Skip to main content
Frontiers in Microbiology logoLink to Frontiers in Microbiology
. 2026 Sep 21;17:1961127. doi: 10.3389/fmicb.2026.1961127

Optimization of extraction conditions for total flavonoids from Clerodendrum cyrtophyllum Turcz. and its antibacterial activity and mechanism against Staphylococcus aureus

Yue Hu 1, Wenwen Luo 1, Chengjian Tan 1, Guoshun Pei 1,*
PMCID: PMC13635108  PMID: 42835268

Abstract

Introduction

Clerodendrum cyrtophyllum Turcz., a traditional Chinese medicinal plant, exhibits broad bioactivity. Nevertheless, the flavonoid constituents conferring anti-Staphylococcus aureus (S. aureus) activity and their mechanistic basis remain to be elucidated.

Methods

Total flavonoid extraction from Clerodendrum cyrtophyllum Turcz. (TFC) was first evaluated by single-factor experiments to screen key variables and subsequently optimized by a Box–Behnken design (BBD) within response surface methodology (RSM). followed by purification with D101 macroporous resin. Liquid chromatography–tandem mass spectrometry (LC–MS/MS) characterized the chemical profile. Antibacterial activity against S. aureus was assessed via inhibition zones, minimum inhibitory concentration (MIC), minimum bactericidal concentration (MBC), and growth curves. Mechanisms were explored by evaluating cell surface hydrophobicity (CSH), extracellular alkaline phosphatase (AKP), leakage of nucleic acids/proteins, membrane potential, ATP levels, reactive oxygen species (ROS) content, and morphological alterations.

Results

The optimal extraction conditions for TFC were determined as 70% ethanol as the solvent, an extraction time of 102 min, a temperature of 64 °C, and a solid–liquid ratio of 1:25 (g: mL), resulting in a yield of 6.48% ± 0.58. After purification, the purity of TFC was increased to 76%, and preliminary analysis identified 85 flavonoid constituents. TFC exhibited inhibition zone diameters of 13 ± 0.45 mm, 16 ± 0.38 mm, and 20 ± 0.45 mm at concentrations of 50, 100, and 150 mg/mL, respectively, with MIC and MBC values of 0.781 mg/mL and 1.562 mg/mL. Notably, TFC effectively inhibited the growth of S. aureus within 24 h. Mechanistic investigations revealed that TFC treatment increased S. aureus CSH and decreased the membrane potential, leading to the leakage of intracellular nucleic acids and proteins, indicating damage to S. aureus cells, which was further confirmed by SEM. Furthermore, TFC induced significant intracellular ATP depletion, decreased intracellular nucleic acids and protein contents, and triggered excessive ROS production.

Conclusion

This study optimized the extraction conditions of TFC and successfully obtained TFC rich in multiple flavonoid constituents. TFC exerts potent inhibitory effects on S. aureus by disrupting the integrity of cell walls and membranes, depleting intracellular energy reserves, decreasing the contents of intracellular nucleic acids and proteins, and inducing intracellular oxidative stress.

Keywords: antibacterial activity, antibacterial mechanism, Clerodendrum cyrtophyllum Turcz., component analysis, flavonoids, response surface optimization, Staphylococcus aureus

1. Introduction

Staphylococcus aureus (S. aureus), a ubiquitous infectious pathogen, represents a significant threat to both public health and livestock production (Cheung et al., 2021). It is capable of causing a wide spectrum of infectious diseases across all age groups, with particularly severe outcomes in immunecompromised individuals. When host immunity is compromised or skin mucosal barriers are breached, S. aureus can invade the bloodstream and disseminate to various tissues, potentially leading to systemic infections affecting nearly all organ systems (Kouijzer and Ghanem-Zoubi, 2024). The diseases it induces range from mild gastrointestinal manifestations (e.g., abdominal pain and diarrhea) to severe conditions such as skin and soft tissue infections, pneumonia, endocarditis, osteomyelitis, sepsis, and toxic shock syndrome (Zheng et al., 2025; Mlynarczyk-Bonikowska and Rudnicka, 2025; Tong et al., 2025). Consequently, in-depth investigation into the pathogenic mechanisms of S. aureus and the development of effective control strategies are crucial for safeguarding public health.

Currently, the clinical management of S. aureus infections predominantly relies on antibiotics, including β-lactams (e.g., methicillin, penicillin), glycopeptides (e.g., vancomycin), oxazolidinones (e.g., linezolid), and daptomycin (Tong et al., 2025; Liu et al., 2024). Nevertheless, the clinical application of these antibacterial agents is constrained by potential adverse effects, such as nephrotoxicity and bone marrow suppression (Wong et al., 2024; Karimzadeh et al., 2025). Consequently, there is an urgent need to develop alternative anti-S. aureus agents that combine high efficacy with low intrinsic toxicity, thereby reducing reliance on conventional antibiotics.

In this context, traditional Chinese medicine (TCM) offers a promising reservoir for the discovery of new anti-infective leads, owing to its advantages of multi-component, multi-target mechanisms, abundant natural sources, relatively favorable safety profiles, and a lower tendency to induce drug resistance (Deng et al., 2025; Liang et al., 2025). Many TCM formulations exhibit dual antibacterial and anti-inflammatory activities, highlighting their unique therapeutic potential (Tsai et al., 2013; Qin et al., 2026; Fernandes et al., 2025). Clerodendrum cyrtophyllum Turcz., a plant of the Clerodendrum genus (Verbenaceae family), is a commonly used ethnic medicinal herb in China. Traditionally, it has been employed for clearing heat, detoxification, and treating various infectious diseases due to its purported antibacterial and anti-inflammatory properties (Huang et al., 2025; Ran, 2017) Accumulating pharmacological evidence has revealed that its rich flavonoid constituents possess significant antibacterial, anti-inflammatory, and antioxidant activities (Pei et al., 2025; Nguyen et al., 2020), indicating considerable antimicrobial potential.

Despite this promise, systematic research on total flavonoids from Clerodendrum cyrtophyllum Turcz. (TFC) remains limited. To bridge this knowledge gap and facilitate the development of this botanical resource, the extraction conditions for TFC were optimized, and the crude TFC was purified using D101 macroporous resin. Subsequently, the chemical profile of the purified TFC was characterized by LC–MS/MS. Furthermore, the antibacterial activity and underlying mechanism of TFC against S. aureus were investigated. Collectively, these findings provide an experimental foundation to explore the medicinal potential of TFC against S. aureus and promote the development and utilization of Clerodendrum cyrtophyllum Turcz.

2. Materials and methods

2.1. Reagents

The following reagents and materials were used in this study. Clerodendrum cyrtophyllum Turcz. was collected from Baxian Village Wild Herbal Workshop and authenticated as the stems and leaves of this species by Prof. Xiangpei Wang, School of Ethnic Medicine, Guizhou Minzu University, Guiyang, China. The active compound TFC, isolated/purified from Clerodendrum cyrtophyllum Turcz., was dissolved in dimethyl sulfoxide (DMSO; Ruixin Chemical Co., Ltd., Shanghai, China) to prepare a 5% (v/v) stock solution. D101 macroporous resin, erythromycin, and 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA) were purchased from Aladdin Biochemical Technology Co., Ltd. (Shanghai, China). Phosphate-buffered saline (PBS) was obtained from BKMAM Holdings Co., Ltd. (Hunan, China). LB agar plates were from Haibo Biotechnology Co., Ltd. (Qingdao, China). Rhodamine 123, p-nitrophenyl phosphate (pNPP), n-hexadecane, and rutin were supplied by Macklin Biochemical Co., Ltd. (Shanghai, China). 4′,6-diamidino-2-phenylindole (DAPI) was purchased from Lanjieke Technology Co., Ltd. (Beijing, China). A protein molecular weight marker was provided by Servicebio Technology Co., Ltd. (Wuhan, China). Unless otherwise stated, all chemicals and reagents were of analytical grade.

2.2. Bacterial strains and culture conditions

S. aureus used in this study was isolated from a dairy cow with clinical mastitis and characterized by molecular biology approaches (Pei et al., 2025). The isolate was stored in 20% glycerol at −80 °C until use. For each experiment, a glycerol stock was thawed, inoculated into Luria–Bertani (LB) broth, and cultured at 37 °C with agitation at 160 rpm for 18 h. An aliquot (100 μL) of this primary culture was then added to 10 mL of fresh LB broth and grown to mid-log phase (OD₆₀₀ ≈ 0.4–0.6). Cells were collected by centrifugation at 3500 × g for 5 min at 4 °C, washed twice with sterile phosphate-buffered saline (PBS), and resuspended in PBS for subsequent assays.

2.3. Determination of TFC content

The total flavonoid content was quantified by the aluminum nitrate-sodium nitrite colorimetric method (Tian et al., 2018), with rutin as the standard reference compound. Absorbance was measured at 510 nm using a UV–Vis spectrophotometer (model UV1802G, Tianjin Guanze Technology Co., Ltd., China), and a calibration curve was established as y = 10.275x + 0.0008 (R2 = 0.9995). After centrifugation of the Clerodendrum cyrtophyllum Turcz. extract (3,552 × g, 5 min), the supernatant was analyzed under the same colorimetric conditions. The TFC concentration (C) was calculated by substituting the absorbance value into the regression equation, and the extraction yield was determined using Equation 1:

Extraction Rate(%)=C×V×NM×100 (1)

where C is the mass concentration of total flavonoids in Clerodendrum cyrtophyllum Turcz (mg/mL); V is the volume of Clerodendrum cyrtophyllum Turcz. extract (mL); N is the dilution ratio; M is the mass of dry Clerodendrum cyrtophyllum Turcz. powder (mg).

2.4. BBD experimental design for TFC

2.4.1. Single-factor experimental design

Exactly 1.0 g of Clerodendrum cyrtophyllum Turcz. powder was weighed and transferred into a 50 mL round-bottom flask. Ethanol was used as the extraction solvent, reflux extraction was performed under predetermined conditions of ethanol concentration, solid-to-liquid ratio, temperature, and extraction time. Immediately following extraction, the hot mixture was filtered under reduced pressure. The resulting filtrate was centrifuged at 3552 × g for 5 min, and the supernatant was collected for subsequent determination of TFC content. Details of the single-factor experimental design are provided in Table 1.

Table 1.

Details of the single-factor experimental design.

Factor Ethanol concentration (%) Liquid-to-material ratio (g: ml) Extraction temperature (°C) Extraction time (min)
Ethanol concentration 50, 60, 70, 80, 90 1:20 60 60
Solid-to-liquid ratio 70 1:10, 1:15, 1:20, 1:25, 1:30 60 60
Extraction time 70 1:20 60 40, 60, 80, 100, 120
Extraction temperature 70 1:20 55, 65, 75, 85, 95 60

2.4.2. Optimization of extraction variables using BBD method

Based on the promising ranges identified in the single-factor experiments, the central (zero) level for each factor was determined. The high and low levels were then set equidistantly around the central point, resulting in three coded levels (−1, 0, and +1) for each factor in the response surface methodology (RSM) design (Table 2). Using ethanol concentration, solid-to-liquid ratio, extraction temperature, and extraction time as independent variables and the TFC yield as the response, a four-factor, three-level Box–Behnken design (BBD) was generated using Design Expert software (Version 13.0, Stat-Ease Inc., Minneapolis, MN, USA). This design comprised 29 experimental runs, including five center points for estimating pure error. A quadratic polynomial regression model (Equation 2) was fitted to the experimental data. Analysis of variance (ANOVA) was used to assess the statistical significance of the model and its terms. Additionally, two-dimensional contour plots and three-dimensional response surface plots were generated to visualize the interactive effects of the variables on the TFC yield.

Y=β0+∑i=1kβiXi+∑i=1kβiiXi2+∑i=1k∑j=1kβijXiXj (2)
Table 2.

Factors and levels of response surface experiment.

Level A: Ethanol concentration (%) B: Solid-to-Liquid ratio (g: mL) C: Extraction temperature (°C) D: Extraction time (min)
−1 60 20 55 80
0 70 25 65 100
1 80 30 75 120

Where Y represents the measured response variables, β0 stands for the constant. βi, βii, and βij represent the linear, quadratic and interaction coefficient, respectively. Xi and Xj are the levels of independent variables, and k denotes the number of variables.

2.4.3. Validation of optimal process conditions for TFC

The extraction of TFC using optimized independent extraction variables was carried out in triplicate (n = 3), and the experimental yield was compared with predicted values for model validation.

2.5. TFC purification

D101 macroporous adsorption resin was soaked in 95% (v/v) ethanol for 24 h to achieve sufficient full swelling. The resin was then sieved through a 60-mesh sieve and rinsed repeatedly with deionized water until the eluate became clear without any white turbidity. Subsequently, the resin was sequentially treated with 4% (v/v) HCl and 4% (w/v) NaOH solution for 4 h, followed by thorough rinsing with deionized water until the eluate reached neutrality (pH = 7.0). The pretreated resin was stored for subsequent use. Crude TFC prepared under the optimized extraction conditions were concentrated using a rotary evaporator, then redissolved in sterile distilled water to form a sample solution at a concentration of 2 mg/mL. The solution was loaded onto a chromatography column at a flow rate of 1.5 BV·h−1. After sample loading, the column was sequentially eluted with 4 bed volumes (BV) of distilled water and 3 BV of 50% (v/v) ethanol solution at a flow rate of 2 BV·h−1. The eluate was collected, concentrated under reduced pressure to dryness, yielding crude TFC powder. The crude TFC powder was mixed with 95% (v/v) ethanol at a solid-to-liquid ratio of 1:10 (g: mL), followed by ultrasonication at 100 W and 45 °C for 5 min. After complete dispersion and dissolution, the mixture was centrifuged at 3552 × g for 5 min. The supernatant was collected and evaporated to dryness under reduced pressure using a rotary evaporator, yielding a brownish-yellow TFC powder. The obtained TFC was stored in an amber, light-protected wide-mouth reagent bottle for subsequent experiments.

2.6. TFC purity analysis

The purity of TFC was calculated based on its absorbance measured according to Section 2.1. The absorbance was converted to concentration (C) via the rutin standard curve, and the purity was derived using Equation 3:

Purity(%)=C×V×Nm×100 (3)

where C is the mass concentration of TFC in the purified assay solution (mg/mL); V is the final volume of the purified TFC solution after dilution to a fixed volume (mL); N is the dilution factor; m is the mass of the dried purified TFC (mg).

2.7. Analysis of TFC components

The analysis of TFC components was performed using LC–MS/MS, and all detection procedures were conducted by Beijing Keyangou Technology Co., Ltd. China. Briefly, 50 mg of TFC was extracted with 75% aqueous methanol via bead homogenization followed by 30 min of ultrasonication. After centrifugation at 17,000 × g for 10 min at 20 °C, the supernatant was filtered through a 0.22 μm PTFE syringe filter prior to LC–MS/MS analysis. Chromatographic separation was performed on an HSS T3 column (100 × 2.1 mm, 1.8 μm) maintained at 40 °C with a flow rate of 400 μL/min. The mobile phases consisted of water containing 0.1% formic acid (A) and acetonitrile containing 0.1% formic acid (B), with a 30-min gradient elution program (Table 3). Information-dependent acquisition (IDA) was employed for MS data collection, where the top 15 intense precursor ions (m/z range: 50–1,200; intensity threshold: >100 cps) were fragmented at a collision energy of 30 eV. Standard electrospray ionization (ESI) source parameters were applied as follows: source temperature, 550 °C; GS1/GS2 gas pressure, 60 psi; curtain gas pressure, 35 psi; spray voltage, +5,500 V (positive ion mode) and −4,500 V (negative ion mode). Raw LC–MS/MS data were converted to abf format using the Analysis Base File Converter software. Peak detection, peak alignment, and metabolite annotation were performed using MS-DIAL version 4.6. Tentative metabolite identification was achieved by matching experimental MS/MS spectra against public spectral libraries, including METLIN, MassBank (Japanese and European repositories), MoNA (MassBank of North America), and HMDB database (version 6.0). The key data processing parameters were set as follows: the accurate mass tolerances were 0.01 Da for MS and 0.05 Da for MS, with a cutoff identification score of 60%; the retention time tolerance was 0.2 min, and the MS mass tolerance for peak matching was 0.01 Da. Only compounds with positive dot product, reverse dot product, and fragment presence percentage values, together with a mass error of <5 ppm, were defined as high-confidence annotations.

Table 3.

Mobile phase elution gradient.

Time (min) Flow-rate (μL/min) A (%) B (%)
0.00 400 95 5
1.50 400 95 5
2.50 400 90 10
14.00 400 60 40
24.00 400 5 95
27.00 400 5 95
27.10 400 95 5
30.00 400 95 5

Mobile phase A: water with 0.1% formic acid; Mobile phase B: acetonitrile with 0.1% formic acid.

2.8. Antimicrobial activity

2.8.1. Measurement of bacteriostatic zone diameter

The bacteriostatic zone diameter of TFC was evaluated by the Oxford cup method (Wang L. et al., 2025). S. aureus cultures in the logarithmic growth phase were diluted 100-fold with sterile distilled water. Then, 100 μL of the diluted bacterial suspension was evenly spread onto the surface of an LB nutrient agar plate using a sterile spreader. Three sterile Oxford cups were placed equidistantly on the inoculated plate and loaded with 150 μL of TFC sample solutions at 50 mg/mL, 100 mg/mL, and 150 mg/mL, respectively. An equal volume of DMSO was used as the negative control, and erythromycin (100 μg/mL) served as the positive control. After incubation at 37 °C for 24 h, the diameters of the transparent inhibition zones around each cup were precisely measured. Data are presented as mean ± standard deviation.

2.8.2. Determination of MIC and MBC

MIC Determination: The MIC of TFC was determined using a standard two-fold broth microdilution method (Kashyap et al., 2025). Briefly, TFC was serially diluted in sterile LB broth in a 96-well plate to final concentrations of 25, 12.5, 6.25, 3.125, 1.562, 0.781, 0.390, 0.195, and 0.097 mg/mL. Each well contained 100 μL of the diluted TFC solution. A logarithmic-phase culture of S. aureus was adjusted to 1.0 × 107 CFU/mL in LB broth, and 100 μL of this bacterial suspension was added to each well. Wells containing erythromycin (positive control), an equal volume of DMSO (negative control), and sterile LB broth (blank control) were included. The plate was incubated at 37 °C for 24 h, after which turbidity in each well was assessed visually. The MIC was recorded as the lowest concentration of TFC that completely inhibited visible bacterial growth.

MBC Determination: Based on the results of the MIC assay, 100 μL of the culture broth from the clear well (indicating no visible growth) and the well corresponding to 1/2 × MIC was collected, evenly spread on LB nutrient agar plates, and incubated at 37 °C for 24 h. The MBC was defined as the lowest sample concentration that resulted in a ≥ 99.9% reduction in colony count on the agar plates. In general, a sample is considered bactericidal if the MBC value is no greater than four times its MIC value (Barry and Lasner, 1979).

2.8.3. Growth curve

A logarithmic-phase S. aureus suspension was adjusted to 1.0 × 107 CFU/mL. TFC was added to S. aureus suspension at final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC, while a group without TFC served as the blank control. The cultures were incubated at 37 °C with shaking at 150 rpm for 24 h. Samples were collected every 2 h, and the optical density at 600 nm (OD₆₀₀) was measured. Growth curves for S. aureus were plotted using GraphPad Prism 8.0, with time as the x-axis and OD₆₀₀ as the y-axis.

2.9. Antibacterial mechanism

2.9.1. Cell surface hydrophobicity test

The cell surface hydrophobicity (CSH) of S. aureus was evaluated by the microbial adhesion to hydrocarbons (MATH) assay as previously described (Evans et al., 2022). Briefly, S. aureus was treated as outlined in Section 2.2. TFC was added to S. aureus suspension at final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC, while S. aureus suspension without TFC served as an untreated control. After incubation at 37 °C for 4 h, 1 mL of each culture was transferred to a clean tube, and its OD₆₀₀ was measured and recorded as A₀. Then, 400 μL of n-hexadecane was accurately added to each tube. The mixture was vigorously vortexed for 1 min to ensure thorough contact between the bacterial cells and the hydrocarbon phase, and then incubated at 37 °C for 15 min to achieve complete phase separation. After stable stratification, the OD₆₀₀ of the lower aqueous phase was measured and defined as A. The CSH, expressed as the bacterial adhesion rate to n-hexadecane, was calculated using Equation 4:

CSH(%)=Ao−AAo×100 (4)

Where A₀ is the OD600 value of the bacterial suspension prior to mixing with n-hexadecane, and A is the OD600 value of the aqueous phase after mixing with n-hexadecane and allowing separation by settling.

2.9.2. Measurement of TFC on alkaline phosphatase (AKP) activity of S. aureus

AKP activity was measured using the pNPP assay as previously described (Pei et al., 2025). S. aureus was treated as outlined in Section 2.2. Bacterial suspensions were supplemented with TFC to achieve final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC. Samples without TFC treatment served as the untreated control. All samples were incubated at 37 °C with shaking at 130 rpm. At 0.5 h intervals (up to 3 h), 3 mL aliquots were withdrawn and centrifuged at 3000 × g for 10 min. The supernatants were collected and mixed with 0.3 mL of 1 mg/mL pNPP solution. After gentle vortexing, the mixtures were incubated in the dark at 37 °C for 30 min. The reaction was terminated by adding 0.12 mL of 1 mol/L NaOH. The absorbance at 405 nm (OD₄₀₅) was measured using a UV–Vis spectrophotometer. All experiments were performed in triplicate.

2.9.3. Membrane permeability assays

The effect of TFC on the membrane permeability of S. aureus was evaluated by quantifying the release of protein and nucleic acid leakage. S. aureus was treated as outlined in Section 2.2. Bacterial suspensions were supplemented with TFC to achieve final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC. Samples without TFC treatment served as the untreated control. All samples were incubated in a shaking incubator at 37 °C and 130 rpm for 6 h. Aliquots were collected at 1.5-h intervals and centrifuged at 1400 × g for 10 min at 4 °C to prepare cell-free supernatants. The absorbance of each supernatant at 260 nm (OD260) and 280 nm (OD280) was measured using a UV–Vis spectrophotometer to assess the levels of released nucleic acids and proteins, respectively. All measurements were performed in triplicate.

2.9.4. Measurement of bacterial membrane potential

To assess the effect of TFC on bacterial membrane integrity and energy metabolism, changes in the membrane potential of S. aureus were determined using the fluorescent probe Rhodamine 123 as described previously (Wang Y. et al., 2025). Briefly, S. aureus was treated as outlined in Section 2.2. Bacterial suspensions were supplemented with TFC to achieve final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC. Samples without TFC treatment served as the untreated control. Rhodamine 123 stock solution (1 mg/mL) was added to each sample to a final concentration of 2 μg/mL. After incubation in the dark at 37 °C for 30 min to allow dye uptake, the cells were pelleted by centrifugation (1,400 × g, 5 min, 4 °C) and washed twice with PBS to remove unbound dye. The stained cell pellets were resuspended in PBS and transferred to a black 96-well plate. Fluorescence intensity was measured using a microplate reader with excitation and emission wavelengths set at 480 nm and 530 nm, respectively. All experiments were performed in triplicate.

2.9.5. Intracellular nucleic acids assay

The extent of membrane permeability disruption induced by TFC was further assessed by measuring the fluorescence intensity of DAPI bound to intracellular nucleic acids (Gildea et al., 2022). S. aureus was treated as outlined in Section 2.2. Bacterial suspensions were supplemented with TFC to achieve final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC. Samples without TFC treatment served as the untreated control. Following incubation at 37 °C with shaking (180 rpm) for 24 h, the cells were collected by centrifugation at 5590 × g for 5 min, washed three times with PBS, and resuspended. A 0.4 mL aliquot of the cell suspension was mixed with 1.2 mL of DAPI staining solution to achieve a final concentration of 0.8 μg/mL. After incubation in the dark at 37 °C with gentle shaking for 10 min, fluorescence intensities for DAPI-DNA complexes (λex = 364 nm, λem = 460 nm) and DAPI-RNA complexes (λex = 400 nm, λem = 500 nm) were measured using a microplate reader. All experiments were performed in triplicate.

2.9.6. Intracellular protein assay

Sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) was performed to evaluate the effect of TFC on the total protein profile of S. aureus. S. aureus isolate was treated as outlined in Section 2.2 and cultured to mid-log phase. S. aureus suspensions were supplemented with TFC to achieve final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC; samples without TFC treatment served as the untreated control. All cultures were incubated with shaking (150 rpm) at 37 °C. Aliquots were harvested at 4, 16, and 24 h, and cells were pelleted by centrifugation at 5,600 × g for 5 min at 4 °C. The pellets were washed twice with sterile PBS, resuspended in 50 μL of sterile deionized water and 200 μL of 2 × Laemmli reducing sample buffer (125 mM Tris–HCl pH 6.8, 4% (w/v) SDS, 20% (v/v) glycerol, 0.02% (w/v) bromophenol blue, 10% (v/v) β-mercaptoethanol), and vortexed vigorously. After boiling at 100 °C for 10 min, samples were centrifuged at 8,000 × g for 10 min to remove debris. For electrophoretic separation, the supernatant (15 μL per lane) was loaded onto a 5% stacking gel over a 12% separating gel using a Laemmli discontinuous buffer system. The gel was run in 1 × Tris–glycine–SDS running buffer (25 mM Tris, 192 mM glycine, 0.1% (w/v) SDS, pH 8.3) under constant voltage: 80 V through the stacking gel, then increased to 120 V after the bromophenol blue front entered the separating gel, until the dye front reached the bottom. After electrophoresis, the gel was fixed in 50% methanol / 10% acetic acid for 30 min, stained for 4 h in 0.1% Coomassie Brilliant Blue R-250 dissolved in 45% methanol / 10% acetic acid, and destained in 10% methanol / 10% acetic acid with several changes until clear background was obtained. Gel images were captured using a gel documentation system.

2.9.7. Determination of reactive oxygen species (ROS)

The intracellular ROS levels in S. aureus following TFC treatment were dynamically monitored using the fluorescent probe DCFH-DA (Shivaprasad et al., 2021). S. aureus was treated as outlined in Section 2.2. The bacterial suspension was then incubated with 1 μL DCFH-DA for 20 min at 37 °C in the dark. After incubation, the cells were pelleted by centrifugation (1,400 × g, 5 min, 4 °C) and washed twice with PBS to thoroughly remove extracellular dye. The stained cells were resuspended in fresh PBS. Subsequently, TFC was added to achieve final concentrations of 1/2 × MIC, 1 × MIC, and 2 × MIC. A sample without TFC served as the untreated control. Aliquots of each treatment were transferred to a black 96-well microplate and incubated at 37 °C. Fluorescence intensity was measured every 30 min using a microplate reader at an excitation wavelength of 488 nm and emission wavelength of 525 nm. All experiments were performed with three independent biological replicates.

2.9.8. Scanning electron microscopy (SEM) assay

SEM was performed following the method described by Wan et al. (2021) with slight modifications and completed by Chengdu Lilai Biotechnology Co., Ltd. China. Briefly, mid-logarithmic-phase S. aureus suspensions were prepared as outlined in Section 2.2 and treated with TFC at final concentrations of 0 × MIC, 1 × MIC, and 2 × MIC. After incubation at 37 °C with shaking at 130 rpm for 6 h or 12 h, bacterial cells were harvested by centrifugation at 5000 × g for 5 min. The pellets were washed twice with PBS and fixed overnight with 2% glutaraldehyde at 4 °C. Following three rinses with PBS, samples were post-fixed with 1% osmium tetroxide (OsO₄) in the dark for 2 h. The fixed samples were then washed three times with ultrapure water (10 min per wash) and dehydrated through a graded ethanol series (30, 50, 70, 90, and 100%; three changes of 100% ethanol), with each step lasting 15 min. An aliquot of the sample suspension was dropped onto a sterile glass coverslip, followed by critical point drying with CO₂. The dried coverslips were mounted onto specimen stubs using conductive adhesive, sputter-coated with gold using an ion sputter coater, and examined using a field-emission scanning electron microscope for morphological examination and image acquisition.

2.9.9. Determination of intracellular adenosine triphosphate (ATP) concentrations

Intracellular ATP levels in S. aureus were determined according to Luo et al. (2022). Briefly, mid-logarithmic-phase S. aureus suspensions (1.0 × 107 CFU/mL) were treated with TFC at final concentrations of 1/2 × MIC, 1 × MIC, or 2 × MIC, or left untreated as a control. After incubation at 37 °C with shaking at 130 rpm for 30 min, bacterial cells were harvested by centrifugation at 5000 × g for 5 min. Intracellular ATP concentrations were then measured using a commercial ATP Assay Kit (Nanjing Jiancheng Bioengineering Institute, Nanjing, China) according to the manufacturer’s instructions.

2.10. Statistical analysis

All experimental data were preprocessed and expressed as mean ± standard deviation (SD), with error bars representing SD. Statistical analyses were performed using GraphPad Prism 8.0 software. Comparisons among multiple groups were conducted using one-way analysis of variance ANOVA. All experiments were performed independently in at least three biological replicates. Statistical significance was defined as follows: *p < 0.05, **p < 0.01, and ***p < 0.001.

3. Results

3.1. BBD experimental design for TFC

3.1.1. Results of single-factor experiment

The effects of four independent extraction parameters on TFC yield are presented in Figure 1. The extraction yield of TFC as a function of four independent parameters is shown in Figure 1. The yield increased with increasing ethanol concentration from 50 to 70%, reaching a maximum of approximately 4.9% at 70% (Figure 1A). Beyond this optimum, a further increase to 90% led to a gradual decline in yield to 4.2%; Varying the solid-to-liquid ratio significantly affected the extraction efficiency (Figure 1B). The yield steadily increased as the ratio changed from 1:10 to 1:25 (g: mL), attaining an optimum of about 4.9% at 1:25. A further increase to 1:35 resulted in a slight reduction in yield to roughly 4.7%; Extraction temperature also showed a pronounced effect (Figure 1C). The yield rose sharply from 55 °C to 65 °C, peaking at 4.79%. A subsequent increase to 100 °C caused a consistent decrease, with the yield falling to approximately 4.4%; Similarly, extraction time markedly influenced the yield (Figure 1D). An increase from 40 min to 100 min raised the yield from 3.6% to a maximum of 4.82%. However, extending the extraction to 120 min reduced the yield to 4.6%.

Figure 1.

Four line graphs labeled A to D display the effect of ethanol concentration, solid-to-liquid ratio, temperature, and extraction time on TFC yield percentage, showing optimal TFC yield at moderate values for each parameter, with error bars indicating variability.

Effects of ethanol concentration, solid–liquid ratio, temperature, and extraction time on the yield of TFC. (A) Ethanol concentration; (B) Solid-to-liquid ratio; (C) Temperature; (D) Time.

Based on these results, the following preliminary optimal conditions were identified: ethanol concentration of 70%, solid-to-liquid ratio of 1:25 (g: mL), extraction temperature of 65 °C, and extraction time of 100 min. These conditions defined the central points for factor level selection in subsequent RSM optimization experiments. The aforementioned ~4.9% maxima under individual single-factor elevation represent isolated baseline yields without multivariate synergy, and thus cannot reach the coordinated optimum revealed by the subsequent RSM-BBD model.

3.1.2. Response surface optimization results and analysis

3.1.2.1. Model development and analysis of variance

Based on the levels and factors defined in Table 2, the 29 experimental runs designed by RSM-BBD and their corresponding results are presented in Table 4. The results were analyzed using Design-Expert 13 software. After regression fitting, the following quadratic polynomial regression equation was obtained:

Y=6.528+0.146667A+0.108333B−0.259167C+0.1675D−0.045AB+0.2AC+0.12AD+0.255BC−0.105BD−0.2425CD−1.11192A2–1.09442B2–1.11317C2–0.850667D2.
Table 4.

Response surface experiment results.

No. A: ethanol concentration (%) B: solid-to-liquid ratio (g: mL) C: extraction temperature (°C) D: extraction time (min) TFC yield (%)
1 80 20 65 100 4.38
2 80 25 75 100 4.42
3 80 25 55 100 4.52
4 70 20 55 100 4.77
5 70 20 65 80 4.2
6 60 25 65 80 4.42
7 60 25 55 100 4.59
8 70 25 65 100 6.68
9 70 30 75 100 4.43
10 70 20 75 100 3.7
11 60 20 65 100 3.99
12 60 25 75 100 3.69
13 70 25 65 100 6.5
14 60 30 65 100 4.3
15 70 25 65 100 6.59
16 70 20 65 120 4.76
17 70 30 65 80 4.62
18 80 30 65 100 4.51
19 70 30 55 100 4.48
20 70 30 65 120 4.76
21 60 25 65 120 4.51
22 80 25 65 120 5
23 80 25 65 80 4.43
24 70 25 55 80 4.38
25 70 25 75 120 4.21
26 70 25 65 100 6.42
27 70 25 75 80 4.37
28 70 25 55 120 5.19
29 70 25 65 100 6.45

The variance and significance analysis results of the above regression model are shown in Table 5. ANOVA was performed on the established quadratic polynomial model to assess its significance. The F-value and p-value were used to determine whether the regression model is statistically significant. Meanwhile, the lack-of-fit test was conducted to examine whether the model omitted systematic errors or important structural terms. In general, a larger F-value and a smaller p-value for a term indicate a more significant effect on TFC yield. The F-value of the present model is 328.00 with a p-value of < 0.001, demonstrating that the regression model is highly significant overall and can effectively explain the relationship between the factors and the response. The lack-of-fit F-value is 0.1462 with a p-value of 0.9936 (> 0.05), which is not significant, indicating that the model fits the data well and the error is mainly due to random variation rather than systematic bias. The coefficient of determination R2 is 0.9970, meaning that the model explains 99.70% of the variation in the response, reflecting an excellent fit. The adjusted R2 (Adj-R2) is 0.9939, and the predicted R2 (Pred-R2) is 0.9918. The close agreement between Adj-R2 and Pred-R2, with a difference of less than 0.2, suggests that the model possesses high explanatory power and good predictive capability. The adequate precision ratio is 58.6465, which is well above the acceptable threshold of 4, confirming that the model provides sufficient signal for reliable analysis and navigation within the design space. Significance analysis of individual terms reveals that the linear terms A (ethanol concentration), B (solid-to-liquid ratio), C (temperature), and D (extraction time), the interaction terms AC, AD, BC, BD, and CD, and all quadratic terms A2, B2, C2, and D2 have significant effects on the response (TFC yield) (p < 0.05). The interaction term AB is not significant (p = 0.2010 > 0.05). Based on the F-values, the order of influence of the factors on the yield is: C (extraction temperature) > D (extraction time) > A (ethanol concentration) > B (solid-to-liquid ratio).

Table 5.

ANOVA results of the regression model.

Source Sum of squares df Mean square F-value P-value Significance notation
Model 20.66 14 1.48 328.00 < 0.0001 ***
 A 0.2581 1 0.2581 57.38 < 0.0001 ***
 B 0.1408 1 0.1408 31.31 < 0.0001 ***
 C 0.8060 1 0.8060 179.17 < 0.0001 ***
 D 0.3367 1 0.3367 74.84 < 0.0001 ***
 AB 0.0081 1 0.0081 1.80 0.2010 ns
 AC 0.1600 1 0.1600 35.57 < 0.0001 ***
 AD 0.0576 1 0.0576 12.80 0.0030 **
 BC 0.2601 1 0.2601 57.82 < 0.0001 ***
 BD 0.0441 1 0.0441 9.80 0.0074 **
 CD 0.2352 1 0.2352 52.29 < 0.0001 ***
 A2 8.01 1 8.01 1779.55 < 0.0001 ***
 B2 7.75 1 7.75 1723.92 < 0.0001 ***
 C2 8.02 1 8.02 1783.55 < 0.0001 ***
 D2 4.68 1 4.68 1040.98 < 0.0001 ***
Residual 0.0630 14 0.0045
Lack of fit 0.0169 10 0.0017 0.1462 0.9936 ns
Pure error 0.0461 4 0.0115
Cor total 20.72 28
 R2 0.9970
 Adj. R2 0.9939
 Pred-R2 0.9918
 Adeq precision 58.6465

**, indicates significant (p < 0.01); ***, indicates highly significant (p < 0.001); ns, indicates not significant (p ≥ 0.05).

3.1.2.2. Graphical analysis of factor interactions

In response surface methodology, response surface plots and contour plots serve as essential visualization tools, which can intuitively illustrate the effects of individual factors on TFC yield and their interactions. The geometric shape of the response surface, as well as the steepness and curvature of the surface, reflect the strength of each variable’s influence on the response and the significance of their interactive effects. A steeper slope of the response surface along a given factor direction indicates a greater influence of that factor on TFC yield, namely a more significant main effect; in contrast, a gentle slope suggests a weaker effect. Analysis of the three-dimensional response surface plots reveals that the overall surface exhibits a downward-opening, convex “hill-like” structure, indicating the presence of a distinct maximum point for the response within the experimental design range. Meanwhile, the contour plot, as a two-dimensional projection of the three-dimensional response surface, clearly and visually expresses the interaction between variables. When the contour lines show a distinct elliptical shape, it suggests a significant interaction between the corresponding two factors; conversely, near-circular contours imply a nonsignificant interaction.

As shown in Figure 2, comparative analysis of the six sets of three-dimensional response surfaces and their corresponding contour plots indicates that the interaction effects are more pronounced for the pairs AC (B1), AD (C1), BC (D1), BD (E1), and CD (F1). These five interaction groups exhibit noticeable curvature changes in the response surfaces, suggesting that their interactive effects have a significant impact on TFC yield. The corresponding contour plots (B2, C2, D2, E2, F2) display clear elliptical shapes, further confirming from a geometric perspective that significant interactions exist between these factors. In contrast, the response surface for the AB pair (A1) is relatively flat with little undulation, and its corresponding contour plot (A2) is nearly circular, reflecting a weaker interaction between these two factors and a relatively limited influence on TFC yield. The visual interpretations based on the morphological features of the response surfaces and contour plots are consistent with the significance test results of the interaction terms in the ANOVA. Together, they demonstrate that within the selected experimental design range, the influences of different factors on the TFC extraction process vary considerably, with the interaction terms AC, AD, BC, BD, and CD being particularly prominent, thereby providing clear priority directions for subsequent process optimization.

Figure 2.

Six pairs of scientific graphs and heat maps show response surface and contour plots analyzing extraction yield (%) in relation to pairs of variables including ethanol concentration, solid-to-liquid ratio, extraction temperature, and extraction time. Each left figure (A1, B1, C1, D1, E1, F1) displays a 3D response surface plot, while each right figure (A2, B2, C2, D2, E2, F2) presents the corresponding heat map with color gradients and contour lines indicating predicted extraction yield for the experimental parameter combinations.

Three-dimensional response surfaces and two-dimensional contour maps depicting the interactive effects of factors on TFC yield. (A) Ethanol concentration and solid-to-liquid ratio; (B) extraction temperature and ethanol concentration; (C) ethanol concentration and extraction time; (D) extraction temperature and solid-to-liquid ratio; (E) extraction time and solid-to-liquid ratio; (F) extraction time and extraction temperature.

3.1.2.3. Validation of the response surface model

The normal probability plot of residuals for the response surface model (Figure 3A) shows that the externally studentized residuals generally follow the theoretical normal distribution line, with only minor outliers present. This indicates that the model residuals satisfy the assumption of normality, and the systematic error is random without significant model misspecification. In the predicted versus actual values scatter plot (Figure 3B), the data points are closely distributed along both sides of the diagonal line (y = x), demonstrating high consistency especially within the main response range (TFC yield approximately 3 to 7%). This confirms that the model fits the experimental data well and exhibits high predictive accuracy. Together, these results validate the statistical soundness and predictive reliability of the response surface model developed in this study.

Figure 3.

Panel A presents a normal probability plot of externally studentized residuals for TFC yield percentages, with data points colored from blue to red by yield value. Panel B shows a scatterplot comparing predicted versus actual TFC yield percentages, also color-coded by yield, with a reference line indicating perfect prediction.

Diagnostic plots for the regression model of TFC yield. (A) Normal probability plot of residuals; (B) Predicted vs. actual values scatter plot.

3.1.2.4. Validation of optimal process conditions for TFC

Based on the analysis performed with Design Expert 13 software, the predicted optimum extraction conditions for TFC were determined as follows: ethanol concentration 70.6147%, extraction temperature 63.7985 °C, solid-to-liquid ratio 1:25.1408 (g: mL), and extraction time 102.362 min. Under these conditions, the predicted TFC extraction yield was 6.55953%. To ensure practical operability in the laboratory, the above conditions were slightly adjusted to: ethanol concentration 70%, extraction temperature 64 °C, solid-to-liquid ratio 1:25 (g: mL), and extraction time 102 min. Three independent verification experiments conducted under the adjusted conditions yielded an average TFC extraction rate of 6.48% ± 0.58, which showed no significant difference from the predicted value. This result indicates that the regression model fits the experimental data well and that the optimized conditions are reliable.

3.1.3. Purity evaluation

The final product obtained through the aforementioned procedure and purified by D101 macroporous resin. A standard calibration curve was constructed using rutin, yielding the linear equation (Y = 10.275X + 0.0008, R2 = 0.9994). Based on this curve, the maximum extraction yield of TFC was calculated to be 6.48% ± 0.58, with a purity of 76%. These results demonstrate that the purification process established in this study enables the efficient enrichment of flavonoids with high purity from Clerodendrum cyrtophyllum Turcz., making the obtained TFC suitable for subsequent bioactivity investigations and pharmaceutical development.

3.2. Identification of flavonoid compounds of TFC by LC–MS/MS

The components of TFC were identified via LC–MS/MS. A total of 35 and 60 flavonoids were separately identified from TFC in negative and positive ESI mode, respectively (Tables 6, 7). Notably, 10 components, including andrographidin B, demethoxycentaureidin 7-O-rutinoside, jaceoside, neodiosmin, cirsimaritin, isorhamnetin 3-galactoside, pectolinarin, velutin, iridin, and chrysoeriol, were consistently detected in both ESI modes. Collectively, a total of 85 flavonoid components were identified in TFC. The major abundant flavonoid components of TFC, reported as relative peak area abundance rather than absolute quantification, included andrographidin B (22.78%), citrusunshin A (16.00%), eupatilin (7.86%), jacein (5.80%), tricin methyl ether (5.20%), and rhamnazin (4.66%), with these values expressed as the percentage of each component’s peak area relative to the total integrated peak area of all identified flavonoids in the TIC. Representative total ion chromatograms under positive- and negative-ion modes, together with the MS/MS spectra of the six aforementioned flavonoids, are presented in Figure 4, where the six aforementioned flavonoids are labelled near their approximate chromatographic peak regions.

Table 6.

Negative ESI-MS/MS identification of flavonoids in purified TFC.

No. Title RT (min) Formula Precursor m/z Theoretical m/z PPM Major fragment ions
1 Vicenin 2 6.86 C27H30O15 593.1511 593.1512 0.1669 593.1534
2 Tomentosanol A 5.98 C26H30O6 437.1971 437.1970 0.3111 135.0264
3 Gossypin 6.90 C21H20O13 479.0833 479.0831 0.3778 161.0237
4 Maritimein 10.59 C21H20O11 447.0931 447.0933 0.4227 285.0402
5 Pectolinarin 10.03 C29H34O15 621.1829 621.1825 0.6455 621.1856
6 Cirsiliol 14.98 C17H14O7 329.0669 329.0667 0.6716 299.0194
7 Tectoridin 10.38 C22H22O11 461.1086 461.1089 0.7352 461.1103
8 Jaceidin 15.40 C18H16O8 359.0768 359.0772 1.2365 329.0328
9 IRIDIN 11.53 C24H26O13 521.1294 521.1301 1.2837 344.0529
10 Demethoxycentaureidin 7-O-rutinoside 11.67 C29H34O16 637.1765 637.1774 1.4345 343.0825
11 Lepidoside 14.52 C26H28O14 563.1398 563.1406 1.4810 313.0755
12 Velutin 14.75 C17H14O6 313.0713 313.0718 1.4821 255.0306
13 Gnaphaliin 11.99 C17H14O6 313.0713 313.0718 1.4821 283.025
14 Thermopsoside, crotonoyl 14.56 C26H26O12 529.136 529.1352 1.5988 529.1413
15 skullcapflavone II 17.02 C19H18O8 373.0935 373.0929 1.6243 343.0437
16 Odoratin 18.36 C17H14O6 313.0712 313.0718 1.8015 255.0328
17 Isorhamnetin 3-galactoside 11.09 C22H22O12 477.1029 477.1039 1.9996 315.0499
18 eriocitrin 6.27 C27H32O15 595.1656 595.1668 2.0986 595.1676
19 Neoliquiritin 1.16 C21H22O9 417.1182 417.1191 2.1792 417.1002
20 Dihydrohesperetin-7-O-neohesperidoside 9.23 C28H36O15 611.1968 611.1981 2.2071 197.0543
21 Jaceoside 10.63 C23H24O12 491.1208 491.1195 2.6389 491.1196
22 Quercetin 3-(2-xylosylrhamnoside) 8.95 C26H28O15 579.1339 579.1355 2.8473 417.1054
23 Neodiosmin 8.39 C28H32O15 607.1686 607.1668 2.8839 225.0814
24 Cirsimaritin 16.76 C17H14O6 313.0708 313.0718 3.0792 283.0248
25 Kaempferol 3-O-sophoroside 8.29 C27H30O16 609.1442 609.1461 3.1421 447.1156
26 Andrographidin B 11.83 C23H24O12 491.1211 491.1195 3.2497 329.0689
27 Citrusunshin A 12.30 C25H28O14 551.1425 551.1406 3.3857 343.0856
28 Eupatilin 12.30 C18H16O7 343.0835 343.0823 3.4132 313.0354
29 Kaempferol-3-O-galactoside-7-O-rhamnoside 9.29 C27H30O15 593.1534 593.1512 3.7107 447.1152
30 Chrysoeriol 11.55 C16H12O6 299.055 299.0561 3.7251 284.0316
31 7-GlcA tricin 10.69 C23H22O13 505.1008 505.0988 4.0210 314.0418
32 Puerariaglycoside 3 13.71 C22H22O10 445.1161 445.1140 4.6640 152.0129
33 Cynaroside 8.98 C21H20O11 447.0912 447.0933 4.6724 285.0431
34 Isorhamnetin-3-O-rutinoside 6.40 C28H32O16 623.1647 623.1618 4.7115 579.1694
35 Luteolin 12.63 C15H10O6 285.0391 285.0405 4.7853 133.0297

Table 7.

Positive ESI-MS/MS identification of flavonoids in purified TFC.

No. Title RT (min) Formula Precursor m/z Theoretical m/z PPM Major fragment ions
1 Baicalin 10.10 C21H18O11 447.0922 447.0922 0.0201 271.06233
2 Isoshaftoside 12.62 C26H28O14 565.1552 565.1552 0.0248 345.09894
3 3-Hydroxy-6,3′,4′-trimethoxyflavone 12.69 C18H16O6 329.1020 329.1020 0.1033 329.10243
4 Epimedin C 12.92 C39H50O19 823.3019 823.3020 0.1081 823.30449
5 Glabranin 22.27 C20H20O4 325.1434 325.1434 0.1107 163.04168
6 Acacetin-7-O-neohesperidoside 13.88 C28H32O14 593.1865 593.1866 0.1922 345.09677
7 3-Hydroxy-7,8,3′-trimethoxyflavone 19.85 C18H16O6 329.1020 329.1019 0.2005 329.10222
8 Jaceoside 9.24 C23H24O12 493.1341 493.1342 0.2920 331.08255
9 Capreoside 9.95 C27H30O15 595.1658 595.1655 0.4217 301.07209
10 5-Hydroxy-2′,4′,7,8-Tetramethoxyflavone 18.75 C19H18O7 359.1125 359.1127 0.4706 359.11342
11 Spinosin B 12.60 C38H40O18 785.2287 785.2283 0.5680 345.09643
12 Pectolinarigenin 13.58 C17H14O6 315.0863 315.0865 0.5840 315.08201
13 Pectolinarin 8.52 C29H34O15 623.1971 623.1975 0.7205 147.04497
14 Axillarin 10.90 C17H14O8 347.0761 347.0764 0.7318 347.10583
15 (.+/−.)-Medicarpin 7.40 C16H14O4 271.0965 271.0967 0.7894 165.07201
16 Hesperidin methyl chalcone 8.43 C29H36O15 625.2127 625.2132 0.7981 147.04507
17 haploside D 10.86 C30H34O18 683.1818 683.1824 0.8841 345.09808
18 (−)-Epigallocatechin 9.39 C15H14O7 307.0812 307.0809 1.0779 163.03958
19 3,5,6,7,8,3′,4’-Heptamethoxyflavone 4.58 C22H24O9 433.1493 433.1488 1.1797 433.15262
20 Baicalin methyl ester 8.70 C22H20O11 461.1078 461.1084 1.2123 163.0397
21 Cirsimaritin 11.88 C17H14O6 315.0863 315.0867 1.2187 315.08969
22 Isorhamnetin 3-galactoside 11.02 C22H22O12 479.1184 479.1178 1.2648 317.06748
23 Dehydrodiisoeugenol 8.09 C20H22O4 327.1591 327.1595 1.2654 163.03603
24 Licoflavone A 13.67 C20H18O4 323.1278 323.1273 1.5040 291.1018
25 Chrysoeriol 14.62 C16H12O6 301.0707 301.0702 1.5478 301.07019
26 Naringenin 8.68 C15H12O5 273.0758 273.0753 1.6516 167.0338
27 Tricin methyl ether 12.20 C18H16O7 345.0969 345.0963 1.6836 345.09893
28 Angolensin 4.69 C16H16O4 273.1121 273.1126 1.6989 137.05802
29 Syringetin 3-galactoside 9.30 C23H24O13 509.1290 509.1281 1.7108 347.07443
30 Epigallocatechin 7.34 C15H14O7 307.0812 307.0807 1.7292 307.1301
31 Astragalin 8.88 C21H20O11 449.1078 449.1087 1.9127 287.05789
32 Plantaginin 10.01 C21H20O11 449.1078 449.1087 1.9127 287.0553
33 Gallocatechin 8.70 C15H14O7 307.0812 307.0806 2.0548 163.03957
34 Kakkalide 11.43 C28H32O15 609.1814 609.1827 2.1324 315.08939
35 Icariside II 8.96 C27H30O10 515.1912 515.1923 2.1817 177.05557
36 Velutin 18.27 C17H14O6 315.0863 315.0871 2.4882 315.0876
37 Tectorigenin 13.01 C16H12O6 301.0707 301.0699 2.5443 301.07271
38 Neodiosmin 12.73 C28H32O15 609.1814 609.1830 2.6248 361.09403
39 Demethoxycentaureidin 7-O-rutinoside 10.50 C29H34O16 639.1920 639.1902 2.7629 315.08934
40 Kushenol I 18.06 C26H30O7 455.2064 455.2051 2.9239 455.20299
41 Isorhamnetin 3-O-neohesperoside 5.43 C28H32O16 625.1763 625.1744 3.0647 625.17942
42 Andrographidin B 10.56 C23H24O12 493.1341 493.1356 3.1310 331.08253
43 Rhamnazin 10.71 C17H14O7 331.0812 331.0823 3.2288 331.08269
44 6”-O-Malonylglycitin 14.51 C25H24O13 533.1290 533.1307 3.2431 345.09427
45 Sutchuenoside A 14.64 C29H32O15 621.1814 621.1793 3.3823 315.08714
46 Oenin 15.57 C23H24O12 493.1341 493.1358 3.5366 493.16754
47 Camellianin B 6.24 C27H30O14 579.1708 579.1729 3.5637 144.0809
48 Germanaism E 13.40 C29H32O16 637.1763 637.1786 3.5846 144.0809
49 6-Prenylnaringenin 7.57 C20H20O5 341.1384 341.1397 3.9544 137.05797
50 eupomatenoid 5 5.73 C19H18O3 295.1329 295.1317 3.9677 120.08065
51 Jacein 11.41 C24H26O13 523.1446 523.1467 3.9740 361.09361
52 Iridin 8.20 C24H26O13 523.1446 523.1467 3.9740 523.29549
53 Hexandraside F 11.19 C39H50O20 839.2968 839.3002 4.0200 345.099
54 Gossypetin 3,3′,8-trimethylether 11.30 C18H16O8 361.0918 361.0903 4.1430 331.04442
55 Isorhamnetin 9.93 C16H12O7 317.0656 317.0669 4.1600 317.06484
56 Mirificin 14.60 C26H28O13 549.1603 549.1629 4.7873 345.09951
57 Farrerol 8.86 C17H16O5 301.1071 301.1085 4.8122 167.05907
58 Sophoricoside 10.03 C21H20O10 433.1129 433.1108 4.9087 271.05994
59 Eriodictyol 9.39 C15H12O6 289.0707 289.0721 4.9607 163.04137
60 3′,4′,6-Trihydroxy-3,5,7-trimethoxyflavone 14.99 C18H16O8 361.0918 361.0936 4.9960 361.09153

Figure 4.

Panel A shows a chromatogram highlighting tricin methyl ether, Andrographidin B, rhamnazin, and jacein peaks; panel B identifies Andrographidin B, citrusunshin A, and eupatilin peaks. Panels C through H display MS/MS spectra for Andrographidin B, citrusunshin A, eupatilin, jacein, tricin methyl ether, and rhamnazin, each showing distinct fragment ion patterns on m/z versus intensity graphs.

Representative total ion chromatograms (TICs) and MS/MS spectra of key components in TFC. (A) TIC acquired in positive ion mode; (B) TIC acquired in negative ion mode; (C) Andrographidin B; (D) Citrusunshin A; (E) Eupatilin; (F) Jacein; (G) Tricin methyl ether; (H) Rhamnazin. Labels adjacent to chromatographic peaks in panels (A,B) denote approximate peak heights corresponding to the experimental retention times of these six flavonoids.

3.3. Antimicrobial activity

3.3.1. Inhibitory zone diameter of TFC

As shown in Figure 5, the negative control (DMSO) did not produce an inhibition zone, confirming that the solvent itself had no antibacterial effect and did not interfere with the assay. In contrast, TFC exhibited significant antibacterial activity against the tested strains in a concentration-dependent manner. The diameters of the inhibition zones and the corresponding susceptibility interpretations are summarized in Table 8.

Figure 5.

Three labeled petri dishes display bacterial lawn growth with three wells in each, marked A, B, and C on the left, A, B, and D in the center, and A, B, and E on the right. Each dish shows zones of inhibition surrounding wells B and either C, D, or E, indicated by red circles, suggesting antimicrobial activity. Black background enhances visibility.

Inhibitory zone of TFC against S. aureus. (A) DMSO; (B) Erythromycin (100 μg/mL); (C) TFC (50 mg/mL); (D) TFC (100 mg/mL); (E) TFC (150 mg/mL). n = 3 in each group.

Table 8.

Inhibition zone diameters and susceptibility interpretation of TFC against the S. aureus.

Treatment Inhibitory zone diameter(mm) Interpretation
 DMSO 0 ± 0 No inhibition
Erythromycin(100 μg/mL) 30 ± 0.41 Highly sensitivity
 TFC (50 mg/mL) 13 ± 0.45 Moderately sensitivity
 TFC (100 mg/mL) 16 ± 0.38 Moderately sensitivity
 TFC (150 mg/mL) 20 ± 0.45 Highly sensitivity

An inhibitory zone diameter less than 7 mm indicated no inhibitory effect; n = 3 in each group. A diameter between 7 and 10 mm indicated low sensitivity; a diameter greater than 10 mm but less than 20 mm indicated moderate sensitivity; a diameter greater than 20 mm indicated high sensitivity.

3.3.2. MIC and MBC of TFC

3.3.2.1. MIC

The MIC of TFC was determined via the broth microdilution method. As shown in Figure 6A, a gradual increase in broth turbidity was observed as the TFC concentration was serially reduced from 25 mg/mL to 0.097 mg/mL. At a TFC concentration of 0.781 mg/mL, the culture broth remained transparent, indicating no observable bacterial growth. In contrast, marked turbidity was observed at 0.390 mg/mL, signifying substantial bacterial proliferation. The positive control (erythromycin) yielded clear wells, whereas the negative control (DMSO) exhibited moderate turbidity, verifying that the solvent exerted no inhibitory interference. Accordingly, the MIC of TFC against S. aureus was determined to be 0.781 mg/mL.

Figure 6.

Panel A shows a microdilution plate with wells of varying brown color intensity corresponding to decreasing concentrations of a substance, including controls. Panel B displays six petri dishes labeled with different concentrations; higher concentrations have no bacterial colonies while lower concentrations show visible colony growth. Panel C presents a line graph of optical density at six hundred nanometers versus treatment time for four groups (control, one-half MIC, one MIC, and two MIC), illustrating that increasing concentrations reduce bacterial growth over twenty-four hours.

(A) MIC determination of TFC against S. aureus via broth microdilution method. The wells contained: Negative group: 100 μL S. aureus suspension + 100 μL DMSO; Positive group: 100 μL S. aureus suspension + 100 μL erythromycin solution; Blank: 200 μL LB broth; TFC group: 100 μL of TFC solution at various concentrations + S. aureus suspension. (B) Determination of MBC of TFC against S. aureus. (C) Growth curves of S. aureus treated with different concentrations of TFC. Data are expressed as the mean values ± SD, and n = 3 in each group; ***p < 0.001, vs. the control.

3.3.2.2. MBC

Based on the MIC results, liquid samples were collected from the clear well (indicating no visible growth) and the well corresponding to 1/2 × MIC, and then spread onto agar plates. When the TFC concentration reached 1.562 mg/mL, the colony count on the agar plates was reduced by 99.9%; therefore, the MBC was determined to be 1.562 mg/mL (Figure 6B). This MBC value is twice the MIC (0.781 mg/mL) and is less than four times the MIC, indicating that TFC exhibits bactericidal activity against S. aureus concentrations of 1.562 mg/mL and above.

3.3.3. Bactericidal curve of TFC against S. aureus

As shown in Figure 6C, S. aureus in the control group entered the exponential growth phase after 2 h, with a continuous increase in OD600nm values. The S. aureus treated with 1/2 × MIC showed growth, but at a significantly slower rate. The growth curve of the 1 × MIC group remained nearly flat, indicating a pronounced bacteriostatic effect. In contrast, the 2 × MIC group exhibited no significant variation in OD600nm values, demonstrating complete inhibition of bacterial proliferation at this concentration.

3.4. Antibacterial mechanism

3.4.1. CSH of S. aureus

CSH is a key indicator reflecting the structural integrity and surface composition of bacterial cell membranes. In this study, the n-hexane adhesion assay was used to measure CSH, as illustrated in Figure 7. After treatment with TFC, S. aureus CSH increased significantly (p < 0.001) in a concentration-dependent manner. Compared with the control group (18.5%), CSH rose to approximately 32, 54, and 74% in the 0.5 × MIC, 1 × MIC, and 2 × MIC treatment groups, respectively. These results indicate that TFC markedly alters the CSH of S. aureus.

Figure 7.

Bar graph comparing CSH percentage across four groups: Control, one-half MIC, one MIC, and two MIC. CSH values increase with treatment dose, peaking at two MIC. Significant differences, indicated by three asterisks, are observed between all group comparisons. Bars are colored black for Control, blue for one-half MIC, yellow for one MIC, and red for two MIC. Error bars are shown for each group.

Effect of TFC on the CSH of S. aureus. Data are expressed as the mean values ± SD, and n = 3 in each group; ***p < 0.001, vs. the control.

3.4.2. Extracellular AKP activity of S. aureus

To investigate the effect of TFC on the S. aureus cell wall, AKP activity in the supernatant was measured. As shown in Figure 8, after TFC treatment, the OD₄₀₅ values of the supernatant in all treatment groups were significantly higher than that of the control group (P < 0.001), and the increase exhibited a concentration-dependent pattern. These results indicate that TFC disrupts the structural integrity of the S. aureus cell wall, causing AKP leak into the extracellular environment.

Figure 8.

Line graph showing OD405nm on the y-axis and treatment time in hours on the x-axis, with four groups: control, 1/2MIC, 1MIC, and 2MIC. OD increases rapidly from 0 to 1.5 hours for treatment groups, reaching a plateau, while the control remains low. Statistically significant differences are indicated by three asterisks near the 6-hour marks for all treatment groups. Error bars indicate variability for each data point.

Effect of TFC on extracellular AKP activity of S. aureus. Data are expressed as the mean values ± SD, and n = 3 in each group; ***p < 0.001, vs. the control.

3.4.3. Extracellular nucleic acid and protein concentrations of S. aureus

To evaluate the membrane-damaging effect of TFC, the leakage of intracellular nucleic acids and proteins from S. aureus cells was measured. As shown in Figure 9, in the control group, OD₂₆₀ and OD₂₈₀ values remained at low levels, while in TFC treatment group, the OD₂₆₀ and OD₂₈₀ values increased in a TFC concentration-dependent manner, indicating that TFC treatment induced the leakage of intracellular nucleic acids and proteins of S. aureus. These data demonstrated that TFC disrupts the integrity of S. aureus cell membrane, leading to the efflux of cytoplasmic nucleic acids and proteins.

Figure 9.

Two line graphs labeled A and B display extracellular nucleic acid and protein levels over 1.5, 3, 4.5, and 6 hours of treatment at different MIC concentrations, showing dose-dependent increases compared to the control group.

Extracellular nucleic acid and protein levels in S. aureus after TFC treatment. (A) Extracellular nucleic acid levels; (B) Extracellular protein levels. Data are expressed as the mean values ± SD, and n = 3 in each group; ***p < 0.001, vs. the control.

3.4.4. Cell membrane potential of S. aureus

Cell membrane potential is essential for maintaining bacterial energy metabolism. In this study, the membrane potential-sensitive fluorescent probe Rhodamine 123 was used to evaluate the effect of TFC on the membrane potential of S. aureus. As shown in Figure 10, the control group maintained a high negative membrane potential, resulting in intracellular dye accumulation and strong fluorescence signals. In contrast, after treatment with TFC at different concentrations, the fluorescence intensity of S. aureus decreased significantly in a concentration-dependent manner (P < 0.001). Notably, the fluorescence intensity in the 2 × MIC-treated group was reduced to only about 10% of that in the control. This marked decrease in fluorescence indicates substantial depolarization of the S. aureus cell membrane. These results suggest that TFC may disrupt S. aureus cellular energy metabolism and bacterial growth by damaging membrane structure, interfering with transmembrane ion homeostasis, and impairing energy production.

Figure 10.

Bar chart comparing fluorescence intensity for four groups: Control, one-half minimum inhibitory concentration (blue), one minimum inhibitory concentration (yellow), and two minimum inhibitory concentrations (red). Intensity decreases significantly across groups with increasing concentration, indicated by three asterisks for statistical significance between all pairs.

Relative fluorescence intensity of cell membrane potential in S. aureus. Data are expressed as the mean values ± SD, and n = 3 in each group; ***p < 0.001, vs. the control.

3.4.5. Intracellular nucleic acids of S. aureus

To investigate the effect of TFC on the structural integrity of nucleic acids, the fluorescence intensity of DNA and RNA in S. aureus were measured using DAPI staining. As shown in Figure 11, compared with the control group, TFC treatment resulted in a highly a significant decrease in the fluorescence intensity of both DNA and RNA (p < 0.001). Moreover, as the TFC concentration increased from 1/2 × MIC to 2 × MIC, the fluorescence intensities of DNA and RNA decreased in a concentration-dependent manner. These findings indicated that TFC reduces the intracellular nucleic acid content in S. aureus and/or causes structural damage to nucleic acids, suggesting that its antibacterial activity may involve the disruption of DNA/RNA structures or the promotion of nucleic acid degradation.

Figure 11.

Bar graphs A and B show fluorescence intensity for DAPI-DNA and DAPI-RNA, respectively, at four antibiotic concentrations over two time points, four hours (blue) and twenty-four hours (red), with statistically significant differences indicated by asterisks.

Effect of TFC on the fluorescence intensity of DNA in S. aureus. (A) Fluorescence intensity of DNA; (B) Fluorescence intensity of RNA. Data are expressed as the mean values ± SD, and n = 3 in each group; ***p < 0.001, vs. the control.

3.4.6. Intracellular protein of S. aureus

The expression profile of total bacterial proteins was analyzed by SDS-PAGE, and the results are shown in Figure 12. The lane labelling system used in the gel follows the format “TimeTreatment.” The numeric prefix denotes the sampling time point in hours (4, 16, or 24). The subscript denotes the treatment condition: “0” for the untreated control, “1/2” for 1/2 × MIC, “1” for 1 × MIC, and “2” for 2 × MIC. For instance, lane 40 represents the control group at 4 h, whereas lane 162 represents the 2 × MIC treatment group at 16 h. The blank control group (lanes ending with “0,” e.g., 40, 160, 240) displayed abundant protein bands across a wide molecular weight range at 4 h, 16 h, and 24 h. Moreover, the band intensity increased over time, indicating a rise in protein content and confirming intact protein synthesis and metabolic activity under untreated conditions. In the 1/2 × MIC treatment group (lanes ending with “1/2”), visible attenuation was observed in some protein bands, suggesting that the synthesis of certain specific proteins was affected at an early stage. When the concentration was increased to 1 × MIC (lanes ending with “1”), the signal intensity of most medium- to high-abundance protein bands was significantly reduced. Particularly noteworthy, under the 2 × MIC high concentration treatment (lanes ending with “2”), almost no clearly defined protein bands with sufficient signal intensity were detectable on the gel, with only faint band traces remaining in a very limited molecular weight region (30–42 kDa). These results demonstrate that TFC may inhibit the growth and metabolism of S. aureus by suppressing protein synthesis and/or promoting protein degradation, thereby reducing the total protein content.

Figure 12.

SDS-PAGE gel image displaying protein bands with molecular weight markers in kilodaltons on the left. Each lane is labeled at the bottom with sample identifiers M, 4₀, 4₁/₂, 4₁, 4₂, 16₀, 16₁/₂, 16₁, 16₂, 24₀, 24₁/₂, 24₁, 24₂. Consistent banding patterns are observed with differences in band intensity and distribution across samples.

SDS-PAGE analysis of total protein expression in S. aureus treated with TFC. Lane M: Protein molecular weight marker. The numeric prefix indicates the sampling time point in hours (4, 16, or 24). The subscript indicates the treatment condition: 0 (untreated control), 1/2 (1/2 × MIC), 1 (1 × MIC), and 2 (2 × MIC). Thus, lanes such as 40, 41/2, 41, and 42 represent samples collected at 4 h under control, 1/2 × MIC, 1 × MIC, and 2 × MIC treatments, respectively; similarly for 16 h (160–162) and 24 h (240–242).

3.4.7. ROS levels in S. aureus

To investigate the effect of TFC on oxidative stress in S. aureus, the intracellular ROS levels were measured using the DCFH-DA fluorescent probe. As shown in Figure 13, compared to the control group, S. aureus treated with TFC exhibited a highly significant increase in ROS fluorescence intensity (p < 0.001). Furthermore, the fluorescence intensity increased gradually with prolonged treatment duration and higher TFC concentration. These findings indicated that TFC induces substantial ROS production in S. aureus, thereby inducing severe oxidative stress and ultimately contributing to bacterial death.

Figure 13.

Line graph showing ROS levels (measured by DCF fluorescence, arbitrary units) increasing over 30, 60, 90, and 120 minutes for four groups: control (black), 1/2 MIC (blue), 1 MIC (yellow), and 2 MIC (red). Higher MIC groups show greater ROS accumulation, with significant differences indicated by asterisks at 120 minutes.

ROS levels in S. aureus treated with different concentrations of TFC over time. Data are expressed as the mean values ± SD, and n = 3 in each group; ***p < 0.001, vs. the control.

3.4.8. SEM analysis

SEM analysis revealed significant morphological alterations in S. aureus following TFC treatment. Untreated control cells exhibited typical grape-like clustering, presenting as regular cocci with extremely smooth, turgid surfaces, the cells were uniform in size, clearly demarcated, and free from any signs of adhesion, indentation, or structural damage (Figures 14A,D). In contrast, TFC-exposed bacteria underwent severe degenerative changes and irreversible structural damage. In the 1 × MIC treatment group, the characteristic smoothness of the cell surface was disrupted, giving way to distinct granular roughness. Partial cells exhibited mild shrinkage with reduced volume and formed irregular aggregates with adjacent cells (Figures 14B,E). In the 2 × MIC treatment group, a substantial proportion of the population displayed severe collapse, distortion and deflation, resulting in a complete loss of the original spherical morphology. Localized sites of membrane rupture were evident, accompanied by probable leakage of intracellular contents (Figures 14C,F). These observations demonstrate that TFC compromises the structural integrity of the S. aureus cell walls and membranes, inducing surface coarsening, cellular shrinkage and eventual lysis, thereby leading to cytoplasmic leakage and exerting potent bactericidal effects.

Figure 14.

Panel A shows smooth spherical bacterial cells clustered together under a scanning electron microscope. Panel B presents similar cells with surface irregularities, highlighted by red arrows. Panel C displays more pronounced cell surface deterioration with red arrows marking damaged areas. Panel D illustrates another cluster of smooth spherical bacterial cells. Panel E depicts increasingly rough and disrupted cell surfaces, indicated by red arrows. Panel F shows bacterial cells with extensive surface damage and debris, with red arrows pointing to the most affected regions. Each image uses a magnification of twenty-five thousand times with a scale bar of one micrometer.

Scanning electron micrographs of S. aureus. Untreated controls at 6 h (A) and 12 h (D) post-inoculation, respectively. Cells treated with TFC at 1 × MIC for 6 h (B) and 12 h (E), respectively. Cells treated with TFC at 2 × MIC for 6 h (C) and 12 h (F), respectively. The arrows point to the morphological changes in the cells. Scale bars, 1 μm; height, ×25,000.

3.4.9. Effect of TFC on intracellular ATP concentration

As shown in Figure 15, TFC treatment reduced intracellular ATP content in S. aureus cell in a concentration-dependent manner. Treatment with 1/2 × MIC resulted in a modest ATP reduction, whereas treatment with 1 × MIC and 2 × MIC caused progressively severe ATP depletion. The significant intracellular ATP loss at 2 × MIC indicates severe impairment of S. aureus cell integrity and energy metabolism. Collectively, these alterations represent of a key mechanistic basis for the bactericidal activity of TFC against of S. aureus.

Figure 15.

Bar graph comparing ATP content in pmol per ten thousand cells among four groups: Control (black, highest), one-half MIC (blue), one MIC (yellow), and two MIC (red, lowest). Statistically significant reductions in ATP content are indicated with asterisks above each comparison, showing increased significance with higher MIC concentrations. Error bars indicate standard deviation.

Effects of TFC treatment on intracellular ATP content of S. aureus. Data are expressed as the mean values ± SD, and n = 3 in each group; **p < 0.01, ***p < 0.001, vs. the control.

4. Discussion

S. aureus, one of the most prevalent clinical pathogens, presents an increasingly serious therapeutic challenge, largely due to its high virulence and multidrug resistance (Bashabsheh et al., 2024). As the effectiveness of conventional antibiotics continues to decline, clinical treatment faces the dilemma of “no drugs available” (Wei et al., 2024). TCM compounds hold significant potential to address this challenge owing to their multi-target synergistic antibacterial activity, low propensity to induce resistance, and favorable biosafety profile (Man et al., 2025). Our previous studies have found that the ethanol extract of Clerodendrum cyrtophyllum Turcz. exhibits potent antibacterial activity against S. aureus, while the antibacterial active components of this plant remain to be further investigated (Pei et al., 2025). Thus, we speculated that flavonoids are the key antibacterial components of Clerodendrum cyrtophyllum Turcz. The present study aimed to optimize the extraction conditions for TFC, characterize the TFC profile using LC–MS/MS, and investigate the antibacterial activity and underlying mechanisms of TFC against S. aureus.

In terms of extraction process optimization, this study investigated the effects of ethanol concentration, solid-to-liquid ratio, extraction temperature, and extraction time on the TFC yield through single-factor experiments combined with response surface methodology. The optimized extraction condition for TFC is 70% ethanol. Because of an ethanol concentration below 70% resulted in higher solvent polarity, which hindered the dissolution and diffusion of flavonoids. In contrast, a concentration of ethanol above 70% suppressed the release of hydrophilic components and potentially reduced extraction efficiency due to protein denaturation and subsequent adsorption of target compounds (Yusoff et al., 2022). The optimal solid-to-liquid ratio is 1:25 (g: mL). A solid-to-liquid ratio lower than 1:25 (g: mL) provided insufficient solvent for thorough extraction, while a ratio higher than 1:25 excessively diluted the system, weakening the mass transfer driving force (Huang et al., 2020). The optimal extraction temperature was determined to be 64 °C. Lower temperatures (<64 °C) slowed molecular diffusion, whereas higher temperatures (>64 °C) promoted thermal degradation of heat-sensitive flavonoids and increased solvent evaporation (Zhu et al., 2024). The optimal extraction time is 102 min. Shorter durations (<102 min) were insufficient to reach mass transfer equilibrium, while prolonged extraction (>102 min) could lead to thermal degradation or structural transformation of the extracted flavonoids (Ning et al., 2025).

The cell wall is a robust structure surrounding the bacterial cell membrane, and its integrity is essential for bacterial survival and resistance to external stress (Mueller and Levin, 2020). AKP is a marker enzyme mainly localized between the cell wall and membrane. However, when drugs compromise the cell wall, increased membrane permeability allows AKP to leak into the extracellular environment. Therefore AKP is an important indicator for assessing the degree of cell wall damage (Tang et al., 2021). In the present study, a marked increase in AKP activity in the supernatant was observed after TFC treatment, confirming that TFC specifically disrupts the integrity of the S. aureus cell wall. This structural damage was further visualized by SEM, which revealed severe morphological alterations, including roughness, collapse, and leakage of intracellular contents from the damaged cell surface. The cell membrane, a key semi-permeable barrier that maintains cellular structure, regulates material transport, participates in energy metabolism and signal transduction, is a major target of antimicrobial agents (Zhukov and Popov, 2023). Once membrane structure is impaired and permeability increases, intracellular nucleic acids and proteins leak into the extracellular medium, leading to a pronounced rise in the absorbance of the supernatant at 260 nm and 280 nm. In the present study, TFC treatment induced substantial leakage of intracellular nucleic acids and proteins, indicating that TFC compromises the integrity of S. aureus cell membrane. With respect to membrane function, changes in the cell membrane potential were evaluated using the Rhodamine 123 fluorescent probe. This cationic dye accumulates intracellularly via the electrochemical gradient established by the normal, internally negative membrane potential, yielding a strong fluorescent signal. Membrane depolarization disrupts this gradient, prevents effective dye accumulation, and results in a sharp decrease in fluorescence intensity (Toescu and Verkhratsky, 2000). Our data demonstrate that after TFC treatment, the fluorescence intensity of S. aureus decreased significantly in a concentration-dependent manner, indicating that TFC treatment caused depolarization of the bacterial membrane potential. This depolarization is likely to disturb the maintenance of the proton motive force, which in turn may impair energy-dependent processes such as ATP synthesis, ion homeostasis, and transmembrane nutrient transport, ultimately inhibiting S. aureus growth. Consistent with the above finding, we observed a significant depletion of intracellular ATP levels following TFC treatment, suggesting that the disruption of membrane potential directly cripples S. aureus energy metabolism. Nucleic acids are the genetic material of organisms and the central molecules governing biological traits and life activities. DAPI is a fluorescent dye that binds specifically to nucleic acids. Under specific excitation wavelengths, the DAPI-nucleic acid complex emits characteristic fluorescence, the intensity of which correlates positively with intracellular nucleic acid content and structural integrity (Kapuscinski, 1995). We demonstrated that TFC treatment decreased fluorescence intensity in S. aureus, suggesting that it compromises the structural integrity of nucleic acids and/or promotes their degradation. ROS are a group of highly reactive oxygen-containing molecules or free radicals produced during normal cellular metabolism. However, excessive accumulation of ROS can attack lipids, proteins, and DNA, leading to cellular damage (Rosseti et al., 2015). The findings of this study revealed that the intracellular ROS of S. aureus was significantly elevated after TFC treatment, indicating that TFC not only directly damages the physical structure of the cell wall and membrane but also by inducing excessive endogenous ROS accumulation, ultimately attacking critical bacterial biomolecules and leading to cell death. Proteins are the executors of bacterial life activities, and the integrity of their structure and function directly determines bacterial viability (Malarney and Chang, 2023). In this study, the expression levels of proteins were assessed by comparing the band intensity in SDS-PAGE gels between treated and control groups, with wider and darker bands indicating higher protein content in the corresponding lane (Wang et al., 2024). Our results demonstrated that TFC exerts its antibacterial activity by interfering with protein biosynthesis and/or inducing protein denaturation, thereby providing a proteomic-level insights into the antibacterial mechanism of TFC against S. aureus. From a chemical perspective, comprehensive LC–MS/MS profiling unambiguously annotated 85 distinct flavonoid constituents in the purified TFC fraction, providing a robust phytochemical basis for the observed bioactivity. It is highly plausible that these structurally diverse compounds exert synergistic or additive effects, underscoring the superiority of the complex TFC matrix over isolated single compounds. This chemical complexity could broaden the antibacterial target spectrum, and may play a role in shaping bacterial resistance-related responses.

Unlike most studies that focus on only one or a small number of mechanistic indicators, this study employed a comprehensive panel of assays, including cell-wall integrity assay, cell-membrane permeability evaluation, CSH assay, oxidative stress measurement, energy and protein metabolism studies, and SEM analysis. Collectively, these data confirm that the effect of TFC against S. aureus is attributable to the synergistic action of multiple components, implying a more complex mode of action. This aligns with the “multi-component, multi-target” characteristic of traditional Chinese medicine. Although multiple lines of evidence substantiate the apparent in vitro anti- S. aureus potential of TFC, this study is limited to in vitro experiments. Future studies should combine mammalian cell cytotoxicity profiling with suitable infection models, so as to translate the above compositional insights into a rigorous foundation for exploring plant-derived anti- S. aureus exploration.

5. Conclusion

In this study, the extraction conditions of TFC were optimized to acquire flavonoid-rich extracts. TFC exerts potent inhibitory effects on S. aureus via destroying the structural integrity of cell walls and membranes, depleting intracellular energy reserves, decreasing the contents of intracellular nucleic acids and proteins, and triggering oxidative stress responses in bacterial cells.

Funding Statement

The author(s) declared that financial support was received for this work and/or its publication. This work was supported by the Guizhou Provincial Science and Technology Projects (Grant no: Qian Ke He Ji Chu-ZK[2022]Yi Ban 201).

Edited by: Qingbin Cui, University of Toledo College of Medicine and Life Sciences, United States

Reviewed by: Tian Luan, Shenyang Medical College, China

Josiah Ouma Omolo, Egerton University, Kenya

Abbreviations: S. aureus, Staphylococcus aureus; TFC, Clerodendrum cyrtophyllum Turcz.; LC–MS/MS, Liquid chromatography–tandem mass spectrometry; MIC, minimum inhibitory concentration; MBC, minimum bactericidal concentration; CSH, cell surface hydrophobicity; AKP, extracellular alkaline phosphatase; SEM, scanning electron microscopy; ROS, reactive oxygen species; DMSO, dimethyl sulfoxide; DCFH-DA, 2′,7′-dichlorodihydrofluorescein diacetate; PBS, Phosphate-buffered saline; pNPP, p-nitrophenyl phosphate; DAPI, 4′,6-diamidino-2-phenylindole; RSM, response surface methodology; BBD, Box–Behnken design; ANOVA, Analysis of variance.

Data availability statement

The original contributions presented in the study are included in the article/Supplementary material, further inquiries can be directed to the corresponding author.

Author contributions

YH: Conceptualization, Data curation, Formal analysis, Writing – original draft. WL: Conceptualization, Formal analysis, Investigation, Writing – review & editing. CT: Investigation, Resources, Supervision, Validation, Writing – review & editing. GP: Funding acquisition, Project administration, Supervision, Visualization, Writing – review & editing.

Conflict of interest

The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

The author(s) declared that Generative AI was not used in the creation of this manuscript.

Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary material

The Supplementary material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2026.1961127/full#supplementary-material

Data_Sheet_1.PDF (1.4MB, PDF)

References

  1. Barry A. L., Lasner R. A. (1979). In-vitro methods for determining minimal lethal concentrations of antimicrobial agents. Am. J. Clin. Pathol. 71, 88–92. doi: 10.1093/ajcp/71.1.88, [DOI] [PubMed] [Google Scholar]
  2. Bashabsheh R. H. F., AL-fawares O., Natsheh I., Bdeir R., AL-khrhshieh R. O., Bashabsheh H. H. F. (2024). Staphylococcus aureus epidemiology, pathophysiology, clinical manifestations and application of nano-therapeutics as a promising approach to combat methicillin resistant Staphylococcus aureus. Pathog. Glob. Health 118, 209–231. doi: 10.1080/20477724.2023.2285187 [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Cheung G. Y. C., Bae J. S., Otto M. (2021). Pathogenicity and virulence of Staphylococcus aureus. Virulence 12, 547–569. doi: 10.1080/21505594.2021.1878688, [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Deng X., Liu Y., Zhu X., Zhu H., Huang C., Hong Y., et al. (2025). Momordicae semen: a review of Phytochemistry, pharmacology, toxicology, herbal processing, clinical applications, and Q-markers prediction. Drug Des. Devel. Ther. 19, 10303–10341. doi: 10.2147/dddt.S555032, [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Evans A., Slate A. J., Tobin M., Lynch S., Wilson Nieuwenhuis J., Verran J., et al. (2022). Multifractal analysis to determine the effect of surface topography on the distribution, density, dispersion and clustering of differently organised coccal-shaped bacteria. Antibiotics 11:551. doi: 10.3390/antibiotics11050551, [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Fernandes E. S., Campos C. D. L., Pereira-Filho J. L., Monteiro C., Monteiro-Neto V. (2025). Antimicrobial and anti-infective activity of natural products: unveiling mechanisms, synergies, and translational applications. Antibiotics 14:1163. doi: 10.3390/antibiotics14111163, [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Gildea L., Ayariga J. A., Ajayi O. S., Xu J., Villafane R., Samuel-Foo M. (2022). Cannabis sativa CBD extract shows promising antibacterial activity against Salmonella typhimurium and S. Newington. Molecules 27:2669. doi: 10.3390/molecules27092669, [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Huang X. Y., Fu H. L., Tang H. Q., Yin Z. Q., Zhang W., Shu G., et al. (2020). Optimization of extraction of shikonin using ultrasound-assisted response surface methodology and antibacterial studies. Evid. Based Complement. Alternat. Med.:1208617. doi: 10.1155/2020/1208617 [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Huang X. D., Shao J. M., Liu H., Peng S., Jiang J., Tan C. J. (2025). Modern research progress of textual research of medicinal herb on Clerodendrum cyrtophyllum Turcz. and the clinical application of phenylpropanoid components. Chin. Med. Modern Dist. Educ. China 23, 190–193. doi: 10.3969/j.issn.1672-2779.2025.10.060 [DOI] [Google Scholar]
  10. Kapuscinski J. (1995). DAPI: a DNA-specific fluorescent probe. Biotech. Histochem. 70, 220–233. doi: 10.3109/10520299509108199, [DOI] [PubMed] [Google Scholar]
  11. Karimzadeh I., Kane-Gill S. L., Ma B. (2025). Anti-infective-associated AKI: a narrative review of the epidemiology, mechanisms, risk factors, biomarkers, clinical course, monitoring, prevention, and therapeutic strategies. Antibiotics (Basel) 14:1138. doi: 10.3390/antibiotics14111138, [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Kashyap S., Rathod Y., Biswas S. (2025). Murraya koenigii methanolic extract inhibits bacterial growth and biofilm of Staphylococcus aureus and Enterococcus faecalis. Sci. Rep. 15:34056. doi: 10.1038/s41598-025-14396-z, [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Kouijzer I. J. E., Ghanem-Zoubi N. (2024). The role of [18F]FDG-PET/CT in Staphylococcus aureus bacteremia: a clinical perspective. npj Imaging 2:32. doi: 10.1038/s44303-024-00036-0, [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Liang Y., Zhang H., Dai S., Cong Y., Wu W. (2025). Inhibiting Staphylococcus aureus virulence factors: advances in traditional Chinese medicines and active compounds. Curr. Microbiol. 82:247. doi: 10.1007/s00284-025-04236-8, [DOI] [PubMed] [Google Scholar]
  15. Liu Q., He D., Wang L., Wu Y., Liu X., Yang Y., et al. (2024). Efficacy and safety of antibiotics in the treatment of methicillin-resistant Staphylococcus aureus (MRSA) infections: a systematic review and network meta-analysis. Antibiotics (Basel) 13:866. doi: 10.3390/antibiotics13090866, [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Luo K., Zhao P., He Y., Kang S., Shen C., Wang S., et al. (2022). Antibacterial effect of oregano essential oil against Vibrio vulnificus and its mechanism. Foods 11:403. doi: 10.3390/foods11030403, [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Malarney K. P., Chang P. V. (2023). Chemoproteomic approaches for unraveling prokaryotic biology. Isr. J. Chem. 63:e202200076. doi: 10.1002/ijch.202200076, [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Man T., Yu H., Li L., Nie W., Wang C. (2025). Integrative network pharmacology and experimental validation of multi-target synergy against multidrug-resistant Klebsiella pneumoniae via PI3K/AKT-MAPK pathway disruption. Naunyn Schmiedeberg's Arch. Pharmacol. 399, 5157–5171. doi: 10.1007/s00210-025-04765-w [DOI] [PubMed] [Google Scholar]
  19. Mlynarczyk-Bonikowska B., Rudnicka L. (2025). The pathogenicity mechanisms of Staphylococcus aureus. Int. J. Mol. Sci. 26:11803. doi: 10.3390/ijms262411803, [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Mueller E. A., Levin P. A. (2020). Bacterial cell wall quality control during environmental stress. mBio. 11:e02456-20. doi: 10.1128/mBio.02456-20, [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Nguyen T. H., Le H. D., Kim T. N. T., The H. P., Nguyen T. M., Cornet V., et al. (2020). Anti-inflammatory and antioxidant properties of the ethanol extract of Clerodendrum cyrtophyllum Turcz in copper sulfate-induced inflammation in zebrafish. Antioxidants 9:192. doi: 10.3390/antiox9030192, [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Ning J., Xiang M., Li X., Li X., Tang Q., Jiang Y., et al. (2025). Optimisation of goose oil extraction process by response surface methodology. Sci. Rep. 15:27404. doi: 10.1038/s41598-025-12616-0, [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Pei G., Cao R., Li Q., Hu Y., Zhang Y., Feng Y., et al. (2025). Antibacterial and antibiofilm activity of Clerodendrum cyrtophyllum Turcz. Ethanolic extracts against Staphylococcus aureus from bovine mastitis. J. Microbiol. Biotechnol. 35:e2506007. doi: 10.4014/jmb.2506.06007 [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Qin X., Wu Y., Pang X., Zhao Y., Wang X., Li W., et al. (2026). Potential of traditional Chinese medicine-antibiotic combinations in combating multidrug-resistant organisms: advances, mechanisms, and clinical implications. J. Ethnopharmacol. 361:121261. doi: 10.1016/j.jep.2026.121261, [DOI] [PubMed] [Google Scholar]
  25. Ran J. Q. (2017). Studies on Miao Folk Usage and Chemical Constituents of Clerodendrum cyrtophyllum in Qiandongnan [Master's thesis]. Guiyang: Guizhou Minzu University. [Google Scholar]
  26. Rosseti I. B., Rocha J. B. T., Costa M. S. (2015). Diphenyl diselenide (PhSe)₂ inhibits biofilm formation by Candida albicans, increasing both ROS production and membrane permeability. J. Trace Elem. Med. Biol. 29, 289–295. doi: 10.1016/j.jtemb.2014.08.001, [DOI] [PubMed] [Google Scholar]
  27. Shivaprasad D. P., Taneja N. K., Lakra A., Sachdev D. (2021). In vitro and in situ abrogation of biofilm formation in E. coli by vitamin C through ROS generation, disruption of quorum sensing and exopolysaccharide production. Food Chem. 341:128171. doi: 10.1016/j.foodchem.2020.128171, [DOI] [PubMed] [Google Scholar]
  28. Tang Z., Chen H., Zhang M., Fan Z., Zhong Q., Chen W., et al. (2021). Antibacterial mechanism of 3-carene against the meat spoilage bacterium Pseudomonas lundensis and its application in pork during refrigerated storage. Foods 11:92. doi: 10.3390/foods11010092, [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Tian C., Zhang P., Yang C., Gao X., Wang H., Guo Y., et al. (2018). Extraction process, component analysis, and in vitro antioxidant, antibacterial, and anti-inflammatory activities of total flavonoid extracts from Abutilon theophrasti medic. Leaves. Mediat. Inflamm. 2018, 1–17. doi: 10.1155/2018/3508506, [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Toescu E. C., Verkhratsky A. (2000). Assessment of mitochondrial polarization status in living cells based on analysis of the spatial heterogeneity of rhodamine 123 fluorescence staining. Pflügers Arch. 440, 941–947. doi: 10.1007/s004240000390, [DOI] [PubMed] [Google Scholar]
  31. Tong S. Y. C., Fowler V. G., Jr., Skalla L., Holland T. L. (2025). Management of Staphylococcus aureus bacteremia: a review. JAMA 334, 798–808. doi: 10.1001/jama.2025.4288 [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Tsai W. H., Yang C. C., Li P. C., Chen W. C., Chien C. T. (2013). Therapeutic potential of traditional Chinese medicine on inflammatory diseases. J. Tradit. Complement. Med. 3, 142–151. doi: 10.4103/2225-4110.114898, [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Wan Y., Wang X., Zhang P., Zhang M., Kou M., Shi C., et al. (2021). Control of foodborne Staphylococcus aureus by shikonin, a natural extract. Foods 10:2954. doi: 10.3390/foods10122954, [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Wang L., Qiu M., Li X., Liu M., Li L., Chen Y. (2025). Antimicrobial activity and possible mechanisms of juglone against Escherichia coli, Staphylococcus aureus, and Salmonella pullorum. BMC Microbiol. 25:668. doi: 10.1186/s12866-025-04354-0, [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Wang J., Wang Z., Zhao W., Wang Y. (2024). Microwave-assisted and methanol/acetic acid-free method for rapid staining of proteins in SDS-PAGE gels. Anal. Biochem. 691:115553. doi: 10.1016/j.ab.2024.115553 [DOI] [PubMed] [Google Scholar]
  36. Wang Y., Yin T., Qian M., Ismail B. B., Zou Z., Zhang X., et al. (2025). Integrated phenotypic and transcriptomic analyses unveil the antibacterial mechanism of punicalagin against methicillin-resistant Staphylococcus aureus (MRSA). Foods 14:3589. doi: 10.3390/foods14213589, [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Wei M. Z., Wang Z. J., Zhu Y. Y., Zu W. B., Zhao Y. L., Luo X. D. (2024). Oleanolic acid derivatives against drug-resistant bacteria and fungi by multi-targets to avoid drug resistance. Eur. J. Med. Chem. 280:116940. doi: 10.1016/j.ejmech.2024.116940, [DOI] [PubMed] [Google Scholar]
  38. Wong S., Selby P. R., Reuter S. E. (2024). Determination of a vancomycin nephrotoxicity threshold and assessment of target attainment in hematology patients. Pharmacol. Res. Perspect. 12:e1231. doi: 10.1002/prp2.1231, [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Yusoff I. M., Mat Taher Z., Rahmat Z., Chua L. S. (2022). A review of ultrasound-assisted extraction for plant bioactive compounds: Phenolics, flavonoids, thymols, saponins and proteins. Food Res. Int. 157:111268. doi: 10.1016/j.foodres.2022.111268, [DOI] [PubMed] [Google Scholar]
  40. Zheng X., Liang S., Wen L., Wang H., Bai Y., Wang Y., et al. (2025). Foodborne outbreak of enterotoxigenic Staphylococcus aureus at a school in Hebei, China. Food Res. Int. 214:116645. doi: 10.1016/j.foodres.2025.116645 [DOI] [PubMed] [Google Scholar]
  41. Zhu J., Chen A., Ma H., Cheng Y. Y., Song K. (2024). Optimization of flavonoid extraction from Eucommia ulmoides pollen using response surface methodology and its biological activities. Chem. Biodivers. 21:e202301308. doi: 10.1002/cbdv.202301308 [DOI] [PubMed] [Google Scholar]
  42. Zhukov A., Popov V. (2023). Eukaryotic cell membranes: structure, composition, research methods and computational modelling. Int. J. Mol. Sci. 24:11226. doi: 10.3390/ijms241311226, [DOI] [PMC free article] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Data_Sheet_1.PDF (1.4MB, PDF)

Data Availability Statement

The original contributions presented in the study are included in the article/Supplementary material, further inquiries can be directed to the corresponding author.


Articles from Frontiers in Microbiology are provided here courtesy of Frontiers Media SA

RESOURCES