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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2026 Sep 30;82(Pt 10):1221–1225. doi: 10.1107/S2056989026009527

Crystal structures of products from the BBr3-promoted de­methyl­ation of 3-(meth­oxymeth­yl)-6-phenyl-1,2,4,5-tetra­zine

Jona Voss a,*, Jan-Hendrik Lamm a
Editor: M Weilb
PMCID: PMC13637995  PMID: 42835857

A (meth­oxy­meth­yl)-substituted 1,2,4,5-tetra­zine was treated with BBr3 to obtain both the (hy­droxy­meth­yl)- and (bromo­meth­yl)-substituted 1,2,4,5-tetra­zines; all three compounds were characterized by single-crystal X-ray diffraction measurements, which revealed the formation of inter­molecular π–π stacks for all tetra­zines, as well as hydrogen-bonded dimers of the tetra­zine alcohol.

Keywords: 1,2,4,5-tetra­zine; hydrogen bonds; crystal structure; synthesis

Abstract

The BBr3-promoted de­methyl­ation of 3-(meth­oxy­meth­yl)-6-phenyl-1,2,4,5-tetra­zine, C10H10N4O, resulted in the alcohol (6-phenyl-1,2,4,5-tetrazin-3-yl)methanol, C9H8N4O, and the bromide 3-(bromo­meth­yl)-6-phenyl-1,2,4,5-tetra­zine, C9H7BrN4. All three compounds were analysed by nuclear magnetic resonance (NMR) spectroscopy in solution and by single-crystal X-ray diffraction using non-spherical scattering factors for structure refinement. The substrate as well as the corresponding bromide form π–π inter­actions between anti­parallel stacks of mol­ecules. In contrast, due to the inter­molecular hydrogen bonds present, which lead to the formation of a bent dimer, the alcohol forms only very weak parallel π–π stacks. Corresponding O—H⋯N hydrogen bonds are established between the hy­droxy group and an N atom of a neighbouring tetra­zine mol­ecule, an only rarely explored structural feature of 1,2,4,5-tetra­zines.

1. Chemical context

1,2,4,5-Tetra­zines, first described by Pinner (1893 ▸), are electron-deficient heterocycles of particular relevance in fast and chemoselective cyclo­addition reactions (Zhao et al., 2022 ▸). While structurally simple 1,2,4,5-tetra­zines (herein further abbreviated as tetra­zines) are well-known in the literature, for many modern applications, tetra­zines substituted at the 3- and 6-positions are needed (Yim et al., 2026 ▸). In particular, tetra­zines modified with a hy­droxy­methyl group at the 3-position and derivatives thereof are frequently used as marker mol­ecules in biochemical applications (Baalmann et al., 2019 ▸; Tu et al., 2020 ▸; Wang et al., 2022 ▸). Early reports on the synthesis and derivatization of such tetra­zines were provided by Lang et al. (1975 ▸) through the synthesis of a panel of 3,6-disubstituted tetra­zines. Out of this library, 3-(meth­oxy­meth­yl)-6-phenyl-1,2,4,5-tetra­zine (1) was synthesized (Tu et al., 2019 ▸), and the BBr3-promoted de­methyl­ation re-investigated to obtain the deprotected alcohol (2) and the bromide (3) as a side product (Fig. 1 ▸). In the scope of the present investigations, tetra­zines (1)–(3) were characterised by NMR spectroscopy in solution and by single-crystal X-ray diffraction.1.

Figure 1.

Figure 1

Treatment of tetra­zine (1) with BBr3 afforded both alcohol (2) and bromide (3).

2. Structural commentary

While the structures of tetra­zine (1) and alcohol (2) were clearly confirmed by NMR spectroscopy in solution with 13C{1H} NMR shifts of the methyl­ene groups at 72.3 and 63.0 ppm, respectively, the strong upfield shift of the bromo­methyl group of bromide (3) to 27.8 ppm hints to the introduction of a strongly deshielding substituent. However, unambiguous structural proof was given by the results of single-crystal X-ray diffraction.

Both the substrate (1) and the bromide (3) crystallize in the triclinic space group PInline graphic with one mol­ecule in the asymmetric unit each (Fig. 2 ▸). In contrast, alcohol (2) crystallizes in the monoclinic space group P21/n with a hydrogen-bonded dimer in the asymmetric unit (Fig. 3 ▸). The two crystallographically independent mol­ecules (2A/2B) show close conformational similarity with a root-mean-square deviation of 0.169 Å (Fig. 3 ▸, right). The phenyl units of all tetra­zines (1)–(3) show similar bond lengths for all C—C bonds [1.391 (2)–1.401 (2) Å] and all C—N and N—N bonds of the tetra­zine units [1.308 (1)–1.353 (1) Å], indicative of their aromaticity with an extended co-planar arrangement of the biaryl moieties. The dihedral angles between the phenyl and tetra­zine rings are 3.63 (4)° (1), 2.29 (4)° (2A), 8.47 (5)° (2B), and 2.72 (1)° (3). All bond angles agree with values obtained from structurally similar disubstituted tetra­zines containing a phenyl and substituted methyl substituents (for details see Section 4). The meth­oxy­methyl group of tetra­zine (1) and the bromo­methyl group of bromide (3) accommodate the largest atoms (O and Br), resulting in the smallest torsion angles with 73.17 (8)° for the N1—C2—C1—O1 connection and −74.63 (17)° for the N4—C2—C1—Br1 connection, likely due to repulsion with the N-centered lone pairs of the tetra­zine units. Inter­estingly, the N1—C2—C1—O1 torsion angles of alcohol (2) are different from those of (1) and (3) with −162.92 (7)° for (2A) and 16.06 (9)° for (2B), an observation that may be explained by the inter­molecular hydrogen-bonding inter­actions between hy­droxy groups and tetra­zine-N atoms (see Section 3).

Figure 2.

Figure 2

Mol­ecular structures of tetra­zine (1) and bromide (3) with displacement ellipsoids represented at the 50% probability level and H atoms as spheres of arbitrary radius.

Figure 3.

Figure 3

(Left) Mol­ecular structure of alcohol (2) with displacement ellipsoids represented at the 50% probability level and H atoms as spheres of arbitrary radius; for the sake of clarity only mol­ecule A is shown. (Right) Overlay-plot (generated using the ‘match’ option within OLEX2) of mol­ecules (2A/2B) showing their close conformational similarity.

3. Supra­molecular features

All of the tetra­zines investigated here show π–π inter­actions, the strongest between anti­parallel stacked mol­ecules of tetra­zine (1) and bromide (3) with centroid-to-centroid distances of 3.724 (1) Å [slippage of 1.676 (1) Å] between the phen­yl/tetra­zine rings for (1) and of 3.716 (1) Å [slippage of 1.643 (3) Å] for (3)], respectively (Fig. 4 ▸).

Figure 4.

Figure 4

Supra­molecular π–π inter­actions of mol­ecules of tetra­zine (1) (top) and bromide (3) (bottom) with centroid-to-centroid distances indicated. Displacement ellipsoids are represented at the 50% probability level; symmetry code to obtain the second mol­ecule: (1 − x, 1 − y, 1 − z).

Two hydrogen bonds between hy­droxy groups and tetra­zine N atoms of mol­ecules (2A) and (2B) form a bent dimer of alcohol (2), as shown in Fig. 5 ▸, bottom. The drastic reduction in the N1—C2—C1—O1 torsion angle compared with tetra­zine (1) may be explained by the reduced electron density at the neighbouring N atom, which is attributable to its role as a hydrogen-bond acceptor (Table 1 ▸). Similar hydrogen-bonding inter­actions were described previously for hy­droxy­methyl substituted tetra­zines (Voss et al., 2025 ▸).

Figure 5.

Figure 5

(Top) Supra­molecular π–π inter­actions of mol­ecules of alcohol (2) with the centroid-to-centroid distances indicated; (bottom) formation of a dimer through hydrogen bonds (dashed lines). Displacement ellipsoids are represented at the 50% probability level; symmetry code to obtain the second mol­ecule: (Inline graphic − x, Inline graphic + y, Inline graphic − z).

Table 1. Hydrogen-bond geometry (Å, °) for (2).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
O1A—H1A⋯N1B 0.969 (12) 1.963 (13) 2.9019 (9) 162.7 (10)
O1B—H1B⋯N4A 0.972 (13) 1.871 (13) 2.8287 (9) 168.2 (11)

Inter­estingly, the inter­molecular hydrogen bonds of alcohol (2) cause the formation of weakly inter­acting parallel stacks of mol­ecules without contacts between phen­yl/tetra­zine ring centroids but with comparably elongated phen­yl/phenyl and tetra­zine/tetra­zine centroid-to-centroid distances of 4.557 (1) Å [slippage of 3.245 (1) Å] and 4.622 (1) Å [slippage of 3.311 (1) Å], respectively (Fig. 5 ▸, top). The observation of stronger inter­actions between anti­parallel stacks of tetra­zine (1) and the bromide (3) as compared to parallel stacks of alcohol (2) might be favoured by the increased dipole moment between phenyl and tetra­zine rings in anti­parallel stacks (Huber et al., 2014 ▸; Voss et al., 2025 ▸).

4. Database survey

A search of the Cambridge Structural Database (CSD version 6.01, November 2025; Groom et al., 2016 ▸) using ConQuest (version 2026.1.0) revealed eight reports for 3-aryl-6-alkyl-1,2,4,5-tetra­zines, including CSD refcodes VEMZUM (Voss et al., 2025 ▸), CICPOU (Hu & Xu, 2008 ▸) and REWDUT (Xu & Hu, 2007 ▸). Out of these, the lengths of all aromatic C—C, C—N and N—N bonds are identical within a 3σ margin of error. With dihedral angles between the phenyl and tetra­zine rings of tetra­zines (1)–(3) in the range 2.29 (4) to 8.47 (5)°, similar values between the two rings are also reported for these structurally similar tetra­zines.

5. Synthesis and crystallisation

5.1. Materials and methods

Solvents and starting materials were used without further purification, unless noted otherwise. Di­chloro­methane for reactions was dried by distillation over CaH2. The solvents used for extraction and chromatography were of technical grade and were distilled prior to use. Column chromatography was performed with silica gel 60 M (Acros, 0.04–0.063 mm). Reactions were monitored by thin-layer chromatography (TLC) carried out on silica gel plates (Merck, F254) using UV light (254 nm) for visualization. 3-(Meth­oxy­meth­yl)-6-phenyl-1,2,4,5-tetra­zine (1) was used as starting material and synthesised following a literature protocol (Tu et al., 2019 ▸).

5.2. Analytical devices

Nuclear magnetic resonance spectra were recorded on an Avance 500 spectrometer (Bruker) at 298 K using the residual protonated solvent signal [δ(1H of CHCl3) = 7.26 ppm, δ(13C of CDCl3) = 77.36 ppm] (Fulmer et al., 2010 ▸) as inter­nal standard. Electrospray ionisation (ESI) mass spectra (MS) were acquired with an Esquire 3000 ion trap mass spectrometer (Bruker Daltonik) equipped with a nano-ESI source.

5.3. De­methyl­ation of 3-(meth­oxy­meth­yl)-6-phenyl-1,2,4,5-tetra­zine (1)

This reaction was performed under an argon atmosphere. Tetra­zine (1) (593 mg, 2.93 mmol) was dissolved in dry CH2Cl2 (8 ml) and the resulting pink solution cooled to 258 K. A solution of BBr3 (0.70 ml, 7.38 mmol) in dry CH2Cl2 (15 ml) was added dropwise to this solution over the course of 10 min while maintaining the temperature. The resulting orange solution was stirred at 258 K for 105 min after which a small part of the solution (50 µl) was withdrawn, added to H2O (0.3 ml), and the organic layer analysed by TLC (CH2Cl2), which indicated full consumption of tetra­zine (1). After a total of 155 min, the reaction mixture was poured onto ice (50 g) and CH2Cl2 (100 ml) was added consecutively. After the ice had melted, the layers were separated and the aqueous layer extracted with CH2Cl2 (1×80 ml). The combined pink organic layers were washed with brine (40 ml), dried over MgSO4, filtered and evaporated to obtain a pink solid (481 mg). Purification by column chromatography (diameter = 4.5 cm, length = 23 cm) using CH2Cl2/MeOH (95:5, v/v) to firstly obtain bromide (3) (90.0 mg, 358 µmol, 12%) as a pink solid. Secondly, tetra­zine (1) (42.3 mg, 209 µmol, 7%) was re-isolated as a pink solid. Note that since analysis by TLC indicated complete consumption of tetra­zine (1) a small amount of it must have been formed during the work-up, likely by methyl­ation of alcohol (2) through in situ formed bromo­methane. Thirdly, a mixture of different compounds and alcohol (2) (333 mg, Rf (CH2Cl2/MeOH, 95:5, v/v) = 0.22–0.07) was obtained. Purification of the third fraction by column chromatography (diameter = 4.5 cm, length = 33 cm) using CH2Cl2/MeOH (97.5:2.5, v/v) obtained alcohol (2) (291 mg, 1.55 mmol, 53%) as a pink solid. In Lang’s pioneering work (Lang et al., 1975 ▸), alcohol (2) was described as ‘relatively unstable’, a finding which we are unable to confirm – all the compounds isolated here remained stable in solid form at room temperature for over a year.

Analytical data of tetra­zine (1): 1H NMR (500 MHz, CDCl3) δ [ppm]: 8.63 (m, 2H, o-Car­ylH), 7.67–7.57 (m, 3H, m-/p-Car­ylH), 5.10 (s, 2H, CH2), 3.64 (s, 3H, CH3). 13C{1H}NMR (125 MHz{500 MHz}, CDCl3) δ [ppm]: 166.3 (Car­ylCH2), 165.2 (Car­ylPh), 133.1 (p-Car­yl), 131.7 (Car­yl attached to tetra­zine), 129.5 (m-Car­yl), 128.4 (o-Car­yl), 72.3 (CH2), 59.8 (CH3). MS (ESI, positive): m/z = 225.0 [C10H10N4O+Na]+, 427.1 [2·(C10H10N4O)+Na]+. Rf (CH2Cl2/MeOH, 95:5, v/v) = 0.25). Tetra­zine (1) was crystallized by slow evaporation from a CH2Cl2/MeOH solution at room temperature.

Analytical data of alcohol (2): 1H NMR (500 MHz, CDCl3) δ [ppm]: 8.62 (m, 2H, o-Car­ylH), 7.66 (m, 1H, p-Car­ylH), 7.61 (m, 2H, m-Car­ylH), 5.34 (d, 3J = 6.2 Hz, 2H, CH2), 3.12 (t, 3J = 6.3 Hz, 1H, OH). 13C{1H}NMR (125 MHz{500 MHz}, CDCl3) δ [ppm]: 167.4 (Car­ylCH2), 165.6 (Car­ylPh), 133.2 (p-Car­yl), 131.6 (Car­yl attached to tetra­zine), 129.5 (m-Car­yl), 128.4 (o-Car­yl), 63.0 (CH2). MS (ESI, negative): m/z = 186.9 [C9H8N4O–H]−. Rf (CH2Cl2/MeOH, 97.5:2.5, v/v) = 0.20). Alcohol (2) was crystallized by slow evaporation from a CH2Cl2/cyclo­hexane solution at room temperature.

Analytical data of bromide (3): 1H NMR (500 MHz, CDCl3) δ [ppm]: 8.63 (m, 2H, o-Car­ylH), 7.66 (m, 1H, p-Car­ylH), 7.61 (m, 2H, m-Car­ylH), 5.00 (s, 2H, CH2). 13C{1H}NMR (125 MHz{500 MHz}, CDCl3) δ [ppm]: 167.4 (Car­ylCH2), 164.3 (Car­ylPh), 133.4 (p-Car­yl), 131.4 (Car­yl attached to tetra­zine), 129.6 (m-Car­yl), 128.6 (o-Car­yl), 27.8 (CH2). MS (ESI): the compound was not ionisable. Rf (CH2Cl2/MeOH, 95:5, v/v) = 0.79. Bromide (3) was crystallized by slow evaporation from a CH2Cl2/MeOH solution at room temperature.

6. Refinement

Crystal data, data collection and structure refinement details are summarised in Table 2 ▸. All structures were refined using NoSpherA2 (Kleemiss et al., 2021 ▸), an implementation of non-spherical atom-form-factors in OLEX2 (Dolomanov et al., 2009 ▸). All non-hydrogen atoms were refined anisotropically; hydrogen atoms were refined isotropically. ORCA 5.0 (Neese, 2022 ▸) was used for quantum mechanical calculations. The olex2_refinement_description section of the CIF gives further details.

Table 2. Experimental details.

  (1) (2) (3)
Crystal data
Chemical formula C10H10N4O C9H8N4O C9H7BrN4
M r 202.22 188.19 251.09
Crystal system, space group Triclinic, PInline graphic Monoclinic, P21/n Triclinic, PInline graphic
Temperature (K) 100 100 100
a, b, c (Å) 5.3147 (4), 7.4164 (8), 12.2277 (8) 11.8719 (3), 8.4682 (2), 17.2987 (5) 5.2376 (4), 7.5069 (6), 12.0638 (8)
α, β, γ (°) 86.710 (7), 79.913 (6), 78.920 (8) 90, 92.709 (2), 90 89.632 (6), 80.517 (6), 79.451 (7)
V (Å3) 465.53 (7) 1737.16 (8) 459.80 (6)
Z 2 8 2
Radiation type Mo Kα Mo Kα Mo Kα
μ (mm−1) 0.10 0.10 4.44
Crystal size (mm) 0.52 × 0.24 × 0.18 0.35 × 0.09 × 0.06 0.35 × 0.29 × 0.09
 
Data collection
Diffractometer SuperNova, Single source at offset/far, Eos SuperNova, Single source at offset/far, Eos SuperNova, Single source at offset/far, Eos
Absorption correction Gaussian (CrysAlis PRO; Rigaku OD, 2025 ▸) Gaussian (CrysAlis PRO; Rigaku OD, 2025 ▸) Gaussian (CrysAlis PRO; Rigaku OD, 2025 ▸)
Tmin, Tmax 0.571, 1.000 0.744, 1.000 0.394, 1.000
No. of measured, independent and observed [I ≥ 2u(I)] reflections 8849, 3058, 2256 32315, 4666, 3774 7431, 2531, 2136
R int 0.035 0.045 0.048
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.038, 0.061, 1.09 0.030, 0.066, 1.07 0.033, 0.061, 1.03
No. of reflections 3058 4666 2531
No. of parameters 166 317 148
H-atom treatment H-atom parameters constrained All H-atom parameters refined H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.34, −0.33 0.21, −0.21 0.81, −0.70

Computer programs: CrysAlis PRO (Rigaku OD, 2025 ▸), SHELXT (Sheldrick, 2015 ▸), OLEX2.refine (Bourhis et al., 2015 ▸), OLEX2 (Dolomanov et al., 2009 ▸) and publCIF (Westrip, 2010 ▸).

Supplementary Material

Crystal structure: contains datablock(s) global, 1, 2, 3. DOI: 10.1107/S2056989026009527/wm5811sup1.cif

e-82-01221-sup1.cif (634.6KB, cif)

Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989026009527/wm58111sup2.hkl

e-82-01221-1sup2.hkl (106.8KB, hkl)

Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989026009527/wm58112sup3.hkl

e-82-01221-2sup3.hkl (170.4KB, hkl)

Structure factors: contains datablock(s) 3. DOI: 10.1107/S2056989026009527/wm58113sup4.hkl

e-82-01221-3sup4.hkl (95KB, hkl)
e-82-01221-1sup5.cml (4.2KB, cml)

Supporting information file. DOI: 10.1107/S2056989026009527/wm58111sup5.cml

e-82-01221-2sup6.cml (4.2KB, cml)

Supporting information file. DOI: 10.1107/S2056989026009527/wm58112sup6.cml

CCDC references: 2587346, 2587345, 2587344

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

The authors are deeply grateful to Professor Dr Norbert Sewald for his constant encouragement and for providing infrastructure and research materials. Jona Voss thanks the Studienstiftung des deutschen Volkes for its support. We also thank Dr Jascha Rüter for fruitful discussions and proof-reading of the manuscript. Open access funding enabled and organised by Projekt DEAL. We acknowledge support for the publication costs by the Open Access Publication Fund of Bielefeld University.

supplementary crystallographic information

3-(Methoxymethyl)-6-phenyl-1,2,4,5-tetrazine (1). Crystal data

C10H10N4O Z = 2
Mr = 202.22 F(000) = 212.144
Triclinic, P1 Dx = 1.443 Mg m−3
a = 5.3147 (4) Å Mo Kα radiation, λ = 0.71073 Å
b = 7.4164 (8) Å Cell parameters from 3153 reflections
c = 12.2277 (8) Å θ = 2.8–32.2°
α = 86.710 (7)° µ = 0.10 mm−1
β = 79.913 (6)° T = 100 K
γ = 78.920 (8)° Block, clear light red
V = 465.53 (7) Å3 0.52 × 0.24 × 0.18 mm

3-(Methoxymethyl)-6-phenyl-1,2,4,5-tetrazine (1). Data collection

SuperNova, Single source at offset/far, Eos diffractometer 3058 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source 2256 reflections with I≥ 2u(I)
Mirror monochromator Rint = 0.035
Detector resolution: 8.0951 pixels mm-1 θmax = 32.5°, θmin = 1.7°
ω scans h = −7→7
Absorption correction: gaussian (CrysAlisPro; Rigaku OD, 2025) k = −10→10
Tmin = 0.571, Tmax = 1.000 l = −18→18
8849 measured reflections

3-(Methoxymethyl)-6-phenyl-1,2,4,5-tetrazine (1). Refinement

Refinement on F2 10 constraints
Least-squares matrix: full Primary atom site location: dual
R[F2 > 2σ(F2)] = 0.038 H-atom parameters constrained
wR(F2) = 0.061 w = 1/[σ2(Fo2) + (0.0081P)2 + 0.0348P] where P = (Fo2 + 2Fc2)/3
S = 1.09 (Δ/σ)max = −0.0002
3058 reflections Δρmax = 0.34 e Å−3
166 parameters Δρmin = −0.33 e Å−3
0 restraints

3-(Methoxymethyl)-6-phenyl-1,2,4,5-tetrazine (1). Special details

Refinement. Refinement using NoSpherA2, an implementation of NOn-SPHERical Atom-form-factors in Olex2. The following options were used: SOFTWARE: ORCA 6.1 PARTITIONING: NoSpherA2 INT ACCURACY: Normal METHOD: r2SCAN BASIS SET: def2-TZVPP CHARGE: 0 MULTIPLICITY: 1 SOLVATION: Water DATE: 2026-09-01_14-23-46. Hydrogen atoms were refined isotropically.

3-(Methoxymethyl)-6-phenyl-1,2,4,5-tetrazine (1). Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.92532 (11) 0.72986 (10) 0.04592 (5) 0.01998 (16)
N1 0.90879 (13) 0.72470 (11) 0.29459 (5) 0.01504 (16)
N2 0.80917 (13) 0.68850 (11) 0.39730 (5) 0.01471 (16)
N3 0.40354 (13) 0.86997 (11) 0.37086 (5) 0.01404 (16)
N4 0.50426 (13) 0.90517 (11) 0.26685 (5) 0.01454 (16)
C1 0.88144 (18) 0.88087 (14) 0.11730 (7) 0.01780 (19)
H1A 1.0746 (17) 0.9105 (14) 0.1216 (7) 0.0214 (2)*
H1B 0.7597 (17) 0.9979 (14) 0.0836 (7) 0.0214 (2)*
C2 0.75552 (15) 0.83623 (13) 0.23290 (6) 0.01368 (17)
C3 0.55900 (15) 0.76548 (12) 0.43439 (6) 0.01153 (17)
C4 0.45400 (15) 0.73006 (12) 0.55162 (6) 0.01131 (17)
C5 0.61259 (15) 0.61944 (13) 0.61873 (6) 0.01317 (18)
H5 0.8094 (16) 0.5550 (13) 0.5846 (7) 0.0158 (2)*
C6 0.51547 (16) 0.58844 (13) 0.73007 (7) 0.01524 (18)
H6 0.6404 (16) 0.5014 (14) 0.7800 (7) 0.0183 (2)*
C7 0.26109 (16) 0.66712 (13) 0.77537 (7) 0.01518 (18)
H7 0.1901 (16) 0.6439 (13) 0.8630 (7) 0.0182 (2)*
C8 0.10211 (16) 0.77628 (13) 0.70835 (7) 0.01495 (18)
H8 −0.0982 (17) 0.8388 (14) 0.7428 (7) 0.0179 (2)*
C9 0.19769 (15) 0.80708 (13) 0.59684 (7) 0.01359 (18)
H9 0.0751 (16) 0.8899 (13) 0.5440 (7) 0.0163 (2)*
C10 0.6980 (2) 0.70573 (16) 0.00716 (8) 0.0244 (2)
H10A 0.7482 (19) 0.5807 (16) −0.0412 (8) 0.0366 (3)*
H10B 0.5439 (19) 0.7009 (15) 0.0746 (8) 0.0366 (3)*
H10C 0.6313 (19) 0.8196 (16) −0.0467 (8) 0.0366 (3)*

3-(Methoxymethyl)-6-phenyl-1,2,4,5-tetrazine (1). Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0209 (3) 0.0204 (4) 0.0158 (3) 0.0008 (3) 0.0004 (2) −0.0028 (3)
N1 0.0115 (3) 0.0168 (4) 0.0148 (3) 0.0001 (3) 0.0004 (3) −0.0006 (3)
N2 0.0115 (3) 0.0165 (4) 0.0143 (3) 0.0009 (3) −0.0012 (3) 0.0004 (3)
N3 0.0111 (3) 0.0158 (4) 0.0140 (3) −0.0007 (3) −0.0011 (3) 0.0007 (3)
N4 0.0132 (3) 0.0153 (4) 0.0137 (3) −0.0005 (3) −0.0014 (3) 0.0009 (3)
C1 0.0188 (4) 0.0172 (5) 0.0158 (4) −0.0032 (4) 0.0011 (3) 0.0005 (4)
C2 0.0138 (4) 0.0131 (5) 0.0134 (4) −0.0025 (3) 0.0000 (3) −0.0005 (3)
C3 0.0103 (4) 0.0112 (4) 0.0130 (4) −0.0019 (3) −0.0018 (3) −0.0007 (3)
C4 0.0102 (4) 0.0114 (4) 0.0123 (4) −0.0019 (3) −0.0015 (3) −0.0007 (3)
C5 0.0114 (4) 0.0141 (5) 0.0134 (4) −0.0010 (3) −0.0018 (3) −0.0006 (3)
C6 0.0142 (4) 0.0175 (5) 0.0135 (4) −0.0018 (4) −0.0025 (3) 0.0006 (3)
C7 0.0152 (4) 0.0167 (5) 0.0129 (4) −0.0029 (4) −0.0003 (3) −0.0011 (3)
C8 0.0124 (4) 0.0167 (5) 0.0146 (4) −0.0023 (4) 0.0008 (3) −0.0014 (3)
C9 0.0108 (4) 0.0152 (5) 0.0140 (4) −0.0011 (3) −0.0017 (3) −0.0001 (3)
C10 0.0280 (5) 0.0250 (6) 0.0199 (5) −0.0030 (5) −0.0043 (4) −0.0032 (4)

3-(Methoxymethyl)-6-phenyl-1,2,4,5-tetrazine (1). Geometric parameters (Å, º)

O1—C1 1.4181 (11) C4—C9 1.4003 (11)
O1—C10 1.4176 (11) C5—H5 1.084 (8)
N1—N2 1.3087 (9) C5—C6 1.3915 (11)
N1—C2 1.3422 (10) C6—H6 1.078 (8)
N2—C3 1.3514 (10) C6—C7 1.3952 (11)
N3—N4 1.3226 (9) C7—H7 1.087 (9)
N3—C3 1.3403 (10) C7—C8 1.3944 (11)
N4—C2 1.3359 (10) C8—H8 1.096 (8)
C1—H1A 1.101 (9) C8—C9 1.3912 (11)
C1—H1B 1.086 (9) C9—H9 1.081 (8)
C1—C2 1.5019 (12) C10—H10A 1.092 (11)
C3—C4 1.4724 (11) C10—H10B 1.060 (10)
C4—C5 1.3986 (11) C10—H10C 1.084 (11)
C10—O1—C1 113.11 (7) C6—C5—C4 119.78 (7)
C2—N1—N2 117.77 (7) C6—C5—H5 119.5 (4)
C3—N2—N1 118.01 (7) H6—C6—C5 118.5 (5)
C3—N3—N4 117.89 (6) C7—C6—C5 120.50 (8)
C2—N4—N3 117.60 (7) C7—C6—H6 121.0 (5)
H1A—C1—O1 106.1 (5) H7—C7—C6 119.4 (4)
H1B—C1—O1 109.8 (5) C8—C7—C6 119.77 (8)
H1B—C1—H1A 111.3 (7) C8—C7—H7 120.8 (4)
C2—C1—O1 112.18 (8) H8—C8—C7 120.5 (5)
C2—C1—H1A 108.1 (5) C9—C8—C7 119.99 (8)
C2—C1—H1B 109.4 (5) C9—C8—H8 119.5 (5)
N4—C2—N1 124.67 (8) C8—C9—C4 120.29 (8)
C1—C2—N1 115.93 (7) H9—C9—C4 119.2 (5)
C1—C2—N4 119.39 (7) H9—C9—C8 120.5 (5)
N3—C3—N2 123.89 (7) H10A—C10—O1 107.4 (5)
C4—C3—N2 117.22 (7) H10B—C10—O1 110.6 (5)
C4—C3—N3 118.89 (7) H10B—C10—H10A 112.8 (9)
C5—C4—C3 119.64 (7) H10C—C10—O1 111.3 (6)
C9—C4—C3 120.71 (7) H10C—C10—H10A 108.2 (7)
C9—C4—C5 119.65 (7) H10C—C10—H10B 106.6 (8)
H5—C5—C4 120.7 (4)
O1—C1—C2—N1 73.17 (8) N4—N3—C3—C4 177.76 (7)
O1—C1—C2—N4 −105.80 (8) C2—N1—N2—C3 0.06 (9)
N1—N2—C3—N3 3.10 (9) C2—N4—N3—C3 −1.00 (9)
N1—N2—C3—C4 −177.26 (7) C2—C1—O1—C10 78.41 (9)
N1—C2—N4—N3 4.28 (11) C3—C4—C5—C6 178.83 (8)
N2—N1—C2—N4 −3.79 (9) C3—C4—C9—C8 −178.51 (8)
N2—N1—C2—C1 177.30 (8) C4—C5—C6—C7 −0.10 (10)
N2—C3—N3—N4 −2.60 (10) C4—C9—C8—C7 −0.51 (10)
N2—C3—C4—C5 −0.45 (9) C5—C4—C9—C8 1.00 (10)
N2—C3—C4—C9 179.06 (8) C5—C6—C7—C8 0.59 (11)
N3—N4—C2—C1 −176.84 (8) C6—C5—C4—C9 −0.69 (10)
N3—C3—C4—C5 179.21 (8) C6—C7—C8—C9 −0.29 (11)
N3—C3—C4—C9 −1.28 (10)

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Crystal data

C9H8N4O F(000) = 784.550
Mr = 188.19 Dx = 1.439 Mg m−3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
a = 11.8719 (3) Å Cell parameters from 9457 reflections
b = 8.4682 (2) Å θ = 2.1–30.8°
c = 17.2987 (5) Å µ = 0.10 mm−1
β = 92.709 (2)° T = 100 K
V = 1737.16 (8) Å3 Needle, clear red
Z = 8 0.35 × 0.09 × 0.06 mm

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Data collection

SuperNova, Single source at offset/far, Eos diffractometer 4666 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source 3774 reflections with I≥ 2u(I)
Mirror monochromator Rint = 0.045
Detector resolution: 8.0951 pixels mm-1 θmax = 29.1°, θmin = 2.0°
ω scans h = −16→17
Absorption correction: gaussian (CrysAlisPro; Rigaku OD, 2025) k = −12→11
Tmin = 0.744, Tmax = 1.000 l = −24→24
32315 measured reflections

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Refinement

Refinement on F2 0 constraints
Least-squares matrix: full Primary atom site location: dual
R[F2 > 2σ(F2)] = 0.030 All H-atom parameters refined
wR(F2) = 0.066 w = 1/[σ2(Fo2) + (0.0179P)2 + 0.2291P] where P = (Fo2 + 2Fc2)/3
S = 1.07 (Δ/σ)max = −0.0000
4666 reflections Δρmax = 0.21 e Å−3
317 parameters Δρmin = −0.21 e Å−3
0 restraints

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Special details

Refinement. Refinement using NoSpherA2, an implementation of NOn-SPHERical Atom-form-factors in Olex2. The following options were used: SOFTWARE: ORCA 6.1 PARTITIONING: NoSpherA2 INT ACCURACY: Normal METHOD: r2SCAN BASIS SET: def2-TZVPP CHARGE: 0 MULTIPLICITY: 1 SOLVATION: Water DATE: 2026-09-01_16-19-35. Hydrogen atoms were refined isotropically.

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1A 0.59801 (5) 1.02413 (7) 0.28063 (4) 0.01965 (14)
H1A 0.6607 (10) 0.9789 (14) 0.3110 (7) 0.029 (3)*
O1B 0.86881 (5) 1.01966 (7) 0.25962 (4) 0.02058 (14)
H1B 0.8062 (11) 0.9790 (15) 0.2273 (7) 0.035 (3)*
N1A 0.52904 (6) 0.74303 (8) 0.12699 (4) 0.01679 (15)
N1B 0.76371 (6) 0.82834 (8) 0.36380 (4) 0.01715 (15)
N2A 0.57676 (5) 0.67508 (8) 0.06899 (4) 0.01688 (15)
N2B 0.71656 (6) 0.75248 (8) 0.42088 (4) 0.01752 (15)
N3A 0.75136 (6) 0.79518 (8) 0.10707 (4) 0.01599 (15)
N3B 0.89047 (6) 0.62307 (9) 0.45041 (4) 0.01907 (16)
N4A 0.70263 (6) 0.86196 (8) 0.16591 (4) 0.01601 (15)
N4B 0.93624 (6) 0.69768 (9) 0.39344 (4) 0.01918 (16)
C1A 0.53859 (7) 0.89889 (11) 0.24476 (5) 0.01957 (18)
H1Aa 0.5285 (9) 0.8000 (13) 0.2849 (6) 0.039 (3)*
H1Ab 0.4555 (9) 0.9394 (13) 0.2265 (6) 0.043 (3)*
C1B 0.92960 (7) 0.88877 (11) 0.28883 (5) 0.01941 (18)
H1Ba 0.9452 (9) 0.8015 (13) 0.2444 (6) 0.042 (3)*
H1Bb 1.0106 (9) 0.9282 (12) 0.3117 (6) 0.034 (3)*
C2A 0.59403 (6) 0.83232 (9) 0.17545 (5) 0.01452 (16)
C2B 0.87263 (7) 0.80304 (10) 0.35268 (5) 0.01583 (17)
C3A 0.68812 (6) 0.70005 (9) 0.06061 (5) 0.01377 (16)
C3B 0.78189 (7) 0.65559 (10) 0.46492 (5) 0.01512 (17)
C4A 0.74238 (6) 0.61986 (9) −0.00351 (5) 0.01426 (16)
C4B 0.73344 (7) 0.57847 (10) 0.53216 (5) 0.01579 (17)
C5A 0.67944 (7) 0.52052 (10) −0.05393 (5) 0.01702 (17)
H5A 0.5903 (8) 0.5023 (12) −0.0456 (6) 0.031 (3)*
C5B 0.61878 (7) 0.59683 (11) 0.54546 (5) 0.02024 (18)
H5B 0.5665 (9) 0.6653 (14) 0.5054 (6) 0.040 (3)*
C6A 0.73229 (7) 0.44423 (10) −0.11365 (5) 0.01900 (18)
H6A 0.6838 (9) 0.3643 (13) −0.1510 (6) 0.036 (3)*
C6B 0.57384 (8) 0.52971 (11) 0.61061 (5) 0.0245 (2)
H6B 0.4841 (9) 0.5440 (13) 0.6203 (6) 0.039 (3)*
C7A 0.84716 (7) 0.46702 (11) −0.12364 (5) 0.01942 (18)
H7A 0.8874 (9) 0.4069 (13) −0.1685 (7) 0.043 (3)*
C7B 0.64302 (8) 0.44385 (12) 0.66256 (5) 0.0257 (2)
H7B 0.6084 (9) 0.3926 (13) 0.7137 (7) 0.041 (3)*
C8A 0.90950 (7) 0.56615 (11) −0.07371 (5) 0.01958 (18)
H8A 0.9988 (9) 0.5834 (13) −0.0805 (6) 0.038 (3)*
C8B 0.75664 (8) 0.42286 (11) 0.64873 (5) 0.0247 (2)
H8B 0.8100 (9) 0.3533 (14) 0.6870 (7) 0.048 (3)*
C9A 0.85757 (7) 0.64189 (10) −0.01341 (5) 0.01796 (18)
H9A 0.9041 (8) 0.7182 (12) 0.0273 (6) 0.028 (3)*
C9B 0.80233 (7) 0.48971 (10) 0.58373 (5) 0.01967 (18)
H9B 0.8907 (9) 0.4737 (13) 0.5731 (6) 0.039 (3)*

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1A 0.0218 (3) 0.0163 (3) 0.0205 (3) 0.0027 (2) −0.0014 (3) −0.0006 (2)
O1B 0.0229 (3) 0.0159 (3) 0.0225 (3) −0.0039 (2) −0.0036 (3) −0.0006 (2)
N1A 0.0115 (3) 0.0197 (4) 0.0190 (4) −0.0028 (3) −0.0002 (3) −0.0001 (3)
N1B 0.0151 (3) 0.0180 (4) 0.0182 (4) 0.0037 (3) −0.0015 (3) 0.0009 (3)
N2A 0.0120 (3) 0.0199 (4) 0.0187 (4) −0.0036 (3) −0.0004 (3) −0.0019 (3)
N2B 0.0140 (3) 0.0197 (4) 0.0188 (4) 0.0044 (3) −0.0006 (3) 0.0011 (3)
N3A 0.0125 (3) 0.0189 (4) 0.0164 (4) −0.0045 (3) −0.0005 (3) −0.0008 (3)
N3B 0.0149 (3) 0.0211 (4) 0.0210 (4) 0.0054 (3) −0.0016 (3) 0.0015 (3)
N4A 0.0145 (3) 0.0174 (4) 0.0160 (3) −0.0038 (3) −0.0006 (3) −0.0005 (3)
N4B 0.0145 (3) 0.0215 (4) 0.0215 (4) 0.0035 (3) −0.0000 (3) 0.0010 (3)
C1A 0.0161 (4) 0.0211 (5) 0.0217 (5) 0.0003 (3) 0.0019 (3) −0.0022 (4)
C1B 0.0196 (4) 0.0174 (4) 0.0212 (5) −0.0018 (3) 0.0007 (3) −0.0013 (3)
C2A 0.0132 (4) 0.0141 (4) 0.0162 (4) −0.0005 (3) −0.0003 (3) 0.0010 (3)
C2B 0.0146 (4) 0.0154 (4) 0.0173 (4) 0.0007 (3) −0.0012 (3) −0.0018 (3)
C3A 0.0117 (4) 0.0151 (4) 0.0144 (4) −0.0025 (3) −0.0008 (3) 0.0015 (3)
C3B 0.0141 (4) 0.0151 (4) 0.0160 (4) 0.0020 (3) −0.0014 (3) −0.0018 (3)
C4A 0.0131 (4) 0.0156 (4) 0.0139 (4) −0.0026 (3) −0.0009 (3) 0.0015 (3)
C4B 0.0166 (4) 0.0149 (4) 0.0157 (4) 0.0011 (3) −0.0013 (3) −0.0017 (3)
C5A 0.0152 (4) 0.0197 (4) 0.0160 (4) −0.0035 (3) −0.0009 (3) −0.0005 (3)
C5B 0.0176 (4) 0.0230 (5) 0.0202 (5) 0.0023 (3) 0.0013 (3) −0.0010 (4)
C6A 0.0198 (4) 0.0207 (4) 0.0164 (4) −0.0035 (3) −0.0003 (3) −0.0017 (3)
C6B 0.0234 (5) 0.0287 (5) 0.0217 (5) −0.0027 (4) 0.0048 (4) −0.0015 (4)
C7A 0.0201 (4) 0.0219 (4) 0.0165 (4) 0.0002 (3) 0.0029 (3) −0.0004 (3)
C7B 0.0320 (5) 0.0267 (5) 0.0183 (5) −0.0086 (4) 0.0015 (4) 0.0006 (4)
C8A 0.0147 (4) 0.0245 (5) 0.0196 (4) −0.0009 (3) 0.0022 (3) −0.0002 (3)
C8B 0.0289 (5) 0.0243 (5) 0.0203 (5) −0.0049 (4) −0.0057 (4) 0.0039 (4)
C9A 0.0134 (4) 0.0221 (4) 0.0183 (4) −0.0030 (3) 0.0002 (3) −0.0010 (3)
C9B 0.0201 (4) 0.0194 (4) 0.0190 (4) −0.0005 (3) −0.0043 (3) 0.0012 (3)

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Geometric parameters (Å, º)

O1A—H1A 0.969 (12) C3B—C4B 1.4742 (12)
O1A—C1A 1.4022 (10) C4A—C5A 1.4018 (11)
O1B—H1B 0.972 (13) C4A—C9A 1.3988 (11)
O1B—C1B 1.4036 (10) C4B—C5B 1.3999 (11)
N1A—N2A 1.3086 (10) C4B—C9B 1.4003 (11)
N1A—C2A 1.3448 (10) C5A—H5A 1.085 (10)
N1B—N2B 1.3242 (10) C5A—C6A 1.3926 (12)
N1B—C2B 1.3336 (10) C5B—H5B 1.078 (11)
N2A—C3A 1.3534 (10) C5B—C6B 1.3909 (13)
N2B—C3B 1.3413 (10) C6A—H6A 1.082 (10)
N3A—N4A 1.3214 (10) C6A—C7A 1.3961 (12)
N3A—C3A 1.3421 (10) C6B—H6B 1.093 (11)
N3B—N4B 1.3101 (10) C6B—C7B 1.3932 (13)
N3B—C3B 1.3533 (10) C7A—H7A 1.061 (11)
N4A—C2A 1.3314 (10) C7A—C8A 1.3922 (12)
N4B—C2B 1.3466 (10) C7B—H7B 1.084 (11)
C1A—H1Aa 1.098 (11) C7B—C8B 1.3925 (13)
C1A—H1Ab 1.078 (11) C8A—H8A 1.082 (10)
C1A—C2A 1.5042 (12) C8A—C9A 1.3929 (12)
C1B—H1Ba 1.089 (11) C8B—H8B 1.071 (11)
C1B—H1Bb 1.075 (10) C8B—C9B 1.3918 (13)
C1B—C2B 1.5083 (12) C9A—H9A 1.087 (10)
C3A—C4A 1.4745 (11) C9B—H9B 1.082 (11)
C1A—O1A—H1A 107.3 (7) C9A—C4A—C3A 119.68 (7)
C1B—O1B—H1B 107.0 (7) C9A—C4A—C5A 119.95 (8)
C2A—N1A—N2A 117.96 (7) C5B—C4B—C3B 119.95 (7)
C2B—N1B—N2B 118.46 (7) C9B—C4B—C3B 120.17 (7)
C3A—N2A—N1A 118.29 (7) C9B—C4B—C5B 119.87 (8)
C3B—N2B—N1B 117.83 (7) H5A—C5A—C4A 119.8 (5)
C3A—N3A—N4A 117.73 (7) C6A—C5A—C4A 119.63 (8)
C3B—N3B—N4B 118.29 (7) C6A—C5A—H5A 120.6 (5)
C2A—N4A—N3A 118.46 (7) H5B—C5B—C4B 119.3 (6)
C2B—N4B—N3B 118.11 (7) C6B—C5B—C4B 120.07 (8)
H1Aa—C1A—O1A 111.4 (6) C6B—C5B—H5B 120.6 (6)
H1Ab—C1A—O1A 108.9 (6) H6A—C6A—C5A 119.1 (6)
H1Ab—C1A—H1Aa 107.6 (8) C7A—C6A—C5A 120.31 (8)
C2A—C1A—O1A 113.97 (7) C7A—C6A—H6A 120.5 (6)
C2A—C1A—H1Aa 106.4 (6) H6B—C6B—C5B 119.6 (6)
C2A—C1A—H1Ab 108.3 (6) C7B—C6B—C5B 119.93 (9)
H1Ba—C1B—O1B 112.6 (6) C7B—C6B—H6B 120.5 (6)
H1Bb—C1B—O1B 108.8 (6) H7A—C7A—C6A 120.0 (6)
H1Bb—C1B—H1Ba 106.9 (8) C8A—C7A—C6A 120.02 (8)
C2B—C1B—O1B 113.76 (7) C8A—C7A—H7A 119.9 (6)
C2B—C1B—H1Ba 106.7 (6) H7B—C7B—C6B 120.1 (6)
C2B—C1B—H1Bb 107.7 (6) C8B—C7B—C6B 120.14 (9)
N4A—C2A—N1A 123.99 (8) C8B—C7B—H7B 119.8 (6)
C1A—C2A—N1A 116.60 (7) H8A—C8A—C7A 120.6 (6)
C1A—C2A—N4A 119.40 (7) C9A—C8A—C7A 120.08 (8)
N4B—C2B—N1B 123.68 (8) C9A—C8A—H8A 119.3 (6)
C1B—C2B—N1B 119.98 (7) H8B—C8B—C7B 120.9 (6)
C1B—C2B—N4B 116.27 (7) C9B—C8B—C7B 120.31 (9)
N3A—C3A—N2A 123.45 (8) C9B—C8B—H8B 118.8 (6)
C4A—C3A—N2A 118.18 (7) C8A—C9A—C4A 120.01 (8)
C4A—C3A—N3A 118.36 (7) H9A—C9A—C4A 118.0 (5)
N3B—C3B—N2B 123.33 (8) H9A—C9A—C8A 122.0 (5)
C4B—C3B—N2B 118.84 (7) C8B—C9B—C4B 119.66 (8)
C4B—C3B—N3B 117.83 (7) H9B—C9B—C4B 120.0 (6)
C5A—C4A—C3A 120.37 (7) H9B—C9B—C8B 120.3 (6)
O1A—C1A—C2A—N1A −162.92 (7) N3B—C3B—C4B—C5B −174.15 (7)
O1A—C1A—C2A—N4A 18.03 (9) N3B—C3B—C4B—C9B 7.26 (9)
O1B—C1B—C2B—N1B 16.06 (9) N4A—N3A—C3A—C4A −177.69 (7)
O1B—C1B—C2B—N4B −166.93 (7) N4B—N3B—C3B—C4B −176.25 (7)
N1A—N2A—C3A—N3A −2.39 (9) C2A—N1A—N2A—C3A −0.78 (9)
N1A—N2A—C3A—C4A 178.34 (7) C2A—N4A—N3A—C3A −0.49 (8)
N1A—C2A—N4A—N3A −2.73 (9) C2B—N1B—N2B—C3B 0.77 (9)
N1B—N2B—C3B—N3B −5.01 (9) C2B—N4B—N3B—C3B 0.23 (9)
N1B—N2B—C3B—C4B 175.76 (7) C3A—C4A—C5A—C6A −179.25 (8)
N1B—C2B—N4B—N3B −4.47 (10) C3A—C4A—C9A—C8A 179.81 (8)
N2A—N1A—C2A—N4A 3.38 (9) C3B—C4B—C5B—C6B −177.30 (8)
N2A—N1A—C2A—C1A −175.62 (7) C3B—C4B—C9B—C8B 177.35 (8)
N2A—C3A—N3A—N4A 3.04 (9) C4A—C5A—C6A—C7A −0.35 (10)
N2A—C3A—C4A—C5A −0.12 (9) C4A—C9A—C8A—C7A −0.75 (10)
N2A—C3A—C4A—C9A −179.41 (7) C4B—C5B—C6B—C7B −0.14 (10)
N2B—N1B—C2B—N4B 3.95 (9) C4B—C9B—C8B—C7B 0.03 (10)
N2B—N1B—C2B—C1B −179.28 (7) C5A—C4A—C9A—C8A 0.51 (9)
N2B—C3B—N3B—N4B 4.50 (9) C5A—C6A—C7A—C8A 0.12 (10)
N2B—C3B—C4B—C5B 5.13 (9) C5B—C4B—C9B—C8B −1.23 (9)
N2B—C3B—C4B—C9B −173.46 (8) C5B—C6B—C7B—C8B −1.07 (11)
N3A—N4A—C2A—C1A 176.25 (7) C6A—C5A—C4A—C9A 0.04 (10)
N3A—C3A—C4A—C5A −179.42 (7) C6A—C7A—C8A—C9A 0.43 (10)
N3A—C3A—C4A—C9A 1.29 (9) C6B—C5B—C4B—C9B 1.29 (10)
N3B—N4B—C2B—C1B 178.65 (7) C6B—C7B—C8B—C9B 1.13 (11)

(6-Phenyl-1,2,4,5-tetrazin-3-yl)methanol (2). Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1A—H1A···N1B 0.969 (12) 1.963 (13) 2.9019 (9) 162.7 (10)
O1B—H1B···N4A 0.972 (13) 1.871 (13) 2.8287 (9) 168.2 (11)

3-(Bromomethyl)-6-phenyl-1,2,4,5-tetrazine (3). Crystal data

C9H7BrN4 Z = 2
Mr = 251.09 F(000) = 247.736
Triclinic, P1 Dx = 1.814 Mg m−3
a = 5.2376 (4) Å Mo Kα radiation, λ = 0.71073 Å
b = 7.5069 (6) Å Cell parameters from 3207 reflections
c = 12.0638 (8) Å θ = 3.2–30.6°
α = 89.632 (6)° µ = 4.44 mm−1
β = 80.517 (6)° T = 100 K
γ = 79.451 (7)° Block, clear red
V = 459.80 (6) Å3 0.35 × 0.29 × 0.09 mm

3-(Bromomethyl)-6-phenyl-1,2,4,5-tetrazine (3). Data collection

SuperNova, Single source at offset/far, Eos diffractometer 2531 independent reflections
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source 2136 reflections with I≥ 2u(I)
Mirror monochromator Rint = 0.048
Detector resolution: 8.0951 pixels mm-1 θmax = 29.6°, θmin = 1.7°
ω scans h = −7→7
Absorption correction: gaussian (CrysAlisPro; Rigaku OD, 2025) k = −10→10
Tmin = 0.394, Tmax = 1.000 l = −17→16
7431 measured reflections

3-(Bromomethyl)-6-phenyl-1,2,4,5-tetrazine (3). Refinement

Refinement on F2 7 constraints
Least-squares matrix: full Primary atom site location: dual
R[F2 > 2σ(F2)] = 0.033 H-atom parameters constrained
wR(F2) = 0.061 w = 1/[σ2(Fo2) + (0.0159P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max = −0.0002
2531 reflections Δρmax = 0.81 e Å−3
148 parameters Δρmin = −0.70 e Å−3
0 restraints

3-(Bromomethyl)-6-phenyl-1,2,4,5-tetrazine (3). Special details

Refinement. Refinement using NoSpherA2, an implementation of NOn-SPHERical Atom-form-factors in Olex2. The following options were used: SOFTWARE: ORCA 6.1 PARTITIONING: NoSpherA2 INT ACCURACY: Normal METHOD: r2SCAN BASIS SET: def2-TZVPP CHARGE: 0 MULTIPLICITY: 1 SOLVATION: Water DATE: 2026-09-01_14-39-25. Hydrogen atoms were refined isotropically.

3-(Bromomethyl)-6-phenyl-1,2,4,5-tetrazine (3). Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.65100 (5) 0.72768 (3) 0.010906 (19) 0.02391 (8)
N1 0.8794 (3) 0.7258 (3) 0.28825 (15) 0.0176 (4)
N2 0.7978 (3) 0.6944 (3) 0.39466 (15) 0.0178 (4)
N3 0.3775 (3) 0.8719 (2) 0.38276 (15) 0.0172 (4)
N4 0.4589 (3) 0.9025 (3) 0.27664 (16) 0.0191 (4)
C1 0.8027 (5) 0.8656 (3) 0.11273 (19) 0.0212 (5)
H1a 1.023 (5) 0.823 (3) 0.0968 (19) 0.0254 (6)*
H1b 0.726 (5) 1.015 (3) 0.097 (2) 0.0254 (6)*
C2 0.7078 (4) 0.8275 (3) 0.23224 (18) 0.0159 (4)
C3 0.5477 (4) 0.7671 (3) 0.43979 (18) 0.0144 (4)
C4 0.4543 (4) 0.7315 (3) 0.55885 (17) 0.0134 (4)
C5 0.6212 (4) 0.6175 (3) 0.62007 (18) 0.0148 (4)
H5 0.817 (4) 0.550 (3) 0.5826 (18) 0.0178 (5)*
C6 0.5325 (4) 0.5841 (3) 0.73262 (19) 0.0174 (5)
H6 0.664 (4) 0.495 (3) 0.7779 (19) 0.0209 (5)*
C7 0.2781 (4) 0.6636 (3) 0.78360 (19) 0.0171 (5)
H7 0.211 (4) 0.629 (3) 0.8726 (19) 0.0205 (5)*
C8 0.1121 (4) 0.7774 (3) 0.72290 (19) 0.0178 (5)
H8 −0.086 (4) 0.841 (3) 0.7634 (19) 0.0214 (5)*
C9 0.1997 (4) 0.8101 (3) 0.61046 (18) 0.0152 (4)
H9 0.075 (4) 0.900 (3) 0.5609 (19) 0.0182 (5)*

3-(Bromomethyl)-6-phenyl-1,2,4,5-tetrazine (3). Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.02876 (14) 0.02440 (14) 0.01709 (13) −0.00081 (10) −0.00401 (9) −0.00149 (9)
N1 0.0139 (9) 0.0189 (10) 0.0180 (10) 0.0008 (7) −0.0008 (7) −0.0004 (8)
N2 0.0124 (9) 0.0200 (10) 0.0189 (10) 0.0018 (8) −0.0022 (7) 0.0004 (8)
N3 0.0134 (9) 0.0171 (10) 0.0194 (10) 0.0015 (7) −0.0024 (7) 0.0004 (8)
N4 0.0159 (10) 0.0192 (10) 0.0205 (10) 0.0012 (8) −0.0030 (7) 0.0022 (8)
C1 0.0201 (12) 0.0232 (13) 0.0195 (12) −0.0036 (10) −0.0020 (9) 0.0040 (10)
C2 0.0149 (11) 0.0156 (11) 0.0171 (11) −0.0015 (8) −0.0036 (8) 0.0004 (9)
C3 0.0116 (10) 0.0135 (11) 0.0180 (11) −0.0010 (8) −0.0032 (8) −0.0010 (9)
C4 0.0121 (10) 0.0098 (10) 0.0183 (11) −0.0003 (8) −0.0041 (8) −0.0015 (8)
C5 0.0114 (10) 0.0134 (11) 0.0181 (11) 0.0019 (8) −0.0023 (8) −0.0008 (9)
C6 0.0145 (11) 0.0153 (11) 0.0214 (12) 0.0012 (9) −0.0045 (9) −0.0006 (9)
C7 0.0166 (11) 0.0153 (11) 0.0186 (12) −0.0013 (9) −0.0023 (9) 0.0012 (9)
C8 0.0129 (11) 0.0181 (12) 0.0206 (12) 0.0003 (9) −0.0008 (9) −0.0009 (9)
C9 0.0115 (10) 0.0152 (11) 0.0179 (11) −0.0000 (8) −0.0021 (8) 0.0004 (9)

3-(Bromomethyl)-6-phenyl-1,2,4,5-tetrazine (3). Geometric parameters (Å, º)

Br1—C1 1.962 (2) C4—C5 1.404 (3)
N1—N2 1.318 (2) C4—C9 1.399 (3)
N1—C2 1.338 (3) C5—H5 1.09 (2)
N2—C3 1.348 (3) C5—C6 1.397 (3)
N3—N4 1.314 (2) C6—H6 1.08 (2)
N3—C3 1.351 (3) C6—C7 1.397 (3)
N4—C2 1.345 (3) C7—H7 1.12 (2)
C1—H1a 1.13 (2) C7—C8 1.397 (3)
C1—H1b 1.15 (3) C8—H8 1.09 (2)
C1—C2 1.489 (3) C8—C9 1.394 (3)
C3—C4 1.478 (3) C9—H9 1.10 (2)
C2—N1—N2 117.68 (17) C9—C4—C3 120.19 (18)
C3—N2—N1 117.92 (17) C9—C4—C5 119.94 (19)
C3—N3—N4 118.14 (18) H5—C5—C4 122.4 (11)
C2—N4—N3 117.46 (18) C6—C5—C4 119.76 (19)
H1a—C1—Br1 109.3 (12) C6—C5—H5 117.8 (11)
H1b—C1—Br1 105.8 (12) H6—C6—C5 118.5 (12)
H1b—C1—H1a 115.0 (17) C7—C6—C5 119.9 (2)
C2—C1—Br1 110.83 (15) C7—C6—H6 121.6 (12)
C2—C1—H1a 107.5 (12) H7—C7—C6 118.0 (12)
C2—C1—H1b 108.4 (12) C8—C7—C6 120.4 (2)
N4—C2—N1 125.0 (2) C8—C7—H7 121.5 (12)
C1—C2—N1 117.44 (19) H8—C8—C7 120.2 (12)
C1—C2—N4 117.57 (19) C9—C8—C7 119.8 (2)
N3—C3—N2 123.82 (19) C9—C8—H8 120.0 (12)
C4—C3—N2 118.23 (18) C8—C9—C4 120.18 (19)
C4—C3—N3 117.95 (18) H9—C9—C4 118.2 (12)
C5—C4—C3 119.87 (18) H9—C9—C8 121.6 (12)
Br1—C1—C2—N1 107.43 (16) N3—C3—C4—C9 −2.1 (2)
Br1—C1—C2—N4 −74.63 (17) N4—N3—C3—C4 −179.36 (18)
N1—N2—C3—N3 −0.9 (2) C2—N1—N2—C3 −0.2 (2)
N1—N2—C3—C4 179.59 (18) C2—N4—N3—C3 −0.3 (2)
N1—C2—N4—N3 −0.8 (2) C3—C4—C5—C6 179.94 (19)
N2—N1—C2—N4 1.0 (2) C3—C4—C9—C8 −179.63 (19)
N2—N1—C2—C1 178.79 (19) C4—C5—C6—C7 0.3 (2)
N2—C3—N3—N4 1.1 (2) C4—C9—C8—C7 −0.9 (2)
N2—C3—C4—C5 −2.9 (2) C5—C4—C9—C8 0.7 (2)
N2—C3—C4—C9 177.44 (19) C5—C6—C7—C8 −0.5 (2)
N3—N4—C2—C1 −178.56 (19) C6—C5—C4—C9 −0.4 (2)
N3—C3—C4—C5 177.48 (18) C6—C7—C8—C9 0.8 (2)

Funding Statement

Funding for this research was provided by: Studienstiftung des deutschen Volkes (scholarship to Jona Voss).

References

  1. Baalmann, M., Ziegler, M. J., Werther, P., Wilhelm, J. & Wombacher, R. (2019). Bioconjugate Chem.30, 1405–1414. [DOI] [PubMed]
  2. Bourhis, L. J., Dolomanov, O. V., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2015). Acta Cryst. A71, 59–75. [DOI] [PMC free article] [PubMed]
  3. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst.42, 339–341.
  4. Fulmer, G. R., Miller, A. J. M., Sherden, N. H., Gottlieb, H. E., Nudelman, A., Stoltz, B. M., Bercaw, J. E. & Goldberg, K. I. (2010). Organometallics29, 2176–2179.
  5. Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. [DOI] [PMC free article] [PubMed]
  6. Hu, W.-X. & Xu, F. (2008). J. Heterocycl. Chem.45, 1745–1750.
  7. Huber, R. G., Margreiter, M. A., Fuchs, J. E., von Grafenstein, S., Tautermann, C. S., Liedl, K. R. & Fox, T. (2014). J. Chem. Inf. Model.54, 1371–1379. [DOI] [PMC free article] [PubMed]
  8. Kleemiss, F., Dolomanov, O. V., Bodensteiner, M., Peyerimhoff, N., Midgley, L., Bourhis, L. J., Genoni, A., Malaspina, L. A., Jayatilaka, D., Spencer, J. L., White, F., Grundkötter-Stock, B., Steinhauer, S., Lentz, D., Puschmann, H. & Grabowsky, S. (2021). Chem. Sci.12, 1675–1692. [DOI] [PMC free article] [PubMed]
  9. Lang, S. A., Johnson, B. D. & Cohen, E. (1975). J. Heterocycl. Chem.12, 1143–1153.
  10. Neese, F. (2022). WIREs Comput. Mol. Sci.12, e1606.
  11. Pinner, A. (1893). Ber. Dtsch. Chem. Ges.26, 2126–2135.
  12. Rigaku OD (2025). CrysAlis PRO. Rigaku Oxford Diffraction, Yarnton, England.
  13. Sheldrick, G. M. (2015). Acta Cryst. A71, 3–8.
  14. Tu, J., Svatunek, D., Parvez, S., Eckvahl, H. J., Xu, M., Peterson, R. T., Houk, K. N. & Franzini, R. M. (2020). Chem. Sci.11, 169–179. [DOI] [PMC free article] [PubMed]
  15. Voss, J., Stammler, H. G. & Sewald, N. (2025). Acta Cryst. E81, 164–168. [DOI] [PMC free article] [PubMed]
  16. Wang, Y., Shen, G., Li, J., Mao, W., Sun, H., Feng, P. & Wu, H. (2022). Org. Lett.24, 5293–5297. [DOI] [PubMed]
  17. Westrip, S. P. (2010). J. Appl. Cryst.43, 920–925.
  18. Xu, F. & Hu, W.-X. (2007). Acta Cryst. E63, o2397.
  19. Yim, J., Park, J., Lee, Y. & Park, J. (2026). Chem. Eur. J.32, e71028. [DOI] [PMC free article] [PubMed]
  20. Zhao, G., Li, Z., Zhang, R., Zhou, L., Zhao, H. & Jiang, H. (2022). Front. Mol. Biosci.9, 1055823. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, 1, 2, 3. DOI: 10.1107/S2056989026009527/wm5811sup1.cif

e-82-01221-sup1.cif (634.6KB, cif)

Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989026009527/wm58111sup2.hkl

e-82-01221-1sup2.hkl (106.8KB, hkl)

Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989026009527/wm58112sup3.hkl

e-82-01221-2sup3.hkl (170.4KB, hkl)

Structure factors: contains datablock(s) 3. DOI: 10.1107/S2056989026009527/wm58113sup4.hkl

e-82-01221-3sup4.hkl (95KB, hkl)
e-82-01221-1sup5.cml (4.2KB, cml)

Supporting information file. DOI: 10.1107/S2056989026009527/wm58111sup5.cml

e-82-01221-2sup6.cml (4.2KB, cml)

Supporting information file. DOI: 10.1107/S2056989026009527/wm58112sup6.cml

CCDC references: 2587346, 2587345, 2587344

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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