body MAE of 35.9 HU using an adaptive Fourier neural operator, whereas FFTSC-Net showed higher synthesis accuracy in the spinal cord region. Although Kang et al. reported superior performance for the spinal cord [39], their study included only six lung cases, limiting the precision and generalizability of the results. Training and inference time are important indicators of model efficiency and practical deployability, particularly for translation-oriented clinical applications. Longuefosse et al. [40] applied a GAN-based approach, whereas Lenkowicz et al. [41] employed a conditional GAN for lung CT synthesis. The former reported an SSIM of 0.92, and the latter achieved a whole-body MAE of 56.8 HU; however, their corresponding training times were substantially prolonged (∼400 h and 70 h, respectively). In comparison, FFTSC-Net achieved competitive quantitative performance with a training time of 45 h and an inference time of 5 min 10 s, suggesting its potential for practical clinical application.
Dosimetric validation further supported the feasibility of FFTSC-Net-generated sCT for dose calculation. HU consistency of different OARs and the PTV was evaluated as an indirect verification of whether the image-level MAE (HU) translates into dose calculation accuracy. For the bilateral lungs, spinal cord, and PTV, no statistically significant differences in mean HU values were observed between sCT and pCT (all p > 0.05), indicating good HU reconstruction consistency of the generated sCT in critical anatomical structures. While Wang et al. [42] reported a statistically significant HU difference in the spinal cord (p = 0.007), no such discrepancy was identified in our work. Moreover, DVH analysis demonstrated that none of the nine evaluated DVH metrics exhibited statistically significant differences between sCT and pCT-based dose calculations (all p > 0.05) (Table 3). Furthermore, several dosimetric trends were consistent with those reported in previous studies [17], [39], [41], supporting the dosimetric consistency of the proposed approach. A gamma passing rate exceeding 95% or even 98% under the 3%/2 mm criterion suggests high spatial dose agreement between sCT and pCT dose distributions. Under the 2%/2 mm criterion, the gamma passing rates achieved in this study compare favorably with those reported by Duetschler et al. [43]. Under the 3%/3 mm criterion, our results were consistent with those reported in related studies [41], [42], supporting the potential utility of the generated sCT for dose calculation.
Several limitations should be acknowledged. (1) The relatively small sample size may limit the generalizability of the model, and larger multi-institutional studies are needed for further validation. (2) Significant HU discrepancies were observed in the heart (p < 0.05), which may be related to cardiac motion because the UTE-MRI protocol was not ECG-gated. Future work may incorporate cardiac-resolved imaging or region-aware constraints to improve synthesis accuracy in mobile regions. (3) The effects of MRI acquisition parameters, such as flip angle and repetition time, were not systematically evaluated. A more T1-weighted regime may improve tissue contrast and potentially enhance the generative model's feature learning, which will be explored in future work. (4) Deformable registration uncertainty and the spatial resolution mismatch between CT and UTE-MRI may have affected quantitative evaluation, and future studies using higher-resolution matched datasets or super-resolution-assisted approaches may help reduce these errors.
CRediT authorship contribution statement
Kaiyi Zheng: Writing – review & editing, Writing – original draft, Data curation. Xudong Xue: Writing – review & editing, Methodology, Funding acquisition. Qi Zhang: Writing – review & editing, Methodology. Fengqin Zhou: Data curation. Jia Xu: Data curation. Xingyu Wang: Data curation. Xiaopeng Song: Software, Methodology. Wei Mao: Software, Methodology. Zilong Yuan: Writing – review & editing, Supervision, Methodology, Funding acquisition. Yulin Liu: Writing – review & editing, Supervision, Resources, Funding acquisition.
Ethics declaration
Written informed consent to take part in the study and to publish the article has been obtained from all participants or their legal representatives. The privacy rights of participants have been observed.
This study was performed in compliance with relevant laws, regulatory frameworks and guidelines where the research took place.
This study was approved by the Hubei Cancer Hospital.
(Approval No. No. LLHBCH2026YN-050)
Funding
This study was supported by Talent Project of Hubei Cancer Hospital (No. 2025HBCHLHRC001); Hubei Province “Chutian Talents Program” medical and health personnel project (No. CTYC001); Beijing Huikang Charity Foundation (No. HKRA2025040009); Scientific Research Projects of Hubei Cancer Hospital (No. 2025HBCHYN23); Project of the Joint Fund for Innovation and Development of the Natural Science Foundation of Hubei Province of China (Grant No. 2026AFC1478); the National Key Clinical Specialty Construction Discipline Project (No. HBCHBCCC02); the Talent Project of Hubei Cancer Hospital (No. 2025HBCHQHRC017).
Declaration of competing interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Footnotes
Supplementary data to this article can be found online at https://doi.org/10.1016/j.phro.2026.101087.
Contributor Information
Zilong Yuan, Email: yuanzilong0213@126.com.
Yulin Liu, Email: liuyl26@163.com.
Appendix A. Supplementary data
Supplementary material
References
- 1.Mutic S., Dempsey J.F. The ViewRay system: magnetic resonance-guided and controlled radiotherapy. Semin Radiat Oncol. 2014;24:196–199. doi: 10.1016/j.semradonc.2014.02.008. [DOI] [PubMed] [Google Scholar]
- 2.Menten M.J., Wetscherek A., Fast M.F. MRI-guided lung SBRT: present and future developments. Phys Med. 2017;44:139–149. doi: 10.1016/j.ejmp.2017.02.003. [DOI] [PubMed] [Google Scholar]
- 3.Werensteijn-Honingh A.M., Kroon P.S., Winkel D., Aalbers E.M., van Asselen B., Bol G.H., et al. Feasibility of stereotactic radiotherapy using a 1.5 T MR-linac: multi-fraction treatment of pelvic lymph node oligometastases. Radiother Oncol. 2019;134:50–54. doi: 10.1016/j.radonc.2019.01.024. [DOI] [PubMed] [Google Scholar]
- 4.Edmund J.M., Nyholm T. A review of substitute CT generation for MRI-only radiation therapy. Radiat Oncol. 2017;12:28. doi: 10.1186/s13014-016-0747-y. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Stecker I.R., Bdaiwi A.S., Cao Z., Virgincar R.S., Woods J.C., Johnson G.A., et al. Impact of undersampling on preclinical lung T2* mapping with 3D radial UTE MRI at 7 T. J Magn Reson. 2024;365 doi: 10.1016/j.jmr.2024.107741. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Yang X., Yu P., Sun H., Deng M., Liu A., Li C., et al. Assessment of lung deformation in patients with idiopathic pulmonary fibrosis with elastic registration technique on pulmonary three-dimensional ultrashort echo time MRI. Insights Imaging. 2024;15 doi: 10.1186/s13244-023-01555-x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Willmering M.M., Robison R.K., Wang H., Pipe J.G., Woods J.C. Implementation of the FLORET UTE sequence for lung imaging. Magn Reson Med. 2019;82:1091–1100. doi: 10.1002/mrm.2780. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Maatman I.T., Schulz J., Ypma S., Block K.T., Schmitter S., Hermans J.J., et al. Free-breathing high-resolution respiratory-gated radial stack-of-stars magnetic resonance imaging of the upper abdomen at 7 T. NMR Biomed. 2024;37 doi: 10.1002/nbm.5180. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Ajala A., Abad N., Foo T.K.F., Lee S.K. Retrospective correction of second-order concomitant fields in 3D axial stack-of-spirals imaging on a high-performance gradient system. Magn Reson Med. 2024;92:1128–1137. doi: 10.1002/mrm.30113. [DOI] [PubMed] [Google Scholar]
- 10.Tan F., Zhu X., Chan M., Zapala M.A., Vasanawala S.S., Ong F., et al. Motion-compensated low-rank reconstruction for simultaneous structural and functional UTE lung MRI. Magn Reson Med. 2023;90:1101–1113. doi: 10.1002/mrm.29703. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Zhu X., Chan M., Lustig M., Johnson K.M., Larson P.E.Z. Iterative motion-compensation reconstruction ultra-short TE (iMoCo UTE) for high-resolution free-breathing pulmonary MRI. Magn Reson Med. 2020;83:1208–1221. doi: 10.1002/mrm.27998. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Ronneberger O., Fischer P., Brox T. U-net: convolutional networks for biomedical image segmentation. Lect Notes Comput Sci. 2015;9351:234–241. doi: 10.1007/978-3-319-24574-4_28. [DOI] [Google Scholar]
- 13.Goodfellow I.J., Pouget-Abadie J., Mirza M., Xu B., Warde-Farley D., Ozair S., et al. Generative adversarial nets. Adv Neural Inf Process Syst. 2014;27:2672–2680. doi: 10.48550/arXiv.1406.2661. [DOI] [Google Scholar]
- 14.Vellini L., Quaranta F., Menna S., Pilloni E., Catucci F., Lenkowicz J., et al. A deep learning algorithm to generate synthetic computed tomography images for brain treatments from 0.35 T magnetic resonance imaging. Phys Imaging Radiat Oncol. 2025;33 doi: 10.1016/j.phro.2025.100708. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Earwong P., Puttanawarut C., Suphaphong S., Worapruekjaru L., Jiarpinitnun C., Sawapabmongkon T., et al. Clinical implementation of deep learning-based synthetic CT for MRI-only volumetric modulated arc therapy in head and neck and pelvic cancer patients. Radiat Oncol. 2025;20:166. doi: 10.1186/s13014-025-02744-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Li X., Jia L., Lin F., Chai F., Liu T., Zhang W., et al. Synthetic CT generation for pelvic cases based on deep learning in multi-center datasets. Radiat Oncol. 2024;19:89. doi: 10.1186/s13014-024-02467-w. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Bombini A., Vellini L., Quaranta F., Lenkowicz J., Menna S., Pilloni E., et al. Optimizing thoracic synthetic computed tomography generation from magnetic resonance imaging: the role of Fourier transform and other key factors. Phys Imaging Radiat Oncol. 2026;37 doi: 10.1016/j.phro.2025.100893. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Jin D., Xu Z., Tang Y., Harrison A.P., Mollura D.J. CT-realistic lung nodule simulation from 3D conditional generative adversarial networks for robust lung segmentation. Lect Notes Comput Sci. 2018;11071:732–740. doi: 10.1007/978-3-030-00934-2_81. [DOI] [Google Scholar]
- 19.Zhu J.Y., Park T., Isola P., Efros A.A. 2017. Unpaired image-to-image translation using cycle-consistent adversarial networks; pp. 2223–2232. Proc IEEE Int Conf Comput Vis. [DOI] [Google Scholar]
- 20.Li J., Wen Y., He L. 2023. SCConv: spatial and channel reconstruction convolution for feature redundancy; pp. 6153–6162. Proc IEEE/CVF Conf Comput Vis Pattern Recognit. [DOI] [Google Scholar]
- 21.Hu J., Shen L., Sun G. 2018. Squeeze-and-excitation networks; pp. 7132–7141. Proc IEEE/CVF Conf Comput Vis Pattern Recognit. [DOI] [PubMed] [Google Scholar]
- 22.Kyung S., Won J., Pak S., Kim S., Lee S., Park K., et al. Generative adversarial network with robust discriminator through multi-task learning for low-dose CT denoising. IEEE Trans Med Imaging. 2025;44:499–518. doi: 10.1109/TMI.2024.3449647. [DOI] [PubMed] [Google Scholar]
- 23.Wang J., Wu Q.M.J., Pourpanah F. DC-cycleGAN: bidirectional CT-to-MR synthesis from unpaired data. Comput Med Imaging Graph. 2023;108 doi: 10.1016/j.compmedimag.2023.102249. [DOI] [PubMed] [Google Scholar]
- 24.Beatty P.J., Nishimura D.G., Pauly J.M. Rapid gridding reconstruction with a minimal oversampling ratio. IEEE Trans Med Imaging. 2005;24:799–808. doi: 10.1109/TMI.2005.848376. [DOI] [PubMed] [Google Scholar]
- 25.Fedorov A., Beichel R., Kalpathy-Cramer J., Finet J., Fillion-Robin J.C., Pujol S., et al. 3D slicer as an image computing platform for the quantitative imaging network. Magn Reson Imaging. 2012;30:1323–1341. doi: 10.1016/j.mri.2012.05.001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Markelj P., Tomaževič D., Likar B., Pernuš F., Frangi A.F., Viergever M.A., et al. Three-dimensional multi-modality registration for orthopaedics and cardiovascular settings: state-of-the-art and clinical applications. J Med Imaging Radiat Oncol. 2010;54:317–329. doi: 10.3390/s24041072. [DOI] [Google Scholar]
- 27.Johnson H.J., Harris G., Williams K., Magnotta V.A., Blumer P., Van Vooren S., et al. BRAINSFit: mutual information rigid registrations of whole-brain 3D images using the insight toolkit. Insight J. 2007;57:1–10. doi: 10.54294/hmb052. [DOI] [Google Scholar]
- 28.Klein S., Staring M., Murphy K., Viergever M.A., Pluim J.P.W., Niessen W.J., et al. Elastix: a toolbox for intensity-based medical image registration. IEEE Trans Med Imaging. 2010;29:196–205. doi: 10.1109/TMI.2009.2035616. [DOI] [PubMed] [Google Scholar]
- 29.Maintz J.B.A., Viergever M.A. A survey of medical image registration. Med Image Anal. 1998;2:1–36. doi: 10.1016/S1361-8415(01)80026-8. [DOI] [PubMed] [Google Scholar]
- 30.Phan V.M.H., Xie Y., Zhang B., Qi Y., Liao Z., Perperidis A., et al. Structural attention: rethinking transformer for unpaired medical image synthesis. Lect Notes Comput Sci. 2024;15007:690–700. doi: 10.1007/978-3-031-72104-5_66. [DOI] [Google Scholar]
- 31.Ristea N.C., Miron A.I., Savencu O., Georgescu M.I., Verga N., Khan F.S., et al. CyTran: a cycle-consistent transformer with multi-level consistency for non-contrast to contrast CT translation. Neurocomputing. 2023;538 doi: 10.1016/j.neucom.2023.03.072. [DOI] [Google Scholar]
- 32.Isola P., Zhu J.Y., Zhou T. 2017. Image-to-image translation with conditional adversarial networks pp. 1125–1134. . Proc IEEE Conf Comput Vis Pattern Recognit. [DOI] [Google Scholar]
- 33.Wang H., Cao P., Wang J., Zaiane O.R. UCTransNet: rethinking the skip connections in U-net from a channel-wise perspective with transformer. Proc AAAI Conf Artif Intell. 2022;36:2441–2449. doi: 10.48550/arXiv.2109.04335. [DOI] [Google Scholar]
- 34.Marks L.B., Yorke E.D., Jackson A., Ten Haken R.K., Constine L.S., Eisbruch A., et al. Use of normal tissue complication probability models in the clinic. Int J Radiat Oncol Biol Phys. 2010;76:S10–S19. doi: 10.1016/j.ijrobp.2009.07.1754. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Zhou J., Yang X., Ren Z. SCConv-denoising diffusion probabilistic model anomaly detection based on TimesNet. Electronics. 2025;14:746. doi: 10.3390/electronics14040746. [DOI] [Google Scholar]
- 36.Qiu X, Dai Y, Tan X, Li S, Sun F, Gan L, et al. SRU-Pix2Pix: a fusion-driven generator network for medical image translation with few-shot learning. 2026. DOI:10.48550/arXiv.2601.04785.
- 37.Wu J., Si S., Wang J., Xiao J. 2022. Improving human image synthesis with residual fast Fourier transformation and Wasserstein distance; pp. 1–8. Proc Int Joint Conf Neural Netw. [DOI] [Google Scholar]
- 38.Asaf M.Z., Rao B., Akram M.U., Khawaja S.G., Khan S., Truong T.M., et al. Dual contrastive learning based image-to-image translation of unstained skin tissue into virtually stained H&E images. Sci Rep. 2024;14:2335. doi: 10.1038/s41598-024-52833-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Kang S.K., An H.J., Jin H., Kim J.I., Chie E.K., Park J.M., et al. Synthetic CT generation from weakly paired MR images using cycle-consistent GAN for MR-guided radiotherapy. Biomed Eng Lett. 2021;11:263–271. doi: 10.1007/s13534-021-00195-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Longuefosse A., Dournes G., Benlala I., Denis de Senneville B., Laurent F., Desbarats P., et al. 2023. Lung CT synthesis using GANs with conditional normalization on registered ultrashort echo-time MRI; pp. 1–5. Proc IEEE int Symp biomed Imaging. [DOI] [Google Scholar]
- 41.Lenkowicz J., Votta C., Nardini M., Quaranta F., Catucci F., Boldrini L., et al. A deep learning approach to generate synthetic CT in low field MR-guided radiotherapy for lung cases. Radiother Oncol. 2022;176:31–38. doi: 10.1016/j.radonc.2022.08.028. [DOI] [PubMed] [Google Scholar]
- 42.Wang H., Chandarana H., Block K.T., Vahle T., Fenchel M., Das I.J. Dosimetric evaluation of synthetic CT for magnetic resonance-only based radiotherapy planning of lung cancer. Radiat Oncol. 2017;12 doi: 10.1186/s13014-017-0845-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Duetschler A., Bauman G., Bieri O., Cattin P.C., Ehrbar S., Engin-Deniz G., et al. Synthetic 4DCT(MRI) lung phantom generation for 4D radiotherapy and image guidance investigations. Med Phys. 2022;49:2890–2903. doi: 10.1002/mp.15591. [DOI] [PMC free article] [PubMed] [Google Scholar]
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