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PLOS One logoLink to PLOS One
. 2026 Oct 13;21(10):e0360626. doi: 10.1371/journal.pone.0360626

Operant House: A versatile open-source platform for automated operant conditioning testing of mice in home cages

Shintaro Otsuka 1,2,*,#, Yuriko Nakamura 1,#, Aya Ito-Ishida 1,3, Kunimichi Suzuki 1,4, Ayako Ishikawa 1,4, Keiko Matsuda 1,4, Shigetomo Suyama 1,4, Anis Contractor 2, Michisuke Yuzaki 1,4,*
Editor: Mario Treviño Villegas5
PMCID: PMC13660919  PMID: 42868172

Abstract

Operant conditioning is a powerful method for probing cognitive functions, yet its widespread use is constrained by low throughput, labor-intensive procedures, and high costs. Here, we developed “Operant House,” a low-cost, programmable device equipped with a touchscreen, retractable levers, and a water-reward port, designed to enable automated operant conditioning with minimal experimenter intervention in individually housed mice within their home cages. Although individual home-cage testing requires careful attention to animal welfare, the system permits continuous monitoring through live camera observation and recorded videos. As proof of concept, we implemented two cognitive protocols: a delayed non-match-to-position (DNMTP) test for assessing working memory and a two-choice spatial discrimination (TCSD) test involving working-memory-related processes and behavioral flexibility. Because working memory impairment is one of the earliest clinical features of Alzheimer’s disease (AD), we further applied these protocols to a knock-in mouse model carrying familial AD-associated amyloid precursor protein mutations (AppNL-G-F mice). Using this model, we detected significant working memory deficits as early as 5 months of age. At this age, we also detected subtle and spatially heterogeneous synaptic alterations in the prefrontal cortex, whereas conventional electrophysiological measures were largely preserved. Together, these findings highlight the Operant House as a cost-effective, scalable platform for assessing higher cognitive functions in mice, offering an accessible tool for investigating neurological and neuropsychiatric disease models.

Introduction

Operant conditioning has long been utilized in behavioral neuroscience to evaluate cognitive performance in a variety of species. In these tests, subjects are trained to perform specific behaviors, such as touching panels or pressing levers, in order to obtain rewards, such as water and food. Well-established protocols have been developed to measure various aspects of cognitive functions, including visual and spatial recognition, attention, impulsivity, working memory, and flexibility [1–5]. Operant conditioning serves as an unbiased assay, providing valuable insights into mouse cognition within the context of various neuropsychiatric and neurological disease models, including schizophrenia, autism spectrum disorders, and Alzheimer’s disease (AD). Conventional operant conditioning is typically conducted individually in a specialized apparatus under the supervision of an experimenter [6]. This process is labor-intensive and inefficient, as it must be repeated for each animal in a large cohort. Additionally, removing animals from their home cages—often during their inactive daytime period—for daily training sessions can induce significant stress and impaired performance. These limitations present substantial challenges to the widespread application of operant conditioning in disease model animals (Fig 1A).

Fig 1. Concept and the diagram of the Operant House.

Fig 1

(A, B) Concept. In the conventional setup (A), animals must be transferred between their home cages and a dedicated operant conditioning chamber by an experimenter. In contrast, in the low-cost Operant House setup (B), operant tasks are performed automatically within individual home cages in parallel. (C, D) Block diagrams. To capture IR camera images and control peripheral devices, version 1 (C) uses a laptop PC, whereas version 2 (D) employs a single-board computer (Raspberry Pi 4). To detect nose-poke actions, version 1 (C) uses a touchscreen equipped with an IR sensor (AirBar) placed on the LCD monitor, while version 2 (D) utilizes image recognition of mouse movements captured by an IR camera. Several optional devices are also available, including an operation monitor, lever modules, and an AirBar.

To overcome these challenges, various devices have been developed to enable automated operant conditioning in the home cage, thereby reducing experimenter intervention and allowing training during the animals’ active period. Importantly, Poddar et al. developed the Automated Rodent Training System (ARTS), a low-cost, modular system that enabled fully automated, high-throughput home-cage training of rats in complex sensorimotor tasks [7]. Francis and Kanold subsequently developed the Psibox, a low-cost system designed to fit within conventional mouse cages that enabled automated positive-reinforcement training in the home cage and demonstrated its utility in an auditory detection task [8]. These studies established the feasibility and advantages of scalable, automated operant training in the home-cage environment.

Other approaches have addressed complementary aspects of automated behavioral testing. For example, the CombiCage, which connects a home cage to a commercial operant chamber for the 5-choice serial reaction time task (5-CSRTT), was shown to achieve a tenfold increase in learning speed compared to conventional chambers for operant conditioning [9]. However, conducting simultaneous tests on multiple mice using such equipment is challenging due to its high cost and large size. An alternative approach is the IntelliCage system, which allows a group of individually tagged mice to be housed together in a single large cage for operant conditioning [10–15]. While the IntelliCage provides valuable population-level behavioral information, individual mouse behavior can be influenced by the presence of other mice in the same cage [16–19]. Building on these previous advances, for our intended applications we sought a platform that combined low per-unit cost and scalability with programmable touchscreen-based cognitive tasks, conventional lever-press paradigms, integrated video monitoring, and openly available hardware and software resources, while allowing each animal to be tested automatically in its own home cage.

To meet these requirements, we developed a compact and affordable operant conditioning device, referred to as the “Operant House.” The Operant House is a fully programmable device equipped with a touchscreen and retractable levers for operant tasks, along with a water port for reward delivery, all integrated into an individually housed home cage. Because each device accommodates a single animal throughout the experimental paradigm, individual housing is an inherent limitation of the present design and requires careful attention to animal welfare, including the potential effects of social isolation. The Operant House therefore enables live observation and retrospective inspection of recorded task videos to facilitate monitoring of the animals’ general condition and possible signs of stress. This platform can be easily and inexpensively (US $380–660 per unit), assembled using readily available materials and a 3D printer, following step-by-step instructions provided on our website (https://shintaro18.github.io/). As a result, this affordable platform enables automated behavioral testing with minimal experimenter intervention and parallel scaling of operant conditioning across individually housed mice in their home cages (Fig 1B).

As proof of concept, we present two standard protocols for assessing working memory using Operant House: the delayed non-matching-to-position (DNMTP) test and the two-choice spatial discrimination (TCSD) test. Working memory, the capacity to temporarily maintain goal-relevant information to guide behavior, is frequently impaired across neurological and neuropsychiatric disorders. Notably, working memory deficits associated with prefrontal cortex dysfunction emerge during the preclinical stage of AD [20–22] and in AD model mice such as 3xTg, APP/PS1 and 5xFAD, in which familial AD-related mutations are overexpressed [22–25]. The recently developed AppNL–G–F knock-in mice, which harbor three familial AD mutations in the amyloid precursor protein (APP) gene, are considered to more faithfully recapitulate human AD pathology because they lack artifacts caused by protein overexpression [26]. However, their behavioral phenotypes are generally milder than those of overexpression models, and the presence of early working memory deficits has remained inconsistent across studies [26–30]. Thus, using Operant House, we examined early cognitive performance in AppNL–G–F mice using the DNMTP and TCSD tasks. We found deficits in these tasks as early as 5 months of age. These findings indicate that Operant House provides a sensitive, standardized platform for detecting subtle cognitive deficits and may facilitate investigations of cognitive impairment in neurological and neuropsychiatric disorders.

Materials and methods

Automated operant conditioning using the Operant House

To begin habituation, mice were transferred from their home cages to the Operant House chamber between 9:00 a.m. and 12:00 p.m. The chamber was illuminated, and water was withheld until 9:00 p.m., resulting in 9–12 h of water restriction. Thereafter, the light was turned off, and mice were given ad libitum access to water until 9:00 a.m. the following day. From the second day onward, animals were subjected to either the DNMTP or TCSD paradigm.

In both paradigms, each daily session began at midnight (0:00), signaled by illumination of a green LED and a brief 1-s water delivery. Sessions continued until the animal obtained a predetermined number of water accesses or until the maximum session duration elapsed. During each session, the cumulative duration of water access was continuously monitored to ensure adequate opportunity for water consumption. If the cumulative water-access duration fell below the predefined level (DNMTP: 160 s; TCSD: 300 s), supplemental water access was provided immediately after the session. Outside of task sessions, mice did not have access to water (Fig 6A, 8A). The actual volume of water consumed by each mouse was not directly measured.

Fig 6. Working memory assessment using the DNMTP test in wild-type mice.

Fig 6

(A-E) Average correct rates were calculated across all trials per day for the VD1 (A), VD2 (B), DNMTP pre-acquisition (C), DNMTP acquisition with a 1-sec delay (D), and DNMTP working memory tasks (E). The dotted lines indicate chance-level performance. Note the decline in correct rates as delay intervals increased in the working memory task (E). (F-I) Comparison of correct rates between the first and last 20 trials of each task on the same day. No significant differences were observed for VD1 (F, GLMM: χ2 (1) = 0.23, OR = 1.16, p = 0.6340), VD2 (G, GLMM: χ2(1) = 3.22, OR = 1.38, p = 0.0726), DNMTP pre-acquisition (H, GLMM: χ2 (1) = 1.99, OR = 2.41, p = 0.1584), or DNMTP acquisition tasks (I, GLMM: χ2(1) = 0.64, OR = 1.13, p = 0.4229). (J) c-Fos expression. c-Fos-positive cell densities were significantly increased in M1, M2, and PL/IL in mice performing the DNMTP working-memory task compared with home-cage controls (LMM: task × region, F4,32 = 5.68, p = 0.0014, post hoc: M1 (p = 0.0496, Hedges’ g = 1.57), M2 (p = 0.0031, Hedges’ g = 2.47), PL/IL (p = 0.0001, Hedges’ g = 3.36)). The density of c-Fos-positive neurons was measured in brains fixed 60–90 min after initiating the task (with delays of 8–12 sec). (K-O) Average correct rates during VD1 (K), VD2 (L), DNMTP pre-acquisition (M), and DNMTP acquisition with a 1-sec delay (N). (O) Results of the DNMTP working memory task. Average correct rates in mice injected with saline (open circles) or ibotenic acid (filled circles). Blue-outlined symbols indicate trials that met the actual delay-time criteria (see main text). (P) Average actual delay duration during the DNMTP task. n = 4 mice (A-I); n = 6 and 4 mice for control and DNMTP task group, respectively (J); n = 3 mice (K-P) per group. GLMM (vs. chance; one-tailed): ***p < 0.0001 (A, C). GLMM with Holm-adjusted post hoc tests: ***p < 0.0001; *p < 0.05 (B, D, E, L, O). LMM with Holm-adjusted post hoc tests: ***p < 0.0001; *p < 0.05 (J). All graphs show mean ± SEM.

Fig 8. Protocol for two-choice spatial discrimination (TCSD) tests.

Fig 8

(A) The TCSD test consisted of two blocks: Block 1 included Visual Discrimination 1 (VD1) and VD2 tasks, and Block 2 was the TCSD task. The water restriction schedule is indicated above. (B) VD1 Task. Touching the illuminated panel was rewarded with water, while touching unilluminated panels resulted in a 2-sec timeout. If the subject failed to respond within 6 min, a 1-sec water reward was provided as a stimulus. (C) VD2 Task. This task was similar to VD1, with the omission of stimulus rewards and the addition of a punishment for incorrect responses consisting of a 10-sec light stimulus. (D) TCSD Task. At the start of the trials, the left or right panel was randomly designated as the correct choice. Selecting the correct panel resulted in a 2-sec reward, while choosing the incorrect panel triggered a 5-sec punishment. The correct panel switched after the subject achieved 7 correct responses out of the last 8 trials.

Body weight was monitored as part of the assessment of animal welfare during behavioral testing. To assess whether the DNMTP water-access regimen was associated with systematic changes in body weight, paired body-weight measurements obtained before and after testing were analyzed in six wild-type mice from independent experiments performed using Operant House version 2. These experiments used the same DNMTP water-access regimen (up to 80 water-access periods of 2 s each, corresponding to a maximum programmed water-access duration of 160 s per day), although other experimental parameters were not identical across all experiments. Pre- and post-testing body weights were compared using a paired t-test.

The ceiling light remained off during behavioral sessions and during the dark phase (9:00 p.m. to 9:00 a.m.), except when punishment was delivered.

Delayed non-matching to position (DNMTP) test

A mask with three apertures, each aligned with an illuminated rectangular panel on the LCD screen, was used to present visual cues. The protocol consisted of three blocks (Fig 5A). Mice were advanced to the next block either after a predetermined number of days or when their performance reached a specified criterion level. Daily trials in each block were concluded when the total number of correct responses reached 80 or when 10 hours had elapsed since the start of the trials.

Fig 5. Protocol for the delayed non-matching-to-position (DNMTP) test.

Fig 5

(A) The DNMTP experiment consisted of three blocks: Block 1 (visual discrimination tasks VD1 and VD2), Block 2 (DNMTP pre-acquisition task), and Block 3 (DNMTP task). The water restriction schedule is indicated above. (B) VD1 task. Touching an illuminated panel was rewarded with water, whereas touching an unilluminated panel resulted in a 2-sec timeout. If the subject did not respond to any panel within 6 min, a 1-sec stimulus water reward was delivered. (C) VD2 task. Same as VD1, except that incorrect responses were penalized with a 10-sec light stimulus and omission of the stimulus water reward. (D) DNMTP pre-acquisition task. Subjects were trained to complete a sequence of four touches to receive water. The first touch was on a blinking panel (left or right), the second and third touches were on the middle panel, and the fourth touch was on the panel opposite to the initial touch. (E) DNMTP task. Same as the pre-acquisition task, except that during the choice phase both left and right panels were illuminated. The interval between the second and third touches (on the middle panel) constituted the delay phase, starting at 1 sec until the criterion was met. (F) (Left) Delay settings in the DNMTP Task. Two delay schedules (A or B) were applied randomly to each trial, and the delay durations were progressively increased across days. (Right) Representative delay schedule for an animal on day 4 of the working memory phase.

Block 1−1: VD1 task (Fig 5B).

In each trial, one of the three panels was randomly illuminated. When the subject touched the illuminated panel, the panel light was turned off, the green LED at the water port was activated, and the subject was allowed access to water for 2 sec. The water nozzle retracted 2 sec after detecting the subject’s nose poke into the water slit. Touching an unilluminated aperture was considered an incorrect response, resulting in a 2-sec timeout. The inter-trial interval (ITI) was set at 5 sec. Since many subjects did not initially recognize the association between panels and the water reward, they were given 1-sec water access if they did not respond to the illuminated panels for longer than 6 min (stimulus reward). VD1 was performed until the subject achieved 5 successive correct responses, at which point they were moved to visual discrimination task 2 (VD2).

Block 1–2: VD2 task (Fig 5C).

VD2 differed from VD1 in two ways. Firstly, the stimulus reward was not provided. Secondly, mice were punished with chamber light illumination (10 sec) when touching unilluminated panels. In the experiments involving ibotenic acid injection, VD2 was repeated for four days before the DNMTP pre-acquisition task. For experiments with the Alzheimer’s disease model, VD2 was repeated until the correct response exceeded 50%. The learning curves in control animals were similar in both conditions. In the analysis of wild-type animals using Operant House Version 2, VD2 was repeated until the correct response exceeded 65% for two consecutive days.

Block 2: DNMTP pre-acquisition task (Fig 5D).

The DNMTP pre-acquisition task was designed to help mice recognize the rules employed in the DNMTP task. At the beginning of the sample phase, either the left or right panel flickered. When the mice touched the flickering panel, the panel turned off. After 1 sec, the middle panel illuminated, signaling the start of the delay phase. This sequence was repeated once more to indicate the end of the delay phase. The delay phase lasted 1 sec, followed by the choice phase. In the choice phase, the panel located opposite the sample panel was illuminated, and touching this panel led to access to a water reward for 2 sec. Touching the same panel that had been illuminated during the sample phase was considered an incorrect response and resulted in a 10-sec chamber illumination punishment. The ITI was 30 sec. The DNMTP pre-acquisition task was performed for one day in Version 1. In Operant House Version 2, the DNMTP pre-acquisition task was repeated until the correct rate exceeded 85% for two consecutive days.

Block 3: DNMTP task (Fig 5E, F).

The DNMTP task was similar to the DNMTP pre-acquisition task, with the difference being that in the choice phase, both panels on the left and right sides were illuminated. The subject was required to remember the location of the sample panel and touch the correct panel in the choice phase. During the acquisition trials, the duration of the delay phase was set to 1 sec. The trials were repeated until the total success rate reached 80% (for AppNL-G-F mice) or 75% (for experiments using Operant House Version 2) for two consecutive days. Most wild-type mice achieved this criterion within 1–2 weeks. Once the criterion was met, the duration of the delay was gradually increased (Fig 5F).

To prevent mice from adapting to a fixed pattern of delay changes, two delay conditions (delay A and delay B) were randomly assigned on a trial-by-trial basis. To ensure that the delay schedules were identical across animals, the same randomization seed was used for all mice. Trials assigned to delay A were used for the working memory analysis.

In some experiments, the actual delay duration, defined as the interval between touches of the sample and choice panels, was prolonged by behaviors such as eating or sleeping during the delay period and differed between experimental groups. The primary behavioral analyses therefore included all trials, and additional sensitivity analyses were performed using only trials in which the actual delay duration was below a predefined threshold (programmed delay × 1.3 + 10 s). The same criterion was applied to all groups and was based solely on actual delay duration, irrespective of trial outcome. Because selection based on actual delay duration could itself introduce bias, these delay-restricted analyses were considered sensitivity analyses rather than independent confirmatory tests. The numbers of retained and excluded trials are reported in the corresponding Results sections.

Two-choice spatial discrimination (TCSD) test

A mask with five apertures, each corresponding to illuminated rectangles on the LCD screen, was used to present visual cues. In the TCSD test, mice were required to memorize the correct position of the illuminated panel from the previous trial to receive a water reward. The experiment consisted of two blocks (Fig 8A). In the first block, mice were trained to associate touching the illuminated panels with the water reward by performing visual discrimination tasks (VD1 and VD2). The ITI was set at 5 sec. Daily trials were terminated either when the total number of correct responses reached 150 or when 6 hours had elapsed since the start of the trials.

Block 1−1: VD1 task (Fig 8B).

The VD1 task was conducted similarly to that of the DNMTP test (Fig 5B), with the exception that one of the five panels was randomly illuminated. The stimulus reward was also employed. Once the mice achieved five successive correct responses, they proceeded to the VD2 task.

Block 1–2: VD2 task (Fig 8C).

The VD2 task was also identical to the VD2 in DNMTP test, except that five panels were used. The VD2 task was repeated until the correct response rate exceeded 50%.

Block 2: TCSD task (Fig 8D).

In the TCSD task, two panels were simultaneously illuminated, and one of the two panels was randomly assigned as the correct choice at the beginning of trials. When the subject touched the correct panel, it was rewarded with 2 sec of water access. The incorrect choice was punished with chamber illumination for 5 sec. The position of the correct choice was reversed to the opposite side when the subject achieved more than 7 correct responses in the most recent 8 trials. The TCSD task was repeated for 3 days.

Lever-pressing conditioning test (S13 Fig)

Following a 24-hour water-restriction period, the subjects were placed in the chamber at 9:00 p.m. and the task commenced immediately. To begin trials, both right and left levers were inserted into the chamber and pressing either lever resulted in a reward of 2-sec access to water. Daily trials were terminated when the subject pressed the levers 80 times, which was followed by the retraction of the levers. A wire grid wall was inserted in the middle of the chamber on the first day to reduce the chamber space and prompt the mice to press the levers. The wire grid wall was removed on the second day.

Animals

All procedures involving animal care and use were approved by the Animal Resource Committee of Keio University (approval number 09050−5) and were conducted in accordance with institutional guidelines.

Homozygous AppNL-G-F knock-in mice were obtained from RIKEN Bioresource Center (#RBRC06344) and crossed with C57BL/6J (Crlj) to produce heterozygous breeding pairs. The resulting mice were used to obtain mice homozygous for AppNL-G-F, while wild-type littermates were used as control subjects. Up to four littermates were housed in the same cages (155 x 245 x 148 mm) under a 12:12 hour light/dark cycle at a temperature of 22 ± 1°C, with ad libitum access to food and water. During individual housing and behavioral testing in the Operant House, body weight was measured daily and the general condition of each mouse was assessed by visual inspection. Health monitoring included appearance and grooming, posture, spontaneous activity, apparent food and water intake, and signs of injury or distress. Animals showing substantial weight loss, abnormal behavior, or other signs of deteriorating health would have been evaluated promptly and, when appropriate, removed from the experiment in accordance with the approved humane-endpoint criteria. No animals met these exclusion or humane-endpoint criteria during the experiments.

For the DNMTP experiment, both female and male mice at the age of 5 months were used. In the TCSD experiment, we used 5-month-old male mice. Wild-type mice (C57BL/6J, 2 males and 3 females) at the age of 4 months were used for the lever-pressing conditioning test. Histological and electrophysiological analyses were conducted using male mice.

Ibotenic acid injection

Male wild-type mice (C57BL/6J, Japan SLC) at the age of 2 months were subjected to an intraperitoneal injection of a mixed anesthetic comprising medetomidine (0.3 mg/kg), midazolam (4 mg/kg), and butorphanol (5 mg/kg). Ibotenic acid (Abcam, ab120041) was prepared as a solution at a concentration of 10 mg/ml in saline and stored at −20°C until use. To verify the accuracy of the injection site, Red Retrobeads IX (LumaFluor) were added at a volume ratio of 1:20 to the ibotenic acid solution. A total of 400 nl of the resulting mixture was injected into the bilateral prefrontal cortex using a stereotaxic device (Stoelting) and Nanoliter 200 (World Precision Instrument). The injection coordinates were as follows: anterior-posterior (AP) +2.75 mm, medial-lateral (ML) 0.4 mm, and depth from the pia 0.8 mm. For the control group, saline and Red Retrobeads IX were injected. Following the surgery, the mice were allowed to recover for a period of five days before being subjected to the behavioral task.

Immunostaining of c-Fos after the DNMTP task

Female wild-type mice (C57BL/6J, Japan SLC) aged 2–3 months were trained in the DNMTP task following the protocol described above. On the day when the mice performed the task with a delay of 8–12 sec, they were perfused with 4% paraformaldehyde (PFA) in phosphate-buffered saline (PBS) 60–90 min after the task began. Control mice were housed individually and were also perfused on the same day. The brains were post-fixed overnight with 4% PFA, and 100 μm sections were obtained using a vibratome (DTK-1000, Dosaka).

The brain slices were treated with a blocking solution containing 2% donkey serum and 0.3% Triton-X, and then incubated with an anti-c-Fos antibody (mouse monoclonal [2H2], Abcam, ab208942, 1:1000) dissolved in the same blocking solution. After three washes with PBS, the sections were incubated with the secondary antibody (donkey anti-mouse Alexa 555, Invitrogen, 1:500) and Neurotrace 600/647 (ThermoFisher, 1:500) for three hours at room temperature. Following three additional washes with PBS, the sections were mounted in 70% glycerol, and images were captured using a 10 x objective lens on a confocal microscope (FV1000, Olympus). Projection images from five z-sections were analyzed using Fiji software. Images were first filtered with a median filter, and the density of c-Fos positive cells was quantified. Cells exhibiting c-Fos intensity three times greater than the background were defined as c-Fos positive cells. For each mouse, measurements obtained within each brain region were averaged to yield one mean density value per region for statistical analysis.

Immunostaining of Aβ and synaptic markers

Acute coronal slices of the medial prefrontal cortex (mPFC) with a thickness of 300 µm were obtained following the same procedure described in the electrophysiology section below. The slices were fixed in 4% PFA in PBS overnight at 4 °C. Cryoprotection was achieved by immersing the slices in a 30% sucrose solution in PBS, followed by embedding them in Tissue-Tek embedding medium (Electron Microscopy Sciences, Hatfield, PA, USA). The frozen samples were then cut into 20 μm-thick coronal sections using a cryostat (CM1850, Leica).

Sections were treated with a blocking solution consisting of 10% donkey serum and 0.1% Triton-X in PBS for 30 min and incubated overnight with primary antibodies in 0.1% Triton-X / PBS. The following primary antibodies were used: anti-VGluT1 (rabbit, Frontier Institute, 1:500), anti-VGAT (guinea pig, Frontier Institute, 1:1000), anti-Iba1 (rabbit, Sigma, 1:500), and anti-Aβ antibody (mouse monoclonal [82E1], IBL, 1:500). After three washes with 0.1% Triton-X / PBS, the sections were incubated for three hours at room temperature with the appropriate secondary antibodies (goat anti-mouse IgG1 Alexa 488, goat anti-mouse IgG1 Alexa 647, donkey anti-rabbit Cy3, or donkey anti-guinea pig Alexa 488, Jackson, 1:500) and Neurotrace 600/647 (ThermoFisher, 1:500). Following three additional washes with 0.1% Triton-X / PBS, the sections were mounted in Vectashield Mounting Medium (Vector Laboratories). Images were captured using either a confocal microscope (FV1000, Olympus) with a 4x objective lens or an Olympus SR-OSR microscope with either a 10 x or 100 x objective lens. For images obtained using the 100x objective lens, z-projected images from 23 z-sections were acquired and analyzed using Fiji software. The analysis was performed semi-automatically using a custom macro. Background noise was reduced by applying background subtraction using the rolling ball method (5–50 pixels). Regions of interest corresponding to Aβ plaques were determined based on intensity using Otsu binarization and size thresholding (above 50 μm2). The mean signal intensity outside the plaques was obtained from three different positions within areas of 370 μm2.

Electrophysiological recordings in acute cortical slices

Coronal slices of the mPFC with a thickness of 300 µm were prepared from 5-6-month-old mice. The mice were anesthetized with isoflurane, and acute brain slices were obtained using a vibratome (DSK-1000N, Leica) in chilled (0–4 °C) normal artificial cerebrospinal fluid (ACSF) containing (in mM): 126 NaCl, 3 KCl, 1.3 MgSO4, 2.4 CaCl2, 1.2 NaH2PO4, 26 NaHCO3, and 10 glucose. The slices were maintained at a temperature of 34 °C with 95% O2 and 5% CO2 during the cutting procedure. Before recording, the slices were incubated for a minimum of 30 min in normal ACSF at 34 °C, which was continuously bubbled with 95% O2 and 5% CO2.

Pyramidal neurons were identified based on their characteristic pyramidal soma shape using infrared differential interference contrast optics (BX51, Olympus) and a × 60 water immersion objective lens (LUMPlanFI/IR, NA 0.9) along with a CCD camera (Cool SNAP Kino, Teledyne Imaging). Whole-cell patch-clamp recordings were performed on neurons in layer 2/3 and layer 5 of the mPFC, including the anterior cingulate, prelimbic, and infralimbic areas, at room temperature. The patch pipettes had a resistance of 4–6 MΩ and were filled with an intracellular solution consisting (in mM): 130 K-gluconate, 8 KCl, 1 MgCl2, 0.6 EGTA, 10 HEPES, 3 MgATP, 0.5 Na2GTP, and 10 Na-phosphocreatine (pH 7.3 with KOH).

To assess the intrinsic membrane properties and excitability of pyramidal neurons, 500-ms step currents of varying amplitudes were injected in current-clamp mode. Current injection experiments were performed within 5 min of establishing the whole-cell patch-clamp configuration.

For measuring evoked EPSCs/IPSCs and miniature EPSCs/IPSCs, we used an internal solution containing (mM) 130 Cs-gluconate, 6 KCl, 10 NaCl, 10 HEPES, 0.16 CaCl2, 2 MgCl2, 0.5 EGTA, 4 Na-ATP, and 0.4 Na-GTP (pH 7.3, adjusted with CsOH). EPSCs and IPSCs were recorded at holding potentials of −70 mV and 0 mV, respectively. To assess the inhibitory-to-excitatory (I/E) balance, EPSCs and IPSCs were evoked by electrical stimulation at 20-sec intervals using a pair of bipolar tungsten electrodes (FHC), positioned near the recorded neuron (S20A Fig). Ten to twenty consecutive traces were averaged to obtain the mean EPSC or IPSC. The baseline current was defined as the average current in a 20-ms window prior to the electrical stimulation, and the peak EPSC and IPSC amplitudes were calculated as the absolute value of the negative or positive peak current relative to the baseline. Miniature EPSCs and IPSCs were recorded in the presence of 1 μM TTX. The experimental setup included a Multiclamp 700B amplifier, Digidata 1440A A/D converter, and pClamp10 software (Molecular Devices). Data were digitized at 20 kHz, low-pass filtered at 4 kHz, and analyzed using custom-made MATLAB scripts (MathWorks). Only recordings from cells with a seal resistance > 1 GΩ and a series resistance < 35 MΩ were included in the analysis.

Electrophysiological recordings in acute hippocampal slices

Hippocampal slices with a thickness of 300 μm were prepared from 5-month-old AppNL-G-F mice and littermate wild-type mice. The mice were decapitated under isoflurane anesthesia. For the dissection, a cutting solution composed of the following concentrations (in mM) was used: 229 mannitol, 3 KCl, 23 NaHCO3, 1.23 NaHPO4, 0.5 CaCl2, 3 MgCl2, and 10 glucose, with a pH of 7.4. The cutting solution was continuously bubbled with a mixed gas of 95% O2 and 5% CO2. After the dissection, the slices were kept at room temperature in ACSF solution with the following concentrations (in mM): 124 NaCl, 3 KCl, 2 CaCl2, 2 MgCl2, 1.23 NaH2PO4, 26 NaHCO3, and 10 glucose, with a pH of 7.4. The ACSF solution was also bubbled with a mixed gas of 95% O2 and 5% CO2.

Field excitatory postsynaptic potentials (fEPSPs) were recorded in the stratum radiatum of the CA1 region using the MED64 system (Alpha MED Scientific). The hippocampal slices were placed on the MED64 probe, which consisted of an array of 64 planar microelectrodes arranged in an 8 x 8 pattern (P515A, Alpha Med Scientific). The recording probe covered the entire hippocampal CA1 region. During the experiments, the slices were continuously perfused with ACSF at a rate of 1.5 ml/min at room temperature. Monopolar, biphasic constant current pulses with a duration of 0.1 msec were applied to the Schaffer collateral pathway at 30-sec intervals for electrical stimulation. The amplitude of the electrical stimulation was determined based on the input-output curve, and we used 1/3 of the amplitude that induced the maximum fEPSP response.

To induce long-term potentiation (LTP), a stable baseline of fEPSP amplitude was maintained for at least 10 min, followed by high-frequency stimulation consisting of 100 Hz and 100 pulses. The data were analyzed using the data acquisition software Mobius (Alpha-Med Scientific).

Data analysis and statistics

Statistical analyses were performed in R (version 4.5.1) using RStudio version 2026.07.1.

Behavioral performance was analyzed using generalized linear mixed-effects models (GLMMs) with a binomial distribution and logit link function (lme4 package). Depending on the analysis, genotype or treatment condition, session or another repeated-measure factor (e.g., delay duration or within-session trial position), and their interaction, where applicable, were included as fixed effects, with mouse identity included as a random effect to account for repeated measurements within individual animals. Fixed effects were evaluated using Type III Wald chi-square tests (car package). Post hoc comparisons were performed using estimated marginal means (emmeans package), with p values adjusted for multiple comparisons using the Holm method. Effect sizes in GLMM analyses are reported as odds ratios (ORs). Simulation-based residual diagnostics showed no significant evidence of non-uniformity, over- or underdispersion, or excess outliers in any of the datasets analyzed using GLMMs. Residual uniformity, dispersion, and outliers were assessed using the testUniformity, testDispersion, and testOutliers functions, respectively, in the DHARMa package. For the comparison of correct-response rates during the first and last 20 trials in AppNL-G-F mice shown in Fig 10K, the corresponding GLMM yielded a singular fit. This analysis was therefore performed using a binomial generalized linear model (GLM), with trial period (first versus last 20 trials), session, and mouse identity included as fixed effects.

Fig 10. Male AppNL−G−F mice exhibit impaired performance in the TCSD task at 5 months of age.

Fig 10

(A, B) The number of days required to reach the performance criterion for the VD1 (A) and VD2 (B) tasks was comparable between male AppNL−G−F and wild-type (wt) mice. (C) TCSD task performance. Male AppNL−G−F mice exhibited lower correct-response rates than wild-type mice. Blue-outlined plots represent selected trials that met the criterion for actual delay duration. (D) Performance over time. Correct-response rates for each 50-trial bin during the first 350 trials revealed poorer performance in AppNL−G−F mice than in wild-type mice. (E) Reversals. The number of reversals per day was reduced in AppNL−G−F mice. (F) Trial efficiency. AppNL−G−F mice required more trials per reversal on average than wild-type mice. (G) Trial outcomes. AppNL−G−F mice exhibited a lower number of correct trials, whereas the number of incorrect trials was comparable between genotypes. (H) Touch intervals. AppNL−G−F mice showed longer average intervals between touches, whereas the actual delay durations were comparable between genotypes when the analysis was restricted to selected trials meeting the predefined delay-time criterion. (I) Proportion of trials meeting the predefined actual-delay criterion. More than half of the trials met this criterion in both genotypes. (J) Correct-response rates for successive 10-trial bins across daily sessions. The first 11 bins of each day are shown; no obvious systematic decline in correct-response rate was observed over the course of each session. (K) Correct-response rates during the first and last 20 trials of each session. No significant difference was detected between the first and last 20 trials in either genotype. Mann–Whitney U test (A, B); GLMM (C, D); LMM (E–H); GLMM for wild-type mice and binomial GLM for AppNL−G−F mice (K). No inferential statistical test was performed for (I) or (J). Holm adjustment was applied to post hoc comparisons where applicable. ***p < 0.0001; **p < 0.01; *p < 0.05. n = 7 per genotype.

For continuous outcomes involving repeated measurements, comparisons were performed using linear mixed-effects models (LMMs). For one-group analyses, session or the relevant repeated-measure factor was included as a fixed effect. For two-group analyses, genotype (or treatment), the repeated-measure factor, and their interaction were included as fixed effects. In both models, mouse identity was included as a random intercept to account for repeated measurements within individual mice. LMMs were fitted using the lmer function in the lme4 package with restricted maximum likelihood (REML) estimation. Main effects and interactions were evaluated using Type III F tests with the Kenward–Roger approximation for denominator degrees of freedom (lmerTest package). When appropriate, post hoc comparisons were performed using estimated marginal means calculated with the emmeans package, with p values adjusted for multiple comparisons using the Holm method. Cohen’s d was calculated using the eff_size function in the emmeans package and converted to Hedges’ g using the small-sample correction factor. Hedges’ g was reported as an effect-size estimate for pairwise comparisons where applicable. Residual normality was assessed using the Shapiro–Wilk test (shapiro.test), and singularity was assessed using isSingular in the lme4 package. All datasets analyzed using LMMs showed no significant deviation from residual normality and no evidence of singular fits. In the revised mixed-effects analyses, no observations were excluded solely on the basis of statistical outlier testing.

For comparisons between two independent groups not involving repeated measurements, Welch’s t-test or the Mann–Whitney U test was used, as appropriate. Paired comparisons were performed using the paired t-test where appropriate. Differences between cumulative distributions were assessed using the two-sample Kolmogorov–Smirnov test. For the histological analyses shown in S19 Fig, measurements from multiple sections were averaged within each mouse, and the individual mouse was treated as the experimental unit. For S19C Fig, mouse-level averages were compared between genotypes using Welch’s t-test. For S19D Fig, inside–outside differences were calculated for each section and averaged within each mouse, and the resulting mouse-level paired measurements were compared using a paired t-test.

For the electrophysiological analyses shown in S20 and S21 Fig, all genotype comparisons were performed using heteroscedastic linear mixed-effects models fitted with the lme function in the nlme package. Individual cells (S20 Fig) or slice recordings (S21 Fig) were retained as observational units, with genotype included as a fixed effect and mouse identity as a random intercept to account for the non-independence of multiple recordings obtained from the same animal. Genotype-specific residual variances were allowed using the varIdent variance structure. Genotype effects on mean electrophysiological measures were evaluated by F tests of the fixed genotype effect. Normality of normalized residuals was assessed using the Shapiro–Wilk test.

For the analysis of cell-to-cell variability in the I/E ratio in S20C Fig, a homoscedastic model assuming a common residual variance across genotypes was compared with the heteroscedastic model allowing genotype-specific residual variances. Both models were fitted by maximum likelihood, and model fits were compared using a likelihood-ratio test. Because normalized residuals from models fitted to untransformed I/E ratios deviated significantly from normality, I/E ratios were natural-log transformed before the final analysis.

Statistical significance was defined as p < 0.05. Omnibus tests of fixed effects were not adjusted for multiple comparisons; p values for post hoc pairwise comparisons were adjusted using the Holm method. All tests were two-sided unless otherwise specified. Prespecified comparisons with chance-level performance were one-sided. Mean correct-response rates were calculated for each animal and session for graphical presentation, whereas inferential analyses of operant-task performance were based on trial-level correct/incorrect outcomes in the binomial GLMMs or, for the AppNL-G-F analysis shown in Fig 10K, the binomial GLM described above.

Figure preparation

All icons and schematic illustrations were created by authors of this article using the Shapes feature in Microsoft PowerPoint. No third-party assets, logos or illustrations were used.

Results

Design of the Operant House for automated operant conditioning in individual home cages

Lever-press tasks have been widely used for operant conditioning in rodents. More recently, operant paradigms using visual stimuli presented on liquid crystal display (LCD) touchscreens combined with nose-poke responses have been developed, enabling assessment of higher-order cognitive functions for non-human primate and rodent models [31]. However, in most operant conditioning paradigms, individual animals must be transferred from their home cages to dedicated operant chambers for each session (Fig 1A). This process is labor-intensive for experimenters and can impose additional stress on the animals. To address these issues, we developed an automated operant conditioning system, the Operant House, which allows each mouse to perform operant tasks within its own individual home cage (Fig 1B). The Operant House was designed according to the following basic principles:

  • 1

    Task execution in individual home cages

To maintain compatibility with previously reported touchscreen-based operant chambers [32], we used home cages with the same internal dimensions (215 × 145 × 205 mm) and replaced one wall of each home cage with an LCD screen. For task control, each home cage was equipped with its own computer: either a laptop PC (Fig 1C) or a single-board computer (Raspberry Pi 4; Fig 1D).

  • 2

    Use of a conventional LCD instead of an LCD touch panel

Commercial LCD touch panels are costly and, in our hands, did not reliably detect mouse nose pokes because their sensing systems are calibrated to detect larger contacts, such as human fingertips. We therefore placed an additional masking wall in front of a conventional LCD monitor with one or more small apertures and detected nose pokes into these apertures using infrared (IR) light as operant responses.

  • 3

    Long-term, fully automated task performance with minimal stress in a standard housing environment

As in regular housing cages, wood chips were used as bedding inside the operant chamber. A white light-emitting diode (LED) mounted on the ceiling was turned on during the light phase to maintain circadian rhythm, while operant tasks were conducted during the dark phase, when mice are most active. Mouse behavior and task progression were continuously monitored and recorded with an IR camera. To facilitate learning, water access during the dark phase was restricted to a 10-h period, during which mice could obtain water by performing the operant task correctly. A green LED served as the conditioned stimulus signaling a correct response, whereas brief illumination of the ceiling white LED was used as a mild aversive stimulus after incorrect responses.

Although the system is designed for individually housed mice, it also enables continuous monitoring. Task operation itself does not require continuous user intervention; however, mice were checked daily, including measurement of body weight and visual assessment of their general condition, as described in the Methods. The system can also be accessed and controlled remotely via software such as TeamViewer or Chrome Remote Desktop. Through this remote desktop access, users can monitor live videos from the IR camera mounted on the ceiling of the device or review recorded videos from task sessions to assess task engagement, animal health status, signs of stress, and proper device operation from an office computer. Task outcomes can also be sent automatically by e-mail.

  • 4

    Facilitation of dissemination to the research community

The Operant House was built from inexpensive, widely available components. All tasks were controlled by open-source Python programs with a graphical user interface. The software implements a variety of operant paradigms, and users can modify the programs as templates for their own task designs.

Development of Operant House version 1

As a first prototype based on the above design, we constructed Operant House version 1 using polyvinyl chloride (PVC) plates for the chamber walls (Fig 2A). A low-cost laptop computer controlled the entire system and interfaced via a universal serial bus (USB) connection with a microcontroller board (Arduino Uno, Arduino LLC, Italy), which drove the peripheral devices (Fig 1C). Nose pokes directed toward visual stimuli presented on the LCD monitor and made through the apertures in the masking screen were detected by an IR sensor (AirBar, Neonode, Sweden, or NNAMC3460PCEV, Neonate Inc.; Fig 2B–D).

Fig 2. Assembly of the Operant House version 1.

Fig 2

The front wall of the Operant House is composed of an LCD monitor (A) and a screen mask with open windows (B). Food is continuously available on the floor (C). An IR sensor generates an infrared field on the monitor surface to detect nose pokes (D). When the operant task is successfully completed, a water bottle tilts forward through a gap in the rear wall (E), allowing the mouse to drink (F). A green LED below the gap lights up as a cue indicating a reward. During the nighttime, an IR LED above the gap illuminates the area, and the drinking behavior of the mouse is recorded by an IR camera mounted on the ceiling (G). White LEDs are also installed on the ceiling (A); they illuminate the cage during the day and briefly turn on at night as a punishment.

Upon a correct response, a green LED mounted on the wall opposite the LCD was illuminated, and a water-bottle holder behind a slit was rotated into the cage interior by a servo motor, presenting the spout to the mouse (Fig 2E, F). Drinking behavior was also monitored using an IR camera (Fig 2G).

Development of improved Operant House version 2

In version 1, construction required cutting PVC sheets into multiple sizes and gluing them together. Consequently, scaling up to many Operant House units substantially increased production effort and cost. To overcome this limitation, we developed an improved Operant House version 2, in which the chamber is fabricated by fused deposition modeling (FDM) 3D printing using polylactic acid filament. The use of 3D printing also increases the flexibility in chamber geometry. For example, one wall can be replaced with a panel containing a retractable lever, enabling conventional lever-press tasks (S13A–S13D Fig) and thereby greatly expanding the range of operant paradigms that can be implemented within the Operant House.

In version 1, each Operant House was equipped with a laptop PC for task control, requiring additional space to dissipate the heat generated by multiple laptops. In version 2, we replaced the laptop PCs with single-board computers (Raspberry Pi 4B) equipped with secure digital (SD) memory cards for data storage (Fig 1D). While the original IR sensors could still be used for nose-poke detection (Fig 4C), we also implemented a lower-cost system based on IR LEDs and an IR camera (Fig 3A, B; Fig 4B). In addition to reducing costs, this new detection system has an advantage that its sensitivity can be adjusted by changing the position of the detection zone (Fig 3C).

Fig 4. Dimensions of the Operant House Version 2.

Fig 4

(A) External view of the Operant House. (B-C) Dimensions of the Operant House configured for IR camera-based nose-poke detection (B) and IR sensor bar-based nose-poke detection (C).

Fig 3. Assembly of Operant House version 2.

Fig 3

Similar to version 1, the Operant House consists of an LCD monitor and a screen mask with open windows, with food continuously available on the floor. When the operant task is successfully completed, a water bottle tilts forward through a gap in the rear wall, enabling the mouse to drink (A). Unlike version 1, nose-poke actions are detected using image recognition of mouse movements, eliminating the need for an IR sensor (B). This is achieved by adding four IR LEDs to the ceiling. The sensitivity of nose-poke detection can be fine-tuned by shifting the detection points in the image captured by the IR camera (C). All devices are controlled by a single-board computer (Raspberry Pi 4).

Taken together, these improvements made Operant House version 2 easier to construct, substantially reduced the cost (to approximately US$380 per unit), and facilitated automated operant testing of multiple individually housed mice in parallel.

Implementation of Operant House version 2

To implement Operant House version 2, we used parts that are widely available worldwide (S1 Fig) and standard tools commonly found in biological research laboratories (S2 Fig). Chamber components were fabricated using a FDM 3D printer (S3 Fig), assembled (S4 Fig), and then equipped and wired with the Raspberry Pi, LEDs, Arduino Uno, and other electronic components (S5–S11 Fig). Finally, we configured the Raspberry Pi and installed the Operant House software (S12 Fig).

The completed Operant House version 2 had the following specifications (Fig 4):

  • Illuminance inside the chamber when the ceiling light was on: 380 lux, measured at the cage floor.

  • Camera: 30 frames/s; data size ~35.6 MB/h (recorded at 5 frames/s, 320 × 240 pixels)

  • Noise level: fan, +0 dB; servo motor, +10–17 dB (relative to a baseline ambient noise level of 40 dB)

  • Touch (nose-poke) detection: sampling frequency, 30 Hz; automated counts matched manual counts by a single observer during the first 30 min of the VD2 session (S1 Video).

  • Long-term operation: overall system stable for >1 month; water-tank capacity sufficient for ~2 weeks; bedding replacement required approximately every 3 weeks

  • Implemented operant tasks: visual discrimination, spatial discrimination, DNMTP, pattern separation tasks (TCSD and trial-unique nonmatching-to-location [TUNL]), delayed alternation, habit formation tasks, probabilistic reversal learning, Go/No-Go, lever-press tasks, allocentric/egocentric learning paradigms, and 5-CSRTT. Of these, visual discrimination, lever pressing, DNMTP, and TCSD were experimentally evaluated in mice in the present study. TUNL has been evaluated in a separate study [39], whereas the remaining paradigms have been implemented and technically tested but have not yet undergone systematic behavioral validation in animals.

  • Water delivery: 25–35 μl per lick.

  • Although the 3D-printed surface was less smooth than polyvinyl chloride (PVC) or aluminum, which are commonly used in operant chambers, its surface quality was sufficient for housing mice (S11C–S11E Fig).

Assessment of lever pressing tasks using Operant House

To assess the efficiency of simple operant conditioning in the Operant House, we trained mice on a two-lever pressing task in which a press on either lever delivered a water reward. On day 1, mice were introduced to the lever–reward contingency while their movements were constrained by placing a wire grid in front of the levers; from day 2 onward, the grid was removed to allow unrestricted access. Lever-press rates increased across training days (S13E Fig). Consistent with this improvement, mice required approximately 9 min and 4 min to obtain the first 30 lever presses on days 2 and 3, respectively (S13F Fig).

For comparison, using a conventional paradigm in which animals are transferred from their home cages to a dedicated operant chamber, mice required 50 min and 28 min on days 2 and 3, respectively, to reach 30 lever presses [4]. Thus, mice acquired lever pressing rapidly under the Operant House training conditions, although direct quantitative comparison with the previous study is limited by differences in experimental conditions and training procedures.

Assessment of working memory through the DNMTP task using Operant House

To evaluate the performance of the Operant House, we designed a working memory assessment protocol using a DNMTP task with Operant House version 1. In this test, the subject was required to remember the position of one of three illuminated panels during the sample phase and to choose the panel on the opposite side during the choice phase to receive a water reward. The protocol consisted of three blocks (Fig 5A, refer to Methods for detailed description):

In the first block, mice performed visual discrimination tasks, VD1 and VD2, and learned to touch illuminated panels to receive water rewards (Fig 5B, C). By the end of day 1, the average correct rate for the VD1 task in wild-type mice was significantly higher than the chance level (Fig 6A, GLMM: OR = 1.87, one-tailed p < 0.0001). Throughout the VD2 task, the success rate gradually improved, reaching 76.5% on the fourth day (Fig 6B, GLMM, session effect: χ2(3) = 21.45, p < 0.0001; day 4 vs day 1: OR = 1.96, p < 0.0001).

In the second block, mice performed the DNMTP pre-acquisition task. Mice received a water reward after touching the correct panel during the choice phase. The correct panel was on the opposite side of the panel presented during the sample phase. The choice phase followed the sample phase after a fixed 1-sec delay phase. In this DNMTP pre-acquisition task, the correct panel was explicitly illuminated during the choice phase to help the mice recognize the rules of the DNMTP task (Fig 5D). Performance was significantly above chance level (Fig 6C; GLMM: OR = 13.33, one-tailed p < 0.0001).

In the third block, mice first performed the DNMTP acquisition task with a fixed 1-s delay. The success rate increased daily in wild-type mice, reaching 76.5% within 5 days (Fig 6D; GLMM; session effect: χ2(4) = 65.14, p < 0.0001; day 5 vs day 1: OR = 2.60, p < 0.0001).

In the third block, working memory was assessed by increasing the duration of the delay phase (Fig 5E) according to a set schedule (Fig 5F). The correct response rate decreased with increasing delay duration (Fig 6E, GLMM; delay effect: χ2(7) = 61.75, p < 0.0001; delay 20 s vs delay 1 s: OR = 0.32, p < 0.0001).

Motivation is a critical factor influencing behavioral outcomes in tasks. Because the level of thirst influences motivation in our tasks, the correct rate and the frequency of trials may decline with reduced motivation after repeating trials and obtaining rewards. However, we did not observe a decrease in correct rates as trials were repeated each day. The correct rates in the first and last 20 trials were similar in VD1, VD2, DNMTP pre-acquisition, and DNMTP acquisition tasks (Fig 6F-I). This trend was reflected in the average correct rate for 10-trial bins each day (S14A–S14E Fig). Most mice completed trials after achieving 80 correct responses (S14F–S14J Fig). The average duration of the entire trials per day was less than 3 hours except for the DNMTP task, which included delay phase between sample and choice phase (S14K–S14O Fig). The duration of each trial in the VD2 and DNMTP acquisition tasks was similar across repeated trials in a day (LMM: VD2, F3, 9 = 1.73, p = 0.23, Hedges’ g = 1.39 for day 4 vs day 1; DNMTP acquisition, F4, 12 = 1.22, p = 0.35, Hedges’ g = 1.16 for day 5 vs day 1; S6F, S6I Fig). These findings provided no evidence of a systematic decline in task engagement across repeated trials within a session. In six wild-type mice from independent Operant House version 2 experiments using the same programmed DNMTP water-access regimen, body weight showed no significant group-level change between measurements obtained before and after testing (22.47 ± 0.52 g vs. 21.89 ± 1.11 g, respectively; paired t-test, t(5) = −0.65, p = 0.545).

To identify the brain regions responsible for the DNMTP task, we performed immunostaining for c-Fos, a marker of neuronal activation. We observed significantly increased c-Fos immunoreactivity in the higher motor area (M1 and M2) and the prelimbic and infralimbic cortex (PL/IL) of mice that underwent the DNMTP task compared to homecage control mice (LMM: task × region, F4,32 = 5.68, p = 0.0014, post hoc: M1 (p = 0.0496, Hedges’ g = 1.57), M2 (p = 0.0031, Hedges’ g = 2.47), PL/IL (p = 0.0001, Hedges’ g = 3.36); Fig 6J).

To further examine the contribution of these c-Fos-positive regions to DNMTP performance, we induced bilateral lesions of the PL/IL and M2 by injection of ibotenic acid (IBO). Across the training blocks, IBO- and saline-injected mice showed comparable correct response rates during repeated trials (Fig 6K–N; S15A–S15D Fig). In addition, both groups completed the task similarly, reaching 80 correct responses (S15E–S15H Fig) within comparable time periods (S15I–S15P Fig), indicating that motivation was not detectably affected by IBO treatment. During the working memory phase, IBO-treated mice showed significantly lower performance than saline-treated mice (Fig 6O; GLMM: χ2(1) = 5.98, OR = 0.70; p = 0.0145).

Behavioral observation revealed that mice occasionally engaged in eating or sleeping during the delay phase, resulting in prolongation of the actual delay duration, defined as the interval between touches of the sample and choice panels (Fig 6P). To assess whether variability in actual delay duration contributed to the observed group difference, we performed an additional sensitivity analysis restricted to trials in which the actual delay duration was within 1.3 times the programmed delay plus 10 s. This criterion retained 1,231 of 1,783 trials (69.0%) in saline-treated mice and 1,309 of 2,013 trials (65.0%) in IBO-treated mice; consequently, 552 (31.0%) and 704 (35.0%) trials, respectively, were excluded. The mean actual delay duration did not differ between IBO- and saline-treated mice under this criterion (Fig 6P, blue outlines). The lower correct-response rate in IBO-treated mice observed in the primary all-trial analysis was also detected in this delay-restricted sensitivity analysis (GLMM: χ2(1) = 4.07, OR = 0.71; p = 0.0435; Fig. 6O, blue outlines).

The DNMTP task can be conducted using Operant House Version 2 with a slight modification in the protocol (S16A–S16F Fig), as described in the Methods section. Together, these results suggest that the DNMTP task effectively assesses working memory in wild-type mice, which is consistent with a contribution of PL/IL and/or M2.

The DNMTP task detected early working memory deficit in female AppNL-G-F mice

In humans, a working memory deficit is suggested to be one of the earliest signs of pre-symptomatic AD [20–22]. However, the presence of early working memory deficits has remained inconsistent across studies using AppNL–G–F knock-in mice, which are considered to more faithfully recapitulate human AD pathology [26–29]. Thus, to test the effectiveness of the Operant House, we assessed working memory in AppNL-G-F mice using the DNMTP test.

AppNL-G-F mice showed a higher correct-response rate in VD1, whereas correct-response rate did not differ significantly between genotypes in VD2 or the DNMTP pre-acquisition task (GLMM; VD1, χ2(1) = 5.39, OR = 1.56; p = 0.020; VD2, χ2(1) = 1.63, OR = 1.35; p = 0.202; pre-acquisition, χ2(1) = 0.04, OR = 1.09; p = 0.835) (Fig 7A-C). However, the performance in DNMTP acquisition task differed significantly between wild-type and female AppNL-G-F mice. While wild-type mice reached the criteria of the DNMTP acquisition task (success rate > 80% for 2 successive days with 1-sec fixed delay) in 12 ± 1 days (mean ± sem), female AppNL-G-F homozygous mice took 22 ± 3 days, significantly longer than the wild-type (Mann-Whitney U test: p = 0.0097) (Fig 7D, E).

Fig 7. Female AppNL−G−F mice exhibit working memory deficits in the DNMTP test at 5 months of age.

Fig 7

(A-C) Average correct rates for VD1 (A), VD2 (B), and DNMTP pre-acquisition tasks (C) in wild-type (open circles) and AppNL−G−F (filled circles) mice. Dotted lines indicate chance-level performance. (D-E) Daily improvements in correct rates during the DNMTP acquisition task with a 1-sec delay were slower in AppNL−G−F mice (D). These mice required more days to reach the performance criterion (80% correct for two consecutive days) (E). (F) In the DNMTP working memory task, correct rates in AppNL−G−F mice dropped sharply when the delay was 2 sec or longer. Blue-outlined plots represent trials meeting the criteria for actual delay times (refer to the main text). (G) No difference in actual delay times was observed between wild-type and AppNL−G−F mice when comparing trials that met the criteria for actual delay time (Blue-outlined plots). (H) AppNL−G−F mice performed more total trials in the DNMTP working memory task. This increase was observed in incorrect trials but not in correct trials. GLMM: *p < 0.05 (A). Mann-Whitney U test: *p < 0.05 (E). GLMM and LMM with Holm-adjusted post hoc tests: ***p < 0.0001; ** p < 0.005; *p < 0.05 (F, H). n = 6 mice per genotype.

After reaching the criteria above, the mice performed DNMTP task with a longer delay time to assess working memory. The correct rate in female AppNL-G-F mice showed a significant reduction compared to wild-types when the delay time was longer than 2 sec (GLMM; χ2(1) = 6.72, OR = 0.68; p = 0.0095) (Fig 7F). Consequently, the number of total and incorrect responses per day was significantly higher in AppNL-G-F mice (LMM; total: genotype × session, F6, 60 = 4.24, p = 0.0013, Hedges’ g: day 5, 1.90; day 7, 1.99; day 9, 1.63; incorrect; genotype: F1, 10 = 10.95, p = 0.0079, Hedges’ g = 1.52) (Fig 7H).

To assess the impact of motivation levels, we examined the temporal variation of correct responses over trials within a day. Neither wild-type nor AppNL-G-F mice showed any difference in the correct rate with repeated trials (S17A–S17D Fig). In addition, no difference was observed in the total number of trials or the average time spent per trial (S17E–S17P Fig). These results indicate impaired DNMTP performance in female AppNL-G-F mice, without evidence of a systematic reduction in task engagement or basal activity.

Similar to ibotenic acid-treated animals, AppNL-G-F mice tended to show prolonged actual delay durations, which could potentially confound the interpretation of working memory performance (Fig 7G). The primary analysis therefore included all trials, and an additional sensitivity analysis was performed using only trials that met the predefined actual-delay criterion (programmed delay × 1.3 + 10 s). This criterion retained 2,756 of 3,403 trials (81.0%) in wild-type mice and 2,909 of 3,700 trials (78.6%) in AppNL-G-F mice; 647 (19.0%) and 791 (21.4%) trials, respectively, were excluded. Thus, the proportions of retained trials were similar between genotypes. Among the retained trials, mean actual delay durations were comparable between genotypes (Fig 7G, blue outlines). The lower correct-response rate in AppNL-G-F mice observed in the primary all-trial analysis was also detected in this delay-restricted sensitivity analysis (GLMM: χ2(1) = 7.71, OR = 0.61, P = 0.0055; Fig 7F, blue outlines).

Interestingly, male AppNL-G-F mice did not exhibit any differences in the VD1/2 or DNMTP tasks (S18 Fig) (GLMM: VD1, χ2(1) = 2.01, OR = 1.22; p = 0.139; VD2, χ2(1) = 0.17, OR = 1.09; p = 0.680; DNMTP pre-acquisition, χ2(1) = 1.07, OR = 1.76, p = 0.305; DNMTP working memory, all trials, χ2(1) = 0.16, OR = 0.91; p = 0.687; selected trials, χ2(1) = 0.100, OR = 0.93; p = 0.7514; Mann-Whitney U test: Days to criteria in the DNMTP acquisition, p = 0.313). Taken together, these results indicate that sex-dependent working memory deficit in female AppNL-G-F mice at early stages [27] could be detected by the DNMTP task in the Operant House.

Working-memory-related performance assessed with the TCSD task using the Operant House

To assess working memory-related performance by an independent method and to detect any changes in male AppNL-G-F mice, we established a TCSD test, in which mice were required to memorize the correct panel from two options by recalling the position from the previous trial (Fig 8, refer to Methods for detailed description). The correct position was switched to the opposite side after the mice achieved more than 7 correct responses in the most recent 8 trials. To identify the brain regions involved in the TCSD task, we performed prefrontal cortex lesions using ibotenic acid injections. In block1, VD1 and VD2 tasks, in which mice needed to touch a single lit panel, no significant differences were observed between groups (Mann-Whitney U test: VD1, p = 0.853; VD2, p = 0.826) (Fig 9A, B). In block 2, the TCSD test revealed lower correct rates in the lesion group over 3 days (Fig 9C; GLMM: χ2(1) = 12.40, OR = 0.62; p = 0.0004). The lesion group also exhibited a significant reduction in the number of reversals (Fig 9D; LMM: F1,5 = 16.15, p = 0.0101, Hedges’ g = −1.70), with an increased average trial number per reversal (Fig 9E; LMM: F1,5 = 23.36, p = 0.00475, Hedges’ g = 2.68) and the number of the incorrect trials (Fig 9F; LMM: F1,5 = 10.36, p = 0.0235, Hedges’ g = 2.18). These results suggest that prefrontal-lesioned animals exhibited impaired TCSD performance.

Fig 9. Prefrontal cortex-lesioned wild-type mice exhibit impaired performance in the TCSD task.

Fig 9

(A, B) The number of days required to reach the performance criterion in VD1 (A) and VD2 (B) did not differ between saline- and ibotenic acid-treated mice. (C) TCSD task performances. The lesioned animals showed lower correct rates than control animals. Blue-outlined plots indicate trials that met the 10 sec criterion for actual delay times. (D) Reversals. The number of reversals per day was reduced in the lesion group. (E) Trial efficiency. Ibotenic acid-treated mice required more trials per reversal on average than control mice. (F) Trial outcomes. The lesion group showed a higher number of incorrect and total trials. (G) Touch intervals. Ibotenic acid-treated mice showed an increased mean time between touches. The delay times of trials that met the 10 sec criterion for actual delay times were nearly identical between groups. (H) Ratio of selected to total trials. Mann–Whitney U test (A, B); GLMM (C); LMM (D–G). Holm adjustment was applied to post hoc comparisons where applicable. ***p < 0.001; **p < 0.01; *p < 0.05. n = 4 (saline) and n = 3 (ibotenic acid).

In the TCSD task, although the inter-trial interval was set to 5 sec, mice could spend any amount of time between trials. Indeed, the delay time from touching a panel in one trial to touching a panel in the next was significantly longer in the lesion group (Fig 9G; LMM: F1,5 = 7.95, p = 0.0371, Hedges’ g = 1.22). To assess the potential influence of this longer delay duration, we performed an additional sensitivity analysis restricted to trials with actual delay times of 10 sec or less. This criterion retained 445 of 1,514 trials (29.4%) in saline-treated mice and 210 of 1,398 trials (15.0%) in IBO-treated mice; consequently, 1,069 (70.6%) and 1,188 (85.0%) trials, respectively, were excluded. The delay times in these selected trials were comparable between the groups (Fig 9G, blue-outlined circles). Because a substantial proportion of trials was excluded, particularly in the IBO group, this delay-restricted analysis was interpreted as a sensitivity analysis and considered together with the primary analysis based on all trials. Nevertheless, the correct rate remained significantly lower in the lesioned animals for these trials (GLMM: χ2(1) = 7.20, OR = 0.61; p = 0.0073) (Fig 9C, blue-outlined circles). These findings support a contribution of the prefrontal cortex to TCSD performance.

The TCSD test detected impaired task performance in male AppNL-G-F mice

Next, male AppNL-G-F mice and their wild-type littermates at 5 months of age were subjected to the TCSD task. There was no significant difference between genotypes in the number of days required to reach the learning criterion in the VD1 or VD2 tasks (Mann-Whitney U test: VD1, p = 0.454; VD2, p = 0.0689) (Fig 10A, B). In block 2, the male AppNL-G-F mice showed robust impairment in the TCSD task across three days (Fig 10C; GLMM: χ2(1) = 12.71, OR = 0.76; p = 0.0004) and in each 50-trial bin (Fig 10D; GLMM: χ2(1) = 17.98, OR = 0.74; p < 0.0001). AppNL-G-F mice also completed fewer reversals (Fig 10E; LMM: F1,12 = 19.06, p = 0.0009, Hedges’ g = −2.33) and required more trials to meet the reversal criterion (Fig 10F; LMM: F1,12 = 14.44, p = 0.0025, Hedges’ g = 1.46), whereas the total numbers of trials were unaffected (Fig 10G; LMM: F1,12 = 1.35, p = 0.27, Hedges’ g = −0.87). These results indicate impaired TCSD performance, consistent with deficits in working-memory-related processes and/or behavioral flexibility and response selection.

Consistent with results from the DNMTP task, the AppNL-G-F mice exhibited significantly prolonged delay times during the TCSD test (Fig 10H; LMM, genotype effect: F1,12 = 8.35, p = 0.0136, Hedges’ g = 1.30). To assess the potential influence of this longer delay duration, we performed an additional sensitivity analysis restricted to trials with actual delay times of 20 s or less. This criterion retained 3,728 of 5,019 trials (74.3%) in wild-type mice and 2,696 of 4,531 trials (59.5%) in AppNL-G-F mice; consequently, 1,291 (25.7%) and 1,835 (40.5%) trials, respectively, were excluded. Thus, although more than half of the trials were retained in both genotypes, a larger proportion of trials was excluded in AppNL-G-F mice. The actual delay times of these selected trials were comparable between genotypes (Fig 10H, blue-outlined circles). Because trial retention differed between genotypes, this delay-restricted analysis was interpreted as a sensitivity analysis and considered together with the primary analysis based on all trials. Nevertheless, correct-response rates remained significantly lower in AppNL-G-F mice (Fig 10C, blue-outlined circles; GLMM: χ2(1) = 9.47, OR = 0.71, p = 0.0021).

Correct-response rates across successive 10-trial bins showed no obvious systematic decline over the course of each daily session in either genotype (Fig 10J). To formally test this, we compared performance during the first and last 20 trials of each session. No significant difference was detected in wild-type mice (GLMM: χ2(1) = 0.05, OR = 0.97, p = 0.8203) or AppNL-G-F mice (binomial GLM: χ2(1) = 1.70, OR = 0.83, p = 0.1920; Fig 10K), providing no evidence of a systematic decline in task performance over the course of the daily sessions. Together, these results demonstrate that the Operant House can detect early cognitive deficits in AppNL-G-F mice as early as 5 months of age using two complementary paradigms, DNMTP and TCSD.

Abnormal synaptic changes in the prefrontal cortex of 5-month-old AppNL-G-F mice

Finally, to determine whether 5-month-old AppNL-G-F mice already exhibit pathology in the prefrontal cortex, which is critically involved in working memory, we examined structural and functional synaptic changes in this region. Immunohistochemistry revealed abundant amyloid-β (Aβ) plaques in the prefrontal cortex of 5-month-old AppNL-G-F (S19A Fig). To assess synaptic alterations, we quantified the excitatory presynaptic marker vesicular glutamate transporter 1 (VGluT1) and the inhibitory presynaptic marker vesicular GABA transporter (VGAT) in the prefrontal cortex. In regions outside Aβ plaques, neither VGluT1 nor VGAT immunoreactivity differed significantly between genotypes, although VGAT showed a tendency toward lower intensity in AppNL-G-F mice (S19B, S19C Fig). Notably, within individual Aβ plaques, both VGluT1 and VGAT immunoreactivities were significantly lower than in the surrounding neuropil (S19D Fig). These findings indicate localized reductions in both excitatory and inhibitory presynaptic markers around Aβ plaques.

To test whether these changes in synaptic markers are accompanied by functional alterations, we next performed whole-cell patch-clamp recordings from pyramidal neurons in acute medial prefrontal cortex (mPFC) slices from 5-month-old AppNL-G-F and wild-type mice. Passive membrane properties of pyramidal neurons did not differ between genotypes (S20A Fig), and the mean frequency and amplitude of miniature excitatory and inhibitory postsynaptic currents (mEPSCs and mIPSCs) were also comparable (S20B Fig). Similarly, the mean amplitudes of excitatory and inhibitory currents (EPSCs and IPSCs) evoked by local stimulation near the recorded cells were not significantly different between groups (S20C Fig). However, cell-to-cell variability in the I/E ratio was significantly greater in AppNL-G-F than in wild-type pyramidal neurons after accounting for the non-independence of multiple cells recorded from the same mouse (heteroscedastic linear mixed-effects model on natural-log-transformed I/E ratios; likelihood-ratio test, χ2(1) = 23.31, p < 0.0001; S20C Fig). Because the spatial relationship of each recorded neuron to nearby Aβ plaques was not determined, this increased variability may reflect heterogeneity associated with local Aβ pathology, although this possibility remains speculative.

Interestingly, tetanic stimulation (100 pulses at 100 Hz) applied to Schaffer collaterals elicited long-term potentiation (LTP) of excitatory synapses between Schaffer collaterals and CA1 pyramidal neurons in acute dorsal hippocampal slices from both wild-type and AppNL-G-F mice. The magnitude of LTP did not differ significantly between genotypes after accounting for multiple slice recordings obtained from the same mouse (heteroscedastic linear mixed-effects model, F(1, 4) = 0.059, p = 0.821), and paired-pulse ratios after LTP induction were also comparable (F(1, 4) = 0.289, p = 0.620; S21 Fig). These results provide no evidence of a detectable impairment in Schaffer collateral–CA1 LTP in 5-month-old AppNL-G-F mice, suggesting that altered hippocampal LTP is unlikely to account for the working-memory deficits observed at this age. Together, these results support the notion that the working-memory deficits detected by the DNMTP task and altered performance in the TCSD tasks in the Operant House are associated with synaptic alterations already present in the prefrontal cortex of 5-month-old AppNL-G-F mice.

Discussion

In this study, we developed the Operant House, a custom-built, cost-effective, and programmable device designed for automated operant conditioning tests in individually housed mice within the home cages. Several low-cost, home-cage–mountable systems have been reported, including the ArduiPod Box [33] and Psibox [8]. These devices can be installed in standard home cages, but were developed for a more restricted set of operant paradigms than those considered here. Other systems, such as ROBucket [34] and DIY-NAMIC [35], support more complex operant paradigms, yet their input interfaces are fixed: the number of nose-poke ports is limited (≤3), lever-press and touchscreen-based tasks cannot be implemented, and they do not support aversive light stimulation for punishment or a dedicated behavioral camera for direct video monitoring. The ARTS system [7] is specialized for joystick-based tasks in rats that move along an inverted Y-shaped slot; therefore, its configuration differs substantially from conventional touchscreen- and lever-based operant paradigms.

In contrast, a key advantage of the Operant House is its compatibility with programmable, touchscreen-based task paradigms for higher cognitive testing that have been developed for non-human primate and rodent models over the past two decades [31]. By simply changing the program and the mask pattern of the LCD monitor, different touchscreen-based operant tasks can be implemented in the home cages while minimizing experimenter intervention. Conventional lever-press tasks can also be implemented by replacing the chamber wall. In a home-cage lever-press operant conditioning task, mice acquired the behavior rapidly within a single day (S13F Fig), and the time required to complete the first 30 lever presses was approximately eightfold shorter than that reported using a conventional non-home-cage operant apparatus [4] although differences in apparatus design and training procedures preclude a direct quantitative comparison. Furthermore, because the Operant House is equipped with an overhead camera, task performance and animal condition can be monitored directly and recorded for subsequent inspection; the recorded videos can also support downstream behavioral analyses (S2 Video) [30,36–38].

The Operant House uses open-source Python software that can run on either a laptop computer (version 1) or a low-cost single-board computer (version 2), such as a Raspberry Pi 4, and the source code, construction files, and documentation are freely available on the project website (https://shintaro18.github.io/). Importantly, behavioral validation should be distinguished from technical implementation: visual discrimination, lever pressing, DNMTP, and TCSD were evaluated in mice in the present study, and TUNL has been evaluated in a separate study [39], whereas the other available paradigms remain to be systematically validated in animals.

As proof of concept, we evaluated working-memory-related cognitive performance in mice using two tests in the Operant House: the DNMTP and TCSD tests. Spatial working memory in rodents is commonly assessed with the T-maze alternation test [40]. In this test, mice must choose between a previously visited arm and a goal arm, the latter offering a food reward. A simplified version of this task measures spontaneous alternations in open arms without blocking entries [41]. However, T-maze alternation tests may be confounded by spatial novelty preference, a passive form of short-term memory [42]. For example, T-maze rewarded alternation performance was unaffected by the loss of NMDA receptors in the prefrontal cortex, an area critical for working memory, whereas DMTP tasks with five visual cues and nose-poking revealed significant impairments [43]. Similarly, the DNMTP test in the Operant House, which utilizes three positions for visual cues and nose pokes, led to increased c-Fos expression in the prefrontal cortex following task completion. Furthermore, prefrontal cortex lesions impaired performance in both DNMTP and TCSD tasks (Fig 6O, 9C-H). Because the lesion experiments involved relatively small groups (n = 3–4 per group), these findings should be regarded as supportive evidence for prefrontal involvement and interpreted cautiously with respect to the magnitude of the lesion effects. Nevertheless, together with the c-Fos results, these findings support the involvement of the prefrontal cortex in performance of both tasks in the Operant House. The DNMTP task directly assesses working memory, whereas performance in the TCSD task likely reflects multiple cognitive processes, including working memory, behavioral flexibility, and response selection.

The behavioral performance obtained in the DNMTP and TCSD tasks using the Operant House was generally comparable to that previously reported using conventional non-home-cage operant conditioning chambers. For example, Kwak et al. used a similar DNMTP paradigm in a commercial operant conditioning apparatus (Campden Instruments Ltd, UK) and reported correct rates of approximately 85% and 67% at 3- and 9-s delays, respectively, in 10-week-old male C57BL/6J mice [3]. In comparison, 5-month-old female wild-type C57BL/6J mice tested in the Operant House achieved correct-response rates of approximately 70% at 3- and 12-s delays (Fig 7F). Although these values are broadly within a similar performance range, the two studies differed not only in delay duration and training procedures but also in the age and sex of the mice, precluding direct quantitative comparison of task performance.

Similarly, in the TCSD task, Clelland et al. performed an analogous paradigm in a conventional operant apparatus in which the distance between the two choice panels was either large or small, with the large-separation condition corresponding to that used in the present study [32]. Under this large-separation condition, 8-week-old female C57BL/6 mice required an average of 16 trials per reversal, whereas mice tested in the Operant House required only 14.8 trials on average (Fig 9E; averaged across three sessions). Importantly, Clelland et al. reported that habituation, shaping, and pre-training required approximately 26 days before TCSD testing [32], whereas the Operant House protocol required only 3 days for these preparatory procedures. These findings indicate similar reversal performance, together with a substantially shorter preparatory period in the Operant House protocol.

Two additional studies provide further points of comparison. In the lever-press paradigm, mice tested in the Operant House completed their first 30 lever presses approximately eightfold faster than mice tested using a conventional non-home-cage apparatus [4], although differences in apparatus design and training conditions should be considered. In addition, a conventional touchscreen-based location discrimination test detected working-memory impairments in 4- to 6-month-old male AppNL-G-F mice [30], consistent with the abnormalities detected in 5-month-old male AppNL-G-F mice using the TCSD task in the Operant House. This latter comparison is qualitative because the two studies used related but non-identical task designs.

Taken together, these comparisons with four previous studies indicate that the Operant House can produce behavioral performance broadly comparable to that obtained using conventional non-home-cage apparatuses, while shortening task acquisition or preparatory training in some paradigms. Because these were not head-to-head comparisons and the studies differed in task parameters, training criteria, age, sex, and genetic background, these findings suggest potential gains in experimental efficiency in some paradigms but should not be interpreted as evidence of general superiority of the Operant House over conventional systems.

A limitation of the present study is that behavioral testing in the Operant House was conducted under single-housing conditions. While this design enables automated and individually assigned training without interference from cage mates, prolonged single housing may influence animal welfare, stress, and behavior, and should therefore be taken into account when interpreting the results. Animal condition can be monitored through live and recorded video, but such monitoring should supplement rather than replace routine welfare assessments. Regular body-weight measurements and visual assessments of general appearance, grooming, posture, spontaneous activity, food and water intake, and signs of injury or distress are therefore important during prolonged individual housing. Because operant performance was reinforced by access to water, differences in motivational state related to thirst cannot be completely excluded. However, in six wild-type mice tested under the same programmed DNMTP water-access regimen, no significant group-level change in body weight was observed. Because actual water consumption was not directly measured and these body-weight data were obtained from independent experiments, individual or genotype-dependent differences in hydration or motivation remain possible. Future refinements of the protocol should nevertheless aim to minimize the duration of single housing and, where feasible, maintain sensory contact between animals while preserving the advantages of individualized home-cage testing.

A further limitation concerns the analyses restricted according to actual delay duration. Because actual delay duration was influenced by the animals’ behavior, selection based on this measure could retain different subsets of trials across experimental groups, particularly in the TCSD experiments. We therefore treated the delay-restricted analyses as sensitivity analyses rather than independent confirmatory tests; the primary conclusions are based on analyses including all trials.

In the present study, operant task sessions were conducted once a day, following conventional non-homecage operant conditioning paradigms. Future studies could examine whether optimizing session timing, trial number, or reward schedules during the animals’ active phase can shorten training while maintaining appropriate animal welfare.

The AppNL-G-F mouse, which is thought to more faithfully recapitulate human AD pathology because it lacks artifacts caused by protein overexpression, exhibits relatively mild neurological phenotypes, particularly at early stages. For example, most studies have reported normal performance in the Morris water maze [26,30,44] and context fear conditioning [27,28] at six months of age. In AD, however, working memory impairment is one of the earliest symptoms during the preclinical stage [37,38,45]. Studies using the Y-maze in six-month-old AppNL-G-F mice have yielded mixed results: some report impairments [26,27], whereas others do not [29]. Interestingly, studies showing no impairments [29] used male mice, while another study found deficits only in females [27]. Although the reasons remain unclear, AD is more common in women than in men, and the estimated lifetime risk has been reported to be approximately twice as high in women [46]. This epidemiological difference does not directly explain the sex-dependent phenotypes observed in the mouse model but provides a relevant context for further investigation. Furthermore, differences in the sex of the experimenter have been suggested as a factor influencing Y-maze performance [29]. Thus, the abnormalities detected exclusively in female AppNL-G-F mice by the DNMTP test in the Operant House, which is conducted without direct experimenter intervention, are particularly noteworthy. Working memory impairments have also been reported in male AppNL-G-F mice at 4–6 months of age using a non–home-cage–based location discrimination (LD) test, in which male animals (C57BL/6J) choose between two visual stimuli presented on the left and right sides of a touchscreen [30]. Consistent with this, the TCSD test in the Operant House, which requires mice to choose between two sides based on five visual stimuli, revealed abnormalities in male AppNL-G-F mice at 5 months of age. These findings suggest that the DNMTP and TCSD tasks may probe distinct aspects of working memory or partially dissociable cognitive domains, such as cognitive inflexibility. The DNMTP task places particular demands on retaining and updating information across a delay, whereas the TCSD task requires spatial discrimination among multiple visual stimuli and may place different demands on response selection and cognitive flexibility. The sex-dependent phenotypes may therefore reflect differences in the temporal or circuit-level progression of AD-related dysfunction between female and male AppNL-G-F mice, differences in the demands and sensitivity of the behavioral tasks, or a combination of these factors. Because neuropathological progression and circuit dysfunction were not directly compared between sexes in the present study, these possibilities remain speculative and require further experimental investigation.

Taken together, our results indicate that the Operant House enables automated detection of early cognitive deficits in AppNL-G-F mice within their individual home cages, including working-memory impairment detected by the DNMTP task. The Operant House may therefore provide an accessible and scalable platform for investigating subtle cognitive phenotypes in preclinical models of AD and other neurological and neuropsychiatric disorders.

Supporting information

S1 Fig. Main parts list.

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pone.0360626.s001.pdf (168.7KB, pdf)
S2 Fig. Tool list for fabrication.

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pone.0360626.s002.pdf (89.4KB, pdf)
S3 Fig. Exploded-view diagram of Operant House Version 2 (top) and summary of the differences between Versions 1 and 2 (bottom).

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pone.0360626.s003.pdf (399.1KB, pdf)
S4 Fig. Assembly instructions for the 3D-printed parts.

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pone.0360626.s004.pdf (427KB, pdf)
S5 Fig. A schematic illustration of the circuitry of the switching board that controls the LEDs and a servo.

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pone.0360626.s005.pdf (542.3KB, pdf)
S6 Fig. Assembly instructions for LED wiring.

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pone.0360626.s006.pdf (538KB, pdf)
S7 Fig. Assembly instruction for wiring the IR and green LEDs.

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pone.0360626.s007.pdf (596.5KB, pdf)
S8 Fig. Assembly instruction for servo, Arduino and ventilation fan wiring.

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pone.0360626.s008.pdf (467KB, pdf)
S9 Fig. Mounting instructions for the Raspberry Pi, Arduino, and switching board.

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pone.0360626.s009.pdf (567.8KB, pdf)
S10 Fig. Assembly instructions for the camera, ventilation fan, and LEDs.

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pone.0360626.s010.pdf (538.4KB, pdf)
S11 Fig. Wiring of each component and external appearance of the completed device.

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pone.0360626.s011.pdf (485.3KB, pdf)
S12 Fig. Setup instruction for the Raspberry Pi 4B.

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pone.0360626.s012.pdf (623.7KB, pdf)
S13 Fig. Retractable lever modules.

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pone.0360626.s013.pdf (392.2KB, pdf)
S14 Fig. Additional results from the DNMTP test in wild-type mice.

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pone.0360626.s014.pdf (1.1MB, pdf)
S15 Fig. Additional results from the DNMTP task in wild-type mice with prefrontal cortex lesions induced by ibotenic acid.

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pone.0360626.s015.pdf (1.1MB, pdf)
S16 Fig. Results of the DNMTP test using Operant House Version 2.

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pone.0360626.s016.pdf (606.8KB, pdf)
S17 Fig. Additional results of the DNMTP test in female AppNL−G−F mice.

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pone.0360626.s017.pdf (995.3KB, pdf)
S18 Fig. Male AppNL−G−F mice exhibited normal working memory in the DNMTP test at 5 months of age.

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pone.0360626.s018.pdf (928.6KB, pdf)
S19 Fig. Reduced presynaptic marker immunoreactivity within Aβ plaques in the mPFC of AppNL-G-F mice at 5 months of age.

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pone.0360626.s019.pdf (648.3KB, pdf)
S20 Fig. Increased variability in excitatory–inhibitory balance in AppNL-G-F mice at 5 months of age.

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pone.0360626.s020.pdf (1.4MB, pdf)
S21 Fig. No detectable alteration in hippocampal long-term potentiation (LTP) in 5-month-old AppNL-G-F mice.

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pone.0360626.s021.pdf (763.1KB, pdf)
S1 Video. Automated detection of nose pokes during the VD2 session using Operant House Version 2.

(AVI)

Download video file (55.8MB, avi)
S2 Video. Analysis of behavioral patterns using the built-in camera of the Operant House and DeepLabCut.

(AVI)

Download video file (12.2MB, avi)

Acknowledgments

We extend our gratitude to Drs. Takashi Saito, Takaomi C. Saido, and Yoichiro Abe for generously providing us with AppNL-G-F mice.

Data Availability

All relevant data for this study are publicly available from the Zenodo (doi.org/10.5281/zenodo.22019760) and GitHub (https://shintaro18.github.io) repositories.

Funding Statement

This study was supported by the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan, in the form of a KAKENHI grant awarded to M.Y. (20H05628) and a KAKENHI grant awarded to A.I.-I. (22H05158); the Japan Society for the Promotion of Science (JSPS), Japan, in the form of KAKENHI grants awarded to M.Y. (22K21353 and 25H01011); and the Japan Agency for Medical Research and Development (AMED), Japan, in the form of a grant awarded to M.Y. (JP24zf0127010). MEXT: https://www.mext.go.jp/en/ JSPS KAKENHI: https://www.jsps.go.jp/english/e-grants/ AMED Moonshot Research and Development Program: https://www.amed.go.jp/en/program/list/18/03/001.html The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Mario Treviño Villegas

18 Jan 2026

Dear Dr. Yuzaki,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

Reviewer #1: Yes

Reviewer #2: Partly

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2. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #2: No

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3. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: No

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4. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: This is an excellent manuscript describing “Operant House,” a flexible and low-cost platform for automated operant conditioning in individually housed mice.

I appreciate the versatility, the clear documentation, and the fact that several different cognitive tasks can be conducted without handling or transferring animals.

This approach is likely to reduce stress, increase throughput, and broaden accessibility for labs without specialized behavioral facilities.

The manuscript is written clearly, with extensive methodological detail suitable for replication. Parts lists and the tailored website will help to reproduce the system.

Statistical analyses are appropriate, the validation experiments are convincing, and the proof-of-concept AD model data (now in the supplementary information) is presented in a balanced way. It is also evident that the manuscript has significantly benefited from previous review rounds.

I did not identify any major flaws or substantive weaknesses. A few very minor typographical or formatting inconsistencies remain, but these do not detract from the science. Overall, this work represents a valuable contribution to the field of automated behavioral testing and will be of interest to groups studying cognition, neuropsychiatric disease models, and high-throughput behavioral pipelines.

In my opinion, the manuscript is suitable for publication in its current form, and I encourage acceptance.

Minor inconsistencies:

Typo in the abstract: “within in their home cages - ”duplicated “in”.

Acronym: PL/IL vs PI/IL not consistent

Reviewer #2: Dear Authors,

The manuscript describes a new behavioral setup which combines housing and an operant learning chamber using LCD screens (giving CS), nose poke through a wall with openings (CR),water delivery (US, reward) and LED lights (US, punishment). The authors shows that different behavior protocols can be performed in this setup. I think the work is interesting and this could be a ground work for interesting future development, but the manuscript needs some additional work to optimize the dissemination of the tool and ideas.

I wrote my comments before seeing that it had already be reviewed (I modified it slightly afterwards). I got to similar conclusions that earlier reviewers: both the setup description and the AD-related experiments (so good to see acceptable control group in a AD experiment !) are interesting but should be in two different papers. This will also make the review much easier, and more importantly for the authors and the community: it would make the AD experiments much more visible.

I disagree with the comment to put the setup description in the material and methods, but agree with most other comments. I would also not ask for additional experiments, but in absence of a direct comparison of this setup against a previously published one, with experiments done in parallel, the discussion should be a bit more convincing.

An additional comment compared to earlier review that is essential: the ethical aspects of the setup are critical. In the setup, animal are housed in isolation, with food in the bedding for weeks, this will not be possible in Europe and the authors need to discuss both the stressful effect on their experiments, and ways to change the protocol.

NB : Directive 2010/63/EU (Council of the Europe Union 2010): “Animals, except those which are naturally solitary, shall be socially housed in stable groups of compatible individuals. In cases where single housing is allowed in accordance with article 33(3) the duration shall be limited to the minimum period necessary and visual, auditory, olfactory and/or tactile contact shall be maintained.” This can be kept in the discussion for now, but protocol adjustment to minimise single housing should be a objective for future work.

The authors needs to convince me a bit more that the “Operant House not only reproduces behavioral performance obtained in conventional non–home-cage apparatuses but also enhances experimental efficiency by shortening the overall duration of behavioral paradigms.“. I would like a bit more focus on that aspect (while minimizing single housing). This would be needed to really convince people to use the setup. They only discuss two other papers doing similar experiments without mentioning mice genetic background or age. This would need a more systematic description and comparison.

The second part of the paper about the AppNL-G-F mice should be moved to another paper, I think. I encourage the authors to make two companion paper : one about the new protocol and setup, one about the AD related experiment. I was pleased to see AD experiments where the control group makes sense, thank you for that. I did not review the non-behavioral part of the manuscript as it is out of my expertise and I believe it deserves its own paper.

Major point : Open source and open data aspects

Please indicate license of the software and hardware if you want to call it "open source".

Instruction and data should be provided in a long term archived version, websites tend to disappear. Please use a data repository to host the information for the long term (zenodo for example). I would also encourage the author to move the description into a community friendly tool with version control, like Codeberg or Gitlab, or a similar tool, so people can give feedback there. (This should be very easy as the current documentation on the website looks like a markdown based wiki)

As helper for open hardware (please only use if you think it can help you, not because I mention it), you may have a look at the OSHWA certification program for open hardware (https://certification.oshwa.org/) and the hardware documentation guide I put together (https://open-make.github.io/Hardware-template-guide/).

You mentioned data is available, but it is not. Please give access to all csv files and the analysis code (you can use zenodo for that too).

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Minor points :

The first part of the papers sounds too much like an advertisement, as if Fig.1 A. In particular, you should mention the disadvantage of an home cage setup early on and discuss it (abstract and introduction) : single housing, no involvement of the human who could detect stress,...

The electrophysiology and immunstaining experiments are not mentioned in the abstract, title or introduction. Authors should either rewrite those or take out these experiments out of the paper and keep it for another paper more related to the biology experiments (see main comment).

Please put the material and method section before the result section. Indicate the condition of housing first, indicate when light was turned on/off and indicate the number of animal per cage, and size of the cage before the experiment started.

Explain better what light conditions and water restriction were used during the operant house. Make a better figure of the habituation time that includes access to water and link it in the text, I could not follow: do the mice have no water during the first 12h ?

Please explain protocolse without referring to other protocols. You may tell differences after the initial description but this is more for the result/discussion section than the material and method. (I do not understand "the stimulus water supply was not provided." )

Add a table for version 1 and version 2 differences in protocols.

"To prevent the mice from acclimating to a specific pattern of changes, two delay schedules, A and B, were randomly assigned to each trial." Please explain what schedules is it, and what do you mean with "randomly assigned": each mouse got a different series, did you use a randomisation table, was randomisation computer generated ?

Please indicate the number of animals and number of cohorts for the experiments.

Results

Explain why did you choose midnight as the start of the operant time, this is not when the animals are most active ?

Give a better image of the masking wall and refer to the image in the text, also indicate the material used for the wall.

"accuracy 100% (comparison between automated detection and human counting during the first 30 min of the VD2

session)" please gives us data, was it counted by 2 humans ? If not, please rephrase.

"Implemented operant tasks" this list is longer than what is presented in the paper. Maybe add these other tasks in this paper if you split the manuscript.

"Water intake: 25-35 µl per lick." how was this calculated ?

longer actual delay time: it is not clear why this was specified in the AD experiments and not before. This should be part of the description of the behavior and not come at an extra element with the experiment with transgenic animals. “we selected trials whose actual delay time was within 1.3 times the specified delay time plus 10 seconds“: this is part of the material and method section, explain why that selection, and when did you make it.

“Although not statistically significant (genotype: F1,10 = 1.117, p = 0.315), AppNL-G-F mice tended to have longer actual delay times compared to wild-type mice (Fig 7G)”: if this is not significant, there is no reason to mention it.

Discussion:

Please discuss the results, not putative expansion of the system you do not have or show data of (even when this is asked by other reviewers :) ).

“quantitative analysis of posture dynamics“: either show you can do it, or do not mention it. I would guess that a camera on top is not sufficient to do that.

“Additionally, the software includes a TTL signal output and timestamp functionality, enabling seamless integration with external devices for experiments involving optogenetics. “ : please indicate time precision in ms if you want to discuss this.

Please compare habituation time in hours too (in your setup 1 day is 24 hours, what is in Clelland et al ?)

Statistics:

Please give more information on statistics:

The representation and analysis of the data suppose the data is normally distributed, while it probably is not, at least it cannot be for 9A and 9B (as you may have mice never reaching the criteria). Please use boxplots or jitter points, and other tests (unless you can prove the data is normally distributed). Indicate how scores are calculated and give sample sizes (number of mice, number of trials): it should be one score per mice (not one score per trial), but this is not explained.

You also often test the data multiple times without mentioning having a bonferroni correction. Be a bit more straight on your tests: for each experiment have one statistical test that matters first, and for any other test, you may not mention any statistics. Selecting part of the data for the analysis a posteriori is a p-hacking strategy.

**********

what does this mean?). If published, this will include your full peer review and any attached files.

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Do you want your identity to be public for this peer review?  For information about this choice, including consent withdrawal, please see our Privacy Policy

Reviewer #1: No

Reviewer #2: Yes:  Colomb, Julien

**********

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PLoS One. 2026 Oct 13;21(10):e0360626. doi: 10.1371/journal.pone.0360626.r003

Author response to Decision Letter 1


11 Jun 2026

Point-by-point responses to Reviewers’ comments

We thank the reviewers for their time and constructive feedback. We are encouraged by their positive assessment of our manuscript and by the indication that it will be suitable for publication once the remaining issues are addressed. Below, we provide detailed, point-by-point responses to each comment. Newly added text in the revised manuscript is shown in blue in the marked-up copy.

Reviewer #1:

“This is an excellent manuscript describing “Operant House,” a flexible and low-cost platform for automated operant conditioning in individually housed mice.

I appreciate the versatility, the clear documentation, and the fact that several different cognitive tasks can be conducted without handling or transferring animals.

This approach is likely to reduce stress, increase throughput, and broaden accessibility for labs without specialized behavioral facilities.

The manuscript is written clearly, with extensive methodological detail suitable for replication. Parts lists and the tailored website will help to reproduce the system.

Statistical analyses are appropriate, the validation experiments are convincing, and the proof-of-concept AD model data (now in the supplementary information) is presented in a balanced way. It is also evident that the manuscript has significantly benefited from previous review rounds.

I did not identify any major flaws or substantive weaknesses. A few very minor typographical or formatting inconsistencies remain, but these do not detract from the science. Overall, this work represents a valuable contribution to the field of automated behavioral testing and will be of interest to groups studying cognition, neuropsychiatric disease models, and high-throughput behavioral pipelines.

In my opinion, the manuscript is suitable for publication in its current form, and I encourage acceptance.”

We greatly appreciate these positive and encouraging comments.

Minor inconsistencies:

“Typo in the abstract: “within in their home cages-duplicated `in’.”

“Acronym: PL/IL vs PI/IL not consistent.”

We have corrected these typographical and formatting inconsistencies in the revised manuscript.

Reviewer #2:

“The manuscript describes a new behavioral setup which combines housing and an operant learning chamber using LCD screens (giving CS), nose poke through a wall with openings (CR), water delivery (US, reward) and LED lights (US, punishment). The authors shows that different behavior protocols can be performed in this setup. I think the work is interesting and this could be a ground work for interesting future development, but the manuscript needs some additional work to optimize the dissemination of the tool and ideas.”

“I wrote my comments before seeing that it had already be reviewed (I modified it slightly afterwards). I got to similar conclusions that earlier reviewers: both the setup description and the AD-related experiments (so good to see acceptable control group in a AD experiment!) are interesting but should be in two different papers. This will also make the review much easier, and more importantly for the authors and the community: it would make the AD experiments much more visible.”

“I disagree with the comment to put the setup description in the material and methods, but agree with most other comments...”

We thank Reviewer #2 for the positive assessment of our study and for appreciating not only the Operant House system itself but also the analyses using the Alzheimer’s disease model. We agree that the Alzheimer’s disease-related results are of interest in their own right. However, we would respectfully prefer to retain these data in the present manuscript, because we believe that inclusion of the behavioral analyses in the Alzheimer’s disease model is important for demonstrating the utility of the Operant House in a biologically and medically relevant context.

In the previous round of revision, one reviewer also commented that the manuscript was somewhat difficult to follow because it combined the development and design of the Operant House with the analyses of the Alzheimer’s disease model. In response to that concern, in the revised manuscript we moved sections not directly related to the development and design of the Operant House, such as the electrophysiological and immunohistochemical analyses in the Alzheimer’s disease model, to the Supplemental Information. At the same time, we substantially expanded the descriptions related to the development and design of the Operant House in the main text, figures, and supplementary materials. We hope that these revisions have made the main focus of the manuscript clearer and improved its overall readability.

We believe that retaining the behavioral analyses of the Alzheimer’s disease model strengthens the manuscript by providing a concrete demonstration of the usefulness of the Operant House. For this reason, we feel that presenting both the methodological advance and its application within a single manuscript provides a stronger and more informative account of the work.

Because Reviewer #1 did not raise the concern that the manuscript should be divided into two separate papers, we would respectfully leave the final decision on this point to the Editor.

“…I would also not ask for additional experiments, but in absence of a direct comparison of this setup against a previously published one, with experiments done in parallel, the discussion should be a bit more convincing.”

We thank the reviewer for this helpful suggestion. In response, we have added a new section to the revised main text addressing differences in performance between the Operant House and conventional operant chambers. Specifically, for the lever-press task, we have added a description of how the results shown in Fig S13 compare with those reported in previous studies, in order to better clarify the characteristics and performance of the present system.

“An additional comment compared to earlier review that is essential: the ethical aspects of the setup are critical. In the setup, animal are housed in isolation, with food in the bedding for weeks, this will not be possible in Europe and the authors need to discuss both the stressful effect on their experiments, and ways to change the protocol.

NB : Directive 2010/63/EU (Council of the Europe Union 2010): “Animals, except those which are naturally solitary, shall be socially housed in stable groups of compatible individuals. In cases where single housing is allowed in accordance with article 33(3) the duration shall be limited to the minimum period necessary and visual, auditory, olfactory and/or tactile contact shall be maintained.” This can be kept in the discussion for now, but protocol adjustment to minimise single housing should be a objective for future work.”

We thank the reviewer for raising this essential point. We agree that single housing is an important welfare issue and should be scientifically justified, limited to the minimum duration necessary, and refined where possible. In the present study, mice were singly housed to allow individual behavioral testing without interference from cage mates. We acknowledge that prolonged single housing may affect stress and behavior, and we have added this as a limitation and welfare consideration in the revised Discussion. We also state that minimizing the duration of single housing and preserving sensory contact where feasible should be important goals for future refinement of the Operant House protocol.

“The authors need to convince me a bit more that the “Operant House not only reproduces behavioral performance obtained in conventional non–home-cage apparatuses but also enhances experimental efficiency by shortening the overall duration of behavioral paradigms.” I would like a bit more focus on that aspect (while minimizing single housing). This would be needed to really convince people to use the setup. They only discuss two other papers doing similar experiments without mentioning mice genetic background or age. This would need a more systematic description and comparison.

Following Reviewer #2’s suggestion, we have expanded the revised manuscript to include a more systematic comparison with four previous studies using conventional non-home-cage operant conditioning apparatuses. Where available, we now include information such as sex, age, and genetic background in order to make the comparison with the present study clearer and more informative.

“The second part of the paper about the AppNL-G-F mice should be moved to another paper, I think. I encourage the authors to make two companion papers: one about the new protocol and setup, one about the AD related experiment. I was pleased to see AD experiments where the control group makes sense, thank you for that. I did not review the non-behavioral part of the manuscript as it is out of my expertise, and I believe it deserves its own paper.”

As discussed above, although we greatly appreciate Reviewer #2’s positive assessment of both the Operant House system itself and the analyses using the Alzheimer’s disease model, we would respectfully prefer to retain these data in the present manuscript.

“Major point: Open source and open data aspects

Please indicate license of the software and hardware if you want to call it "open source."

We thank the reviewer for this important comment. The Operant House will be released under the MIT License, and we have now clearly indicated this in the main source code repository and on the Operant House website.

“Instruction and data should be provided in a long-term archived version; websites tend to disappear. Please use a data repository to host the information for the long term (zenodo for example). I would also encourage the author to move the description into a community friendly tool with version control, like Codeberg or Gitlab, or a similar tool, so people can give feedback there. (This should be very easy as the current documentation on the website looks like a markdown-based wiki).”

We thank the reviewer for this helpful advice. Because we have been using GitHub for development and version control, we have now moved the Operant House documentation site from a private server to GitHub Pages, which we believe provides a more stable, transparent, and community-friendly platform for long-term access and user feedback.

“As helper for open hardware (please only use if you think it can help you, not because I mention it), you may have a look at the OSHWA certification program for open hardware (https://certification.oshwa.org/) and the hardware documentation guide I put together (https://open-make.github.io/Hardware-template-guide/).”

We thank the reviewer for introducing us to OSHWA and for sharing these helpful resources. We believe that the philosophy of the OSHWA certification program, particularly its support for researcher-led open-hardware development in academia, closely aligns with the goals of the Operant House project. Accordingly, we have submitted the Operant House project for OSHWA certification.

“You mentioned data is available, but it is not. Please give access to all csv files and the analysis code (you can use zenodo for that too).”

In response, we have now made the relevant CSV files, analysis code, and associated videos publicly available in a GitHub repository, and we have added the corresponding link to the revised manuscript. The repository URL is as follows:

https://github.com/Shintaro18/DataForOperantHousePaper_PlosOne

Minor points:

“The first part of the papers sounds too much like an advertisement, as if Fig.1 A. In particular, you should mention the disadvantage of a home cage setup early on and discuss it (abstract and introduction): single housing, no involvement of the human who could detect stress,...”

We thank Reviewer #2 for this important comment. We understand the concern that the early part of the manuscript may have overemphasized the advantages of the Operant House without sufficiently acknowledging the limitations and practical considerations associated with home-cage behavioral testing. In response, we have revised the Abstract, Introduction, and Discussion to provide a more balanced description of the system.

Specifically, we now state earlier in the manuscript that, although home-cage operant testing offers advantages such as reduced handling and improved experimental efficiency, it also requires careful consideration of animal welfare, particularly with respect to individual housing and the potential effects of social isolation. We have also clarified that the Operant House enables live monitoring of the entire chamber and retrospective inspection of recorded task videos, which facilitate assessment of the animals’ health status and possible signs of stress during experiments. In addition, we have expanded the Discussion to more explicitly address these limitations and the importance of further refinement to minimize the burden associated with single housing.

“The electrophysiology and immunostaining experiments are not mentioned in the abstract, title or introduction. Authors should either rewrite those or take out these experiments out of the paper and keep it for another paper more related to the biology experiments (see main comment).”

In response, we have added a description of the electrophysiological and immunohistochemical analyses to the Abstract.

“Please put the material and method section before the result section.”

Following the reviewer’s suggestion, we have moved the Materials and Methods section to precede the Results section.

“Indicate the condition of housing first, indicate when light was turned on/off and indicate the number of animals per cage, and size of the cage before the experiment started.”

The light on/off schedule is described in the final part of the section entitled “Automated Operant Conditioning Using the Operant House.” We have added the other requested information to the Materials and Methods section of the revised manuscript, including the housing conditions prior to the experiment, the number of animals per cage, and cage size.

“Explain better what light conditions and water restriction were used during the operant house. Make a better figure of the habituation time that includes access to water and link it in the text, I could not follow: do the mice have no water during the first 12h?

Please explain protocols without referring to other protocols. You may tell differences after the initial description, but this is more for the result/discussion section than the material and method.”

In response, we have added a clearer description of the habituation procedure, light conditions, and water restriction schedule to the Materials and Methods section of the revised manuscript. We have also added the water restriction schedule to Figs. 5A and 8A.

“I do not understand ‘the stimulus water supply was not provided’”.

We thank the reviewer for pointing this out. “Stimulus water supply” referred to the “stimulus reward” shown in Figs. 5B and 8B. Because this terminology was inconsistent in the original manuscript, we have now unified it throughout the revised manuscript as “stimulus reward.”

“Add a table for version 1 and version 2 differences in protocols.”

In response, we have included in Fig. S3 of the revised manuscript a table summarizing the differences in the protocols between Operant House Version 1 and Version 2.

"To prevent the mice from acclimating to a specific pattern of changes, two delay schedules, A and B, were randomly assigned to each trial." Please explain what schedules is it, and what do you mean with "randomly assigned": each mouse got a different series, did you use a randomisation table, was randomisation computer generated?”

We thank the reviewer for pointing out that this description was unclear. In the working memory task, two different delay durations were used within a given session; for example, on day 4 of the working memory phase, the delay was either 5 s or 8 s on each trial. The sequence of these delays was determined by a computer-generated randomization table based on a specified seed value. To clarify this procedure, we have added a concrete example of the delay pattern used on day 4 of the working memory phase to the right side of Fig. 5F.

Because the Operant House allows the seed value to be specified, the same delay sequence can be reproduced exactly when the same seed is used. In the present experiments, all mice were tested using the same seed value on each day and therefore experienced identical delay patterns. The seed values used were as follows: day 1, 1; day 2, 2; day 3, 3; day 4, 4; day 5, 5; day 6, 6; day 7, 7; and day 8, 8. We have also added an explanation of this point to the Materials and Methods section of the revised manuscript.

“Please indicate the number of animals and number of cohorts for the experiments.”

The number of animals is indicated in the figure legends, and we have also clarified in the revised manuscript that all experiments were conducted in a single cohort.

“Results. Explain why did you choose midnight as the start of the operant time, this is not when the animals are most active?”

Because mice are nocturnal and show high levels of activity during the dark phase, we initiated the task at midnight, which corresponds to 3 h after the onset of the dark phase, in order to ensure that all animals were reliably awake when the session began.

“Give a better image of the masking wall and refer to the image in the text, also indicate the material used for the wall.”

In response, we have added to Fig. S11 both an overall photograph of the masking wall and a magnified image showing its surface texture more clearly. We have also added a description of the masking wall, including the material used, in the main text.

"accuracy 100% (comparison between automated detection and human counting during the first 30 min of the VD2 session)" please give us data, was it counted by 2 humans? If not, please rephrase.”

We thank the reviewer for this helpful comment. We apologize that this description was unclear. The comparison was based on manual counting by a single observer, not by two independent observers. In this analysis, the number of nose pokes detected automatically matched the number counted manually during the first 30 min of the VD2 session. To avoid overstating this validation, we have revised the wording in the manuscript accordingly. The corresponding video data have also been added to the Supporting Information as S22 Video.

"Implemented operant tasks" this list is longer than what is presented in the paper. Maybe add these other tasks in this paper if you split the manuscript.”

As discussed above, we would prefer to retain the Alzheimer’s disease model data in the present manuscript. While space limitations do not allow us to present experimental data for all operant tasks that have already been implemented, we believe that listing these successfully implemented tasks is nevertheless useful for illustrating the versatility of the Operant House.

"’Water intake: 25-35 µl per lick.’ how was this calculated?”

The estimated water intake per lick was calculated by dividing the decrease in water-bottle weight measured before and after the task session by the total number of licks recorded during the session. Because the bottle tip contains two metal balls that keep the outlet closed except during licking, we consider the contribution of evaporation to be negligible.

“longer actual delay time: it is not clear why this was specified in the AD experiments and not before. This should be part of the description of the behavior and not come at an extra element with the experiment with transgenic animals. “we selected trials whose actual delay time was within 1.3 times the specified delay time plus 10 seconds”: this is part of the material and method section, explain why that selection, and when did you make it.”

We thank the reviewer for this important comment. As pointed out, control of the actual delay duration was also necessary in the DNMTP experiment using ibotenic acid-treated mice, as in the other DNMTP experiments. In response, we have added a new panel showing the actual delay duration (Fig. 6P), and we have added the performance calculated using only trials that met the actual-delay criterion to Fig. 6O (blue outlines).

During this reanalysis, we also found an error in data processing. Although the Materials and Methods section stated that performance was analyzed using trials assigned to delay A, the previous graph had inadvertently been generated using the average of delay A and delay B. We have now corrected this and replaced the graph with the values obtained from delay A only (Fig. 6O, black outlines).

Following the reviewer’s suggestion, we have also added an explanation of the trial-selection procedure based on actual delay duration to the end of the DNMTP section in the Materials and Methods. The criterion of programmed delay × 1.3 + 10 s was adopted empirically because trials exceeding this threshold often reflected poor task engagement by the animals. This criterion was defined after we noticed, during the AppNL-G-F mouse experiments, that the actual delay duration was longer in the mutant group than in the control group; however, we did not compare multiple alternative thresholds.

“Although not statistically significant (genotype: F1,10 = 1.117, p = 0.315), AppNL-G-F mice tended to have longer actual delay times compared to wild-type mice (Fig 7G)”: if this is not significant, there is no reason to mention it.”

Although the mean actual delay duration in the AppNL-G-F group was nearly threefold longer than that in the wild-type group, the difference was not statistically significant. In accordance with the reviewer’s suggestion, we have removed this statement from the revised manuscript.

“Discussion:

Please discuss the results, not putative expansion of the system you do not have or show data of (even when this is asked by other reviewers :) ).

“quantitative analysis of posture dynamics”: either show you can do it, or do not mention it. I would guess that a camera on top is not sufficient to do that.”

In response, we have included new data in the Supporting Information as S23 Video, demonstrating that the positions of the nose and hindquarters can be tracked using DeepLabCut. On this basis, we retained the corresponding statement in the Discussion.

“Additionally, the software includes a TTL signal output and timestamp functionality, enabling seamless integration with external devices for experiments involving optogenetics.”: please indicate time precision in ms if you want to discuss this.”

We thank the reviewer for this helpful comment. We agree that timing precision should be stated explicitly if TTL output is discussed. Because this value was not measured directly for the complete Operant House system, we have revised the manuscript to clarify that the cited precision is based on previously reported performance of the underlying platform, rather than on direct validation of the full setup in the present study.

“Please compare habituation time in hours too (in your setup 1 day is 24 hours, what is in Clelland et al ?”

Unfortunately, a comparison of habituation time in hours was not possible because Clelland et al. did not report the relevant procedural details. That study stated only that mice were pre-trained through several iterative stages, referring to Morton et al. (Nat. Methods, 2006), which likewise did not provide a detailed description of the duration of the habituation or pre-training sessions.

“Statistics:

Please give more information on statistics:

The representation and analysis of the data suppose the data is normally distributed, while it probably is not, at least it cannot be for 9A and 9B (as you may have mice never reaching the criteria). Please use boxplots or jitter points, and other tests (unless you can prove the data is normally distributed). Indicate how scores are calculated and give sample sizes (number of mice, number of trials): it should be one score per mice (not one score per trial), but this is not explained.”

In Fig. 9, all mice reached the criterion and proceeded to the TCSD task. Because the sample sizes were small, we did not perform formal tests for normality. In response to the reviewer’s suggestion, we therefore changed the statistical analyses for two-group comparisons from the t-test to the Mann–Whitney U test, and from the paired t-test to the Wilcoxon signed-rank test. For the two-way repeated-measures ANOVA, we retained this analysis because it was the most suitable method for assessing the effects of genotype and session in these repeated-measures data.

We have also clarified in the Materials and Methods section (“Data analysis and statistics”) that the scores used for the operant tasks were calculated on a per-session basis, not on a per-trial basis. Thus, each mouse contributed one score per day. The number of mice is indicated in the figure legends, and the numbers of trials are provided in Figs. 7H, 9F, 10G, S14F–J, S15E–H, S17E–H, and S18H.

Regarding data presentation, we added plots of individual data points to the quantitative graphs for the immunohistochemical analyses in Fig. S19. For the operant-task graphs, we retained the current format, as boxplots or jitter plots would become visually crowded given the number of groups and sessions and might reduce clarity. Because the underlying data are publicly available in our GitHub repository, readers interested in the detailed distribution of the data may access them there.

“You also often test the data multiple times without mentioning having a bonferroni correction. Be a bit more straight on your tests: for each experiment have one statistical test that matters first, and for any other test, you may not mention any statistics. Selecting part of the data for the analysis a posteriori is a p-hacking strategy.”

We thank the reviewer for this important comment. In the DNMTP and TCSD tasks, Bonferroni correction was applied when repeated comparisons were performed, and this is stated in both the figure legends and the Materials and Methods section.

Regarding the concern about multiple testing, our a priori hypothesis was specifically that AppNL-G-F mice would show impaired working memory relative to wild-type mice. Accordingly, the key analysis was focused on the working memory phase, whereas the earlier phases primarily served as shaping steps to habituate the mice to the apparatus and train them in the task rules. We therefore do not think it would be appropriate to combine all phases into a single statistical framework, as this would test a different and much broader hypothesis than the one addressed in this study. In addition, because the acquisition phase differed in duration across animals, it was not technically feasible to include all phases from VD1 through the working memory phase in a single repeated-measures ANOVA. We have clarified this rationale in the revised manuscript.

Additional change not directly requested by the reviewers

In Fig. S16, we found that, for one of the mice used in the DNMTP task, the touch-detection sensitivity for panel responses in Operant House version 2 had been lowered during the course of the experiment. We therefore replaced this figure with the corresponding dataset excluding this mouse. This change does not affect the results, interpretation, or conclusions of the manuscript.

Attachment

Submitted filename: Response to Reviewer_revision.pdf

pone.0360626.s025.pdf (225.8KB, pdf)

Decision Letter 1

Mario Treviño Villegas

9 Jul 2026

Dear Dr. Yuzaki,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

Reviewer #2: (No Response)

Reviewer #3: (No Response)

Reviewer #4: All comments have been addressed

Reviewer #5: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #2: Partly

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

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3. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #2: I Don't Know

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

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4. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #2: No

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

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5. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

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Reviewer #2:  Dear authors,

The manuscript has been only slightly changed. Please note I did not perform a review of the non-behavioral aspects of this paper. I leave it to the editor to state whether this part was reviewed enough from the other reviewers, as authors do not want to take them out.

Please add a section about data and code availability with correct links, and provide an archive of them (via zenodo or GIN). Please also add these links in the website. I could also not find the MIT licence, please make it more visible.

A lot of “response to the review” did not seem to have made their way into the manuscript, I am puzzled whether this is the latest version. In general, the response given are satisfactory, but I do not see the changes in the manuscript.

One exception where I want to insist: in the discussion, the authors should be focusing on discussing the results and not bragging about what else is possible with the hardware. They may mention other paradigms briefly, but it should not take more than two sentences (it is a whole paragraph). Discussion should not bring new information, but only discuss the results. People interested will look at the website, there is no need to mention this here. (“The data presented in the manuscript must support the conclusions drawn. » : no data in the paper means no need to discuss it).

Please also look at each answer and see why the manuscript does not contain answers you mention (for example discussion of performance compared to other 4 studies: still find only 2, only age of animals was added: please also discuss this: is it the same, is it better, why ? This is not the only example, please revisit).

The data provided is not the raw data and the claim from the authors that new graphs can be made out of may be inaccurate (I do not have time to look into details here). Please provide raw data as you get it out of the hardware, this is important for future users (so they know what to expect) and describe the analysis, that I supposed was made in excel ? This can be made in the github repository. I would also look again at the statistics when I get access to the data.

I put a lot of effort in my review, I expect the authors to do similar effort in modifying the manuscript.

Reviewer #3:  This manuscript presents the development of the Operant House, a low-cost and automated home-cage system for operant conditioning in mice. This is a well-designed study that addresses an important challenge in behavioral neuroscience. The system is affordable, flexible, and has the potential to make advanced behavioral testing available to more laboratories. The manuscript is clearly organized, and the revisions have improved several parts of the paper, especially the description of animal welfare and experimental methods. The work is suitable for publication after a few minor issues are addressed.

1. The statistical analyses appear appropriate, but some important details are still missing. The authors should report the sample size for every experiment more consistently in the Results or figure legends. It would also help to explain how normality was assessed before using parametric tests, why outliers were removed with the Smirnov-Grubbs test, and to include effect sizes where possible. These additions would make the statistical analysis more complete.

2. The authors state that the Operant House can support many behavioral tasks. While this is likely true, only the DNMTP and TCSD tasks are fully validated in this study. The Discussion should make a clearer distinction between tasks that have been experimentally tested and those that are expected to work but have not yet been validated.

3. The different findings between female and male AppNL-G-F mice are interesting. The Discussion would benefit from a little more explanation of why these sex differences may exist and whether they could reflect differences in disease progression or task demands.

4. The manuscript discusses the limitations of single housing, which is appreciated. Adding a brief description of body weight monitoring, health checks, or other welfare measures during the experiments would further strengthen this section.

This manuscript presents a useful and well-validated behavioral platform that could be valuable for many neuroscience laboratories. The study is carefully performed, and the main conclusions are supported by the data. The remaining concerns are relatively small and mainly involve improving the reporting of statistical methods, clarifying some methodological choices, and slightly strengthening the Discussion.

Reviewer #4:  The authors present an automated operant conditioning testing platform, and the experimental procedures are described in a detailed and accessible manner. However, I have a concern regarding how the relevant prior literature is framed.

The following two studies appear to be directly relevant to the present work:

・PLoS One. 2013 Dec 6;8(12). “A fully automated high-throughput training system for rodents.” PMID: 24349451

・Front Neural Circuits. 2017 Mar 1;11:10. “Automated Operant Conditioning in the Mouse Home Cage.” PMID: 28298887

Although these papers are cited in the Discussion section, I think they should also be introduced in the Introduction. Since readers generally encounter the rationale and background of a research article through the Introduction, directly relevant prior studies should be presented there to clarify what has already been established, what approaches have previously been developed, and what limitations or gaps remain. This would allow the novelty and significance of the present Operant House platform to be evaluated more clearly.

Reviewer #5:  Author has addressed all previous comments in a manner that is in my opinion acceptable. Congratulations on the paper and hope the design can be of use for many other labs.

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Reviewer #2: Yes:  Julien Colomb

Reviewer #3: No

Reviewer #4: No

Reviewer #5: No

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PLoS One. 2026 Oct 13;21(10):e0360626. doi: 10.1371/journal.pone.0360626.r005

Author response to Decision Letter 2


7 Sep 2026

Point-by-point responses to reviewers’ comments

We thank the reviewers for their time and constructive feedback, and we are encouraged that the remaining issues are relatively minor and can be addressed in the present revision. Below, we provide detailed, point-by-point responses to each comment. Newly added text in the revised manuscript is shown in blue in the marked-up copy.

Reviewer #2:

1. “The manuscript has been only slightly changed. Please note I did not perform a review of the non-behavioral aspects of this paper. I leave it to the editor to state whether this part was reviewed enough from the other reviewers, as authors do not want to take them out.

Please add a section about data and code availability with correct links, and provide an archive of them (via zenodo or GIN). Please also add these links in the website. I could also not find the MIT licence, please make it more visible.

A lot of “response to the review” did not seem to have made their way into the manuscript, I am puzzled whether this is the latest version. In general, the response given are satisfactory, but I do not see the changes in the manuscript.”

We thank the reviewer for these comments. We apologize that the extent of the revisions made in response to the previous review was not sufficiently apparent. The revisions were indicated in blue in the marked-up version but were not visible in the clean version, and the distinction between the two files may not have been sufficiently clear. To avoid any further confusion, we have carefully rechecked the current manuscript against every item in our previous point-by-point response and have confirmed that all of the revisions described there are included in the manuscript.

As stated in the previous version of the manuscript, the Python code (OperantHouse1.04.py) was publicly available at https://shintaro18.github.io/office1001.html, together with the files required for 3D printing and the complete parts list. The header of the Python code file, OperantHouse1.04.py, already contained the full MIT License notice. However, we agree that the licensing information was not sufficiently prominent on the website itself. To make it immediately visible, we have now added the statement “Software available on this website is released under the MIT License” to the copyright section of the website and have included a direct link to the MIT License.

In response to the reviewer’s request in the previous review round, the data underlying the study had also been uploaded to the same website. Upon rechecking the website, we found that some files were not accessible as intended because of a technical issue. We sincerely apologize for this problem. We have corrected the issue, tested all download links, and confirmed that the data and associated files are now accessible.

In addition, in accordance with the reviewer’s present request, we have deposited a permanent, versioned archive containing the original raw output files, processed datasets underlying the figures and statistical analyses, Python source code, 3D-printing files, parts list, and associated documentation in Zenodo (doi.org/10.5281/zenodo.22019760). The permanent archive link has also been added to the project website.

Finally, we have added a dedicated “Data and Code Availability” section to the revised manuscript. This section provides direct links to both the project website and the permanent Zenodo archive and clearly specifies the locations of the underlying data, source code, 3D-printing files, parts list, and licensing information.

2. ”One exception where I want to insist: in the discussion, the authors should be focusing on discussing the results and not bragging about what else is possible with the hardware. They may mention other paradigms briefly, but it should not take more than two sentences (it is a whole paragraph).”

We thank the reviewer for this comment. We apologize if the paragraph gave the impression that we intended to promote or overstate the capabilities of the hardware. This was not our intention. The paragraph was originally included to clarify the broader applicability of the system and its distinction from existing approaches in response to comments raised during the earlier review process.

Nevertheless, we agree that the Discussion should focus primarily on the findings of the present study. Accordingly, we have substantially shortened the relevant paragraph in the Discussion to two sentences, as suggested by the reviewer. We have also revised the Results and Discussion to clearly distinguish among tasks that were experimentally demonstrated in the present study, tasks that have been evaluated in a separate study, and other paradigms that have been implemented and technically tested but have not yet undergone systematic behavioral validation in animals.

3. ”Please also look at each answer and see why the manuscript does not contain answers you mention (for example discussion of performance compared to other 4 studies: still find only 2, only age of animals was added: please also discuss this: is it the same, is it better, why ? This is not the only example, please revisit).”

We thank the reviewer for pointing this out. We have carefully re-examined the entire manuscript together with our previous point-by-point response to confirm that each change described in the response is clearly reflected in the manuscript.

Regarding the comparison with four previous studies, all four studies were included in the previously revised manuscript, although we recognize that the relevant comparisons were distributed between the Results and Discussion and may therefore not have been sufficiently easy to identify. Specifically, in the Discussion, we compared performance in the working-memory task conducted in Operant House with that reported for a conventional non-home-cage touchscreen-based delayed non-matching-to-position (DNMTP) task by Kwak et al. (2015). We also compared our results with those obtained using a conventional touchscreen-based location-discrimination task by Clelland et al. (2009), including the available information on the age and sex of the animals. In addition, we discussed the results of a location-discrimination (LD) task performed in a conventional non-home-cage touchscreen apparatus by Saifullah et al. (2020) in relation to performance in the corresponding task in Operant House. Finally, in the Results, we compared acquisition of the lever-press task in Operant House with that reported using a conventional non-home-cage lever-press apparatus by Yu et al. (2009). In accordance with the reviewer’s previous suggestion, we included the age, sex, and genetic background of the animals wherever this information was available. However, we agree that listing these experimental characteristics alone does not make sufficiently clear whether the behavioral performance was comparable to, or more efficient than, that reported previously. We have therefore revised the relevant sections to state more explicitly, for each comparison, whether the final behavioral performance was comparable, whether task acquisition or completion was faster, and which methodological differences limit direct quantitative comparison.

In brief, the revised text now clarifies that Operant House produced behavioral performance broadly comparable to that reported using conventional non-home-cage apparatuses, while shortening task acquisition or preparatory training in some paradigms. At the same time, we have avoided claiming superiority where differences in task design, training criteria, mouse strain, age, sex, or reporting methods preclude a rigorous direct comparison.

To make these comparisons easier to locate, we have consolidated and more clearly signposted the relevant text in the revised manuscript and have explicitly described the paradigm, apparatus, available animal characteristics, training duration, and principal performance measures for the relevant comparisons. We have also reviewed all other responses from the previous round and confirmed that the corresponding revisions are present and clearly identifiable in the marked-up manuscript.

4. “The data provided is not the raw data and the claim from the authors that new graphs can be made out of may be inaccurate (I do not have time to look into details here). Please provide raw data as you get it out of the hardware, this is important for future users (so they know what to expect) and describe the analysis, that I supposed was made in excel? This can be made in the github repository. I would also look again at the statistics when I get access to the data.”

We thank the reviewer for this important comment. In the previous revision, we made available the processed numerical data used to generate the graphs in the manuscript. These files allow the figures to be reproduced and alternative graphs to be generated from the processed values, but we agree that they are not the original files directly produced by the Operant House hardware. We apologize that this distinction was not sufficiently clear.

In response to the reviewer’s request, we have now uploaded the original raw output files generated directly by Operant House for all experiments reported in the manuscript, except for the video files, to both the GitHub repository (https://github.com/Shintaro18/DataForOperantHousePaper_PlosOne) and the permanent Zenodo archive (doi.org/10.5281/zenodo.22019760). These raw files include, for example, the original Touch*.txt and Touch*.csv files generated during behavioral testing.

The Operant House software has been updated several times during the course of this study, and the format of the raw output files consequently differs among software versions. Different file formats therefore require the corresponding analysis program or Excel spreadsheet. To make the relationship between the raw data and the appropriate analysis method clear, we have organized the repository by data format and placed the corresponding analysis program or spreadsheet in the same folder as each set of raw data. We have also added a README file that specifies, for each experiment:

1. the format and contents of the raw output files;

2. the corresponding analysis program or spreadsheet;

3. the manuscript figure and panel to which each dataset corresponds.

For datasets analyzed using the dedicated Windows programs, users can run the corresponding executable file and drag and drop the relevant raw data file, such as a Touch*.txt or Touch*.csv file, into the program. The program filenames and the README clearly indicate which raw-data format is supported by each program. Where Excel was used for subsequent calculations or graph preparation, we have provided the corresponding spreadsheets, including the formulas used to derive the plotted values. We have also expanded the “Data Analysis and statistics” subsection of the revised manuscript to describe this workflow.

The video files generated during behavioral testing were not included in the GitHub repository because each file is typically approximately 300 MB and the complete set is very large. These videos were used for routine monitoring and were not used to derive the quantitative outcomes reported in the manuscript. To show future users the format and quality of the video output, we have provided a representative video file in the permanent archive (doi.org/10.5281/zenodo.22019760).

Finally, we have rechecked the processed datasets against the raw output files and re-examined all statistical analyses. Where appropriate, the statistical methods were revised to account explicitly for repeated measurements, data distribution, and multiple comparisons, as detailed in our responses to Reviewer #3, and effect-size estimates have been added where applicable. The numerical source data underlying each figure, together with the files used for statistical analysis, are now included in the archive. We have also added clearer descriptions of the statistical procedures to the Methods and have provided the software and settings used for each analysis. We hope that these additions will allow the reviewer and future users to inspect the original hardware output and reproduce the data-processing and statistical-analysis workflow.

Reviewer #3:

“This manuscript presents the development of the Operant House, a low-cost and automated home-cage system for operant conditioning in mice. This is a well-designed study that addresses an important challenge in behavioral neuroscience. The system is affordable, flexible, and has the potential to make advanced behavioral testing available to more laboratories. The manuscript is clearly organized, and the revisions have improved several parts of the paper, especially the description of animal welfare and experimental methods. The work is suitable for publication after a few minor issues are addressed.”

1. “The statistical analyses appear appropriate, but some important details are still missing. The authors should report the sample size for every experiment more consistently in the Results or figure legends. It would also help to explain how normality was assessed before using parametric tests, why outliers were removed with the Smirnov-Grubbs test, and to include effect sizes where possible. These additions would make the statistical analysis more complete.”

We thank the reviewer for these helpful suggestions. We have carefully rechecked all experiments and revised the Methods and figure legends to report the number of animals and, where applicable, the number of sections, cells, or recordings contributing to each analysis. For the principal behavioral analyses, the individual animal was treated as the experimental unit, and repeated observations within animals were analyzed using mixed-effects models.

We comprehensively re-examined the statistical analyses to better account for the distribution and repeated-measures structure of the data. Correct/incorrect responses in the operant tasks are now analyzed using generalized linear mixed-effects models (GLMMs) with a binomial error distribution and logit link function, with genotype or treatment condition and session (or other repeated-measure factors, as appropriate) as fixed effects and mouse identity as a random effect. Post hoc comparisons are adjusted using the Holm method, and odds ratios (ORs) are reported as effect-size estimates. Simulation-based model diagnostics were performed to assess residual uniformity, dispersion, and potential outliers.

For continuous outcomes involving repeated measurements, we now use linear mixed-effects models (LMMs), with group, the repeated-measure factor, and their interaction as fixed effects and mouse identity as a random effect. Model assumptions were evaluated after fitting the models by examining residual distributions, including assessment of residual normality using the Shapiro–Wilk test. Where necessary, data were transformed to satisfy model assumptions. Post hoc comparisons were adjusted using the Holm method, and Hedges’ g is reported as an effect-size estimate for pairwise comparisons where applicable.

We also reconsidered our previous use of the Smirnov–Grubbs test for outlier exclusion. In the revised mixed-effects analyses, no observations were excluded solely on the basis of statistical outlier testing; potential outliers were instead evaluated as part of the model-diagnostic procedure. The revised “Data analysis and statistics” subsection now describes these procedures explicitly.

Finally, we clarified the unit of analysis for the supportive histological and electrophysiological experiments in Figs. S19–S21. For Fig. S19, section-level measurements were averaged within each mouse, and the mouse was treated as the experimental unit. For the electrophysiological analyses in Figs. S20 and S21, individual recorded neurons or slice recordings were treated as observational units, and the numbers of both animals and recordings are explicitly reported in the corresponding figure legends. In Fig. S20, Levene’s test was used specifically to assess cell-to-cell variability, which is interpreted as cellular heterogeneity rather than as an animal-level estimate of genotype variance.

Thus, the revised manuscript now reports sample sizes and units of analysis explicitly, uses statistical models appropriate to the data structure, describes model diagnostics and multiple-comparison procedures, and provides effect-size estimates where applicable.

2. “The authors state that the Operant House can support many behavioral tasks. While this is likely true, only the DNMTP and TCSD tasks are fully validated in this study. The Discussion should make a clearer distinction between tasks that have been experimentally tested and those that are expected to work but have not yet been validated.”

We thank the reviewer for this important comment. We agree that the previous wording did not distinguish sufficiently clearly between tasks that have been implemented and technically tested in the Operant House software and tasks that have been evaluated experimentally in animals.

All of the tasks listed in the manuscript have been implemented in the source code available on the project website, and we have confirmed that the corresponding programs operate as intended at the software and hardware levels. However, as the reviewer correctly notes, technical implementation does not by itself constitute behavioral validation.

In the present study, the visual discrimination, lever-press, DNMTP, and TCSD tasks were experimentally demonstrated in mice, with the DNMTP and TCSD tasks being used to characterize cognitive phenotypes in AppNL-G-F mice. During the review of this manuscript, a separate study using the Operant House to perform a trial-unique nonmatching-to-location (TUNL) task was also accepted for publication. Thus, the TUNL task has now been evaluated experimentally in a separate study, although it was not validated as part of the present manuscript.

In accordance with the reviewer’s suggestion, we have revised the Discussion to distinguish explicitly among: (1) tasks experimentally examined in the present study; (2) the TUNL task, which has been evaluated in a separate study; and (3) other tasks that have been implemented and technically tested but have not yet undergone systematic behavioral validation in animals. We have also revised statements that could have implied that all available tasks had been behaviorally validated. The revised text now states clearly that the unvalidated tasks represent potential applications of the system that will require task-specific experimental validation.

3. “The different findings between female and male AppNL-G-F mice are interesting. The Discussion would benefit from a little more explanation of why these sex differences may exist and whether they could reflect differences in disease progression or task demands.”

We thank the reviewer for this thoughtful comment. We agree that the sex-dependent behavioral phenotypes observed in AppNL-G-F mice are interesting and warrant further consideration. In the previous version of the Discussion, we compared our findings with earlier studies reporting sex-dependent differences in the behavioral phenotypes of AppNL-G-F mice and discussed the possibility that the DNMTP and TCSD tasks assess partially distinct cognitive processes.

To address the reviewer’s comment more directly, we have now expanded this discussion to clarify that the observed differences could reflect either sex-dependent trajectories of disease-related circuit dysfunction or differences in the cognitive and behavioral demands of the two tasks. The DNMTP task requires animals to retain and update information across a delay, whereas the TCSD task requires discrimination among spatially distributed visual stimuli and may place different demands on cognitive flexibility and response selection. However, because the present study was not designed to compare neuropathological progression or circuit dysfunction between female and male mice, we cannot distinguish among these possibilities. We have therefore presented these interpretations cautiously and have explicitly identified them as hypotheses requiring further investigation.

4. “The manuscript discusses the limitations of single housing, which is appreciated. Adding a brief description of body weight monitoring, health checks, or other welfare measures during the experiments would further strengthen this section.”

We thank the reviewer for this helpful suggestion. We agree that the procedures used to monitor animal welfare during prolonged individual housing should be described more clearly.

During the experiments, body weight was measured daily, and the general condition of each animal was assessed by visual inspection. The health checks included assessment of appearance and grooming, posture, spontaneous activity, apparent food and water intake, and any signs of injury or distress. Body weight was used as an important objective indicator for detecting possible deterioration in health. Animals showing substantial weight loss, abnormal behavior, or other signs of poor health would have been promptly evaluated and, when appropriate, removed from the experiment in accordance with the predetermined humane-endpoint criteria. No animals met these exclusion or humane-endpoint criteria during the experiments.

We have added these welfare-monitoring procedures to the Materials and Methods. We have also added a brief statement to the Discussion emphasizing that, when Operant House is used under individually housed conditions, regular body-weight measurements and visual health assessments are important for identifying potential welfare problems at an early stage.

5. “This manuscript presents a useful and well-validated behavioral platform that could be valuable for many neuroscience laboratories. The study is carefully performed, and the main conclusions are supported by the data. The remaining concerns are relatively small and mainly involve improving the reporting of statistical methods, clarifying some methodological choices, and slightly strengthening the Discussion.”

We sincerely thank the reviewer for this encouraging assessment of our work. We greatly appreciate the reviewer’s careful and constructive evaluation throughout the review process. The comments have helped us improve the clarity of the statistical reporting, methodological descriptions, and Discussion.

Reviewer #4:

1. “The authors present an automated operant conditioning testing platform, and the experimental procedures are described in a detailed and accessible manner. However, I have a concern regarding how the relevant prior literature is framed.

The following two studies appear to be directly relevant to the present work:

・PLoS One. 2013 Dec 6;8(12). “A fully automated high-throughput training system for rodents.” PMID: 24349451

・Front Neural Circuits. 2017 Mar 1;11:10. “Automated Operant Conditioning in the Mouse Home Cage.” PMID: 28298887

Although these papers are cited in the Discussion section, I think they should also be introduced in the Introduction. Since readers generally encounter the rationale and background of a research article through the Introduction, directly relevant prior studies should be presented there to clarify what has already been established, what approaches have previously been developed, and what limitations or gaps remain. This would allow the novelty and significance of the present Operant House platform to be evaluated more clearly.”

We thank the reviewer for this helpful suggestion. We agree that these two directly relevant studies should be introduced in the Introduction, rather than being discussed only later in the manuscript. Accordingly, we have now cited and described both studies in the revised Introduction. We have also clarified what these earlier automated operant-conditioning systems established, as well as the remaining practical and methodological gaps that motivated the development of Operant House. Specifically, the revised text now places Operant House in the context of previous automated and home-cage-based systems by describing both their important contributions and the practical limitations that may restrict broader adoption or flexibility across behavioral paradigms. We then explain how Operant House was designed to address these remaining needs through its combination of low cost, modular hardware, open-source software, compatibility with multiple behavioral paradigms, and suitability for automated testing in individual home cages. We believe that this revised framing places the contribution of Operant House more clearly in the context of prior work without overstating its novelty.

Reviewer #5:

1. “Author has addressed all previous comments in a manner that is in my opinion acceptable. Congratulations on the paper and hope the design can be of use for many other labs.”

We sincerely thank the reviewer for this encouraging comment and for the constructive suggestions provided during the review process. We are very pleased that the reviewer considers our responses and revisions acceptable, and we share the hope that Operant House will be useful to many laboratories.

Attachment

Submitted filename: Point-by-point response_v2.docx

pone.0360626.s026.docx (32.7KB, docx)

Decision Letter 2

Mario Treviño Villegas

13 Sep 2026

Dear Dr. Yuzaki,

Thank you for submitting your manuscript to PLOS One. After careful consideration, we feel that it has merit but does not fully meet PLOS One’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

One reviewer has raised a few remaining minor points that should be addressed before I can make a final decision. Please consider the following comments carefully in your revision:

  1. TCSD interpretation:  Please be more cautious when describing TCSD deficits as evidence of working-memory impairment, as the task also involves behavioral flexibility and response selection.

  2. Small lesion groups:  The lesion experiments include very small sample sizes (n = 3–4 per group). The conclusions regarding the role of the PFC should therefore be presented more cautiously, taking this limitation into account.

  3. Electrophysiology:  Several neurons were recorded from the same animals, which may raise concerns regarding statistical independence. Please clearly report the number of animals and cells recorded per animal and explain how this issue was addressed in the statistical analyses.

  4. Delay-time selection:  Selecting trials based on the actual delay achieved may introduce potential selection bias. Please report how many trials were excluded on this basis and discuss this limitation.

  5. Water restriction:  Because motivation can influence operant performance, please report body-weight and water-intake data, or provide a clearer discussion of these factors and their potential influence on the behavioral results.

Please address these points carefully in the revised manuscript and indicate the corresponding changes clearly.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

Reviewer #3: (No Response)

Reviewer #4: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #3: Yes

Reviewer #4: Yes

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3. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #3: Yes

Reviewer #4: Yes

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4. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #3: Yes

Reviewer #4: Yes

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5. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #3: Yes

Reviewer #4: Yes

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Reviewer #3: The revised manuscript has improved and most previous comments have been addressed. However, a few important issues remain:

1. TCSD interpretation: The authors should be more cautious in describing TCSD deficits as working-memory impairment, since the task also involves behavioral flexibility and response selection.

2. Small lesion groups: The lesion experiments have very small sample sizes (n=3–4 per group). The conclusions about the role of the PFC should therefore be presented more cautiously.

3. Electrophysiology: Several neurons were recorded from the same animals, which may raise concerns about statistical independence. The authors should clearly report the number of animals and cells per animal and explain how this was handled.

4. Delay-time selection: Selecting trials based on the actual delay achieved may introduce bias. The authors should report how many trials were excluded and discuss this limitation.

5. Water restriction: Since motivation can affect operant performance, body-weight and water-intake data should be reported or discussed more clearly.

Overall, the revision is substantial, but these points should be addressed before publication.

Reviewer #4: The authors have adequately addressed my concern by adding the relevant previous studies to the Introduction and clarifying the position of the present work in relation to these earlier systems. I have no further comments and recommend acceptance of the manuscript.

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Reviewer #3: No

Reviewer #4: No

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PLoS One. 2026 Oct 13;21(10):e0360626. doi: 10.1371/journal.pone.0360626.r007

Author response to Decision Letter 3


22 Sep 2026

Point-by-point responses to Reviewers’ comments

We thank the Academic Editor and Reviewers for careful review of our revised manuscript and for identifying the remaining issues. These points correspond to the comments raised by Reviewer #3 and are addressed individually below. We believe that these constructive comments have helped us to improve the clarity of the manuscript and the rigor with which the behavioral and electrophysiological findings are interpreted.

Reviewer #3:

1. TCSD interpretation “The authors should be more cautious in describing TCSD deficits as working-memory impairment, since the task also involves behavioral flexibility and response selection.”

We agree with the Reviewer. We have revised the manuscript throughout to distinguish the interpretation of the DNMTP and TCSD tasks more clearly. The DNMTP task is described as directly assessing working memory, whereas TCSD performance is now described as reflecting multiple cognitive processes, including working-memory-related processes, behavioral flexibility, and response selection.

Accordingly, we have revised the Abstract, Introduction, Results, Discussion, figure titles, and concluding statements where necessary. For example, the Discussion now states:

“The DNMTP task directly assesses working memory, whereas performance in the TCSD task likely reflects multiple cognitive processes, including working memory, behavioral flexibility, and response selection.”

Similarly, the Results now describe the phenotype of male AppNL-G-F mice as “impaired TCSD performance, consistent with deficits in working-memory-related processes and/or behavioral flexibility and response selection,” rather than simply as working-memory impairment. The title of Fig. 10 has also been revised to state that male AppNL-G-F mice exhibit “impaired performance in the TCSD task.”

Finally, the overall conclusion now refers to the detection of “early cognitive deficits” in AppNL-G-F mice, while specifically identifying working-memory impairment as the phenotype detected by the DNMTP task.

2. Small lesion groups ” The lesion experiments have very small sample sizes (n = 3–4 per group). The conclusions about the role of the PFC should therefore be presented more cautiously.”

We agree that the relatively small group sizes in the lesion experiments limit the strength and precision of the conclusions that can be drawn regarding prefrontal cortex involvement.

We have therefore revised the Discussion to state explicitly:

“Because the lesion experiments involved relatively small groups (n = 3–4 per group), these findings should be regarded as supportive evidence for prefrontal involvement and interpreted cautiously with respect to the magnitude of the lesion effects.”

We have also moderated the corresponding language in the Results. For the TCSD experiment, we now describe the lesion phenotype as “impaired TCSD performance” and conclude that the findings “support a contribution of the prefrontal cortex to TCSD performance,” rather than interpreting the lesion effect as definitive evidence of working-memory impairment.

Similarly, for the DNMTP experiment, the delay-restricted analysis is now described as a sensitivity analysis supporting the primary all-trial analysis, rather than as independently confirming a lesion-induced working-memory deficit.

3. Electrophysiology “Several neurons were recorded from the same animals, which may raise concerns about statistical independence. The authors should clearly report the number of animals and cells per animal and explain how this was handled.”

We thank the Reviewer for raising this important statistical issue. We agree that multiple cells or slices obtained from the same animal cannot be regarded as fully independent biological replicates.

We therefore reanalyzed all genotype comparisons in the electrophysiological experiments shown in S20 and S21 using heteroscedastic linear mixed-effects models. Individual cells (S20) or slice recordings (S21) were retained as observational units, while mouse identity was included as a random intercept to account explicitly for the clustering of multiple recordings within the same animal. Genotype was included as a fixed effect, and genotype-specific residual variances were allowed using the varIdent variance structure in the nlme package. Thus, the individual recordings contribute information to the analysis, while their non-independence within each animal is explicitly accounted for.

For S20, the numbers of recordings from individual animals are now reported explicitly in the figure legend. The recording numbers were as follows:

• S20A: wild-type, 22 cells from 3 mice (12, 2, and 8 cells per mouse); AppNL-G-F, 22 cells from 3 mice (11, 6, and 5 cells per mouse).

• S20B, mEPSCs: wild-type, 14 cells from 4 mice (3, 3, 3, and 5 cells per mouse); AppNL-G-F, 22 cells from 3 mice (8, 9, and 5 cells per mouse).

• S20B, mIPSCs: wild-type, 15 cells from 4 mice (3, 4, 3, and 5 cells per mouse); AppNL-G-F, 17 cells from 3 mice (2, 9, and 6 cells per mouse).

• S20C, I/E ratio: 13 cells from 3 mice per genotype (wild-type: 6, 4, and 3 cells per mouse; AppNL-G-F: 3, 5, and 5 cells per mouse).

For the previously reported difference in cell-to-cell variability in the I/E ratio, we additionally compared a homoscedastic model with a heteroscedastic model allowing genotype-specific residual variances. Because residuals from the untransformed I/E-ratio data were non-normally distributed, the data were natural-log transformed before the final analysis. The estimated residual cell-to-cell variability in the I/E ratio was greater in AppNL-G-F mice, and the heteroscedastic model provided a significantly better fit than the homoscedastic model (likelihood-ratio test, χ²(1) = 23.31, p < 0.0001).

We also reanalyzed mIPSC frequency using the mixed-effects framework. After transformation required to satisfy the residual-normality assumption, the previously observed genotype difference in variability was no longer significant. We therefore removed the previous claim of increased mIPSC-frequency variability from the revised manuscript.

For S21, LTP magnitude and paired-pulse ratio were also reanalyzed using heteroscedastic linear mixed-effects models with mouse identity included as a random intercept. For each genotype, 9 slice recordings were obtained from 3 mice, with 3 slices recorded from each mouse. Neither LTP magnitude (F(1, 4) = 0.059, p = 0.821) nor paired-pulse ratio (F(1, 4) = 0.289, p = 0.620) differed significantly between genotypes.

The Methods, Results, and S20/S21 figure legends have been revised accordingly. We have also clarified that individual-cell and individual-slice measurements are retained as observational units, whereas genotype-level statistical inference is performed using mixed-effects models that explicitly account for clustering of multiple recordings within individual animals.

4. Delay-time selection “Selecting trials based on the actual delay achieved may introduce bias. The authors should report how many trials were excluded and discuss this limitation.”

We agree with the Reviewer that restricting analyses according to actual delay duration may introduce selection bias because actual delay duration itself can be influenced by the animal’s behavioral state.

We have therefore revised the manuscript in three ways.

First, we now explicitly distinguish the primary analyses, which include all trials, from the delay-restricted analyses, which are treated as sensitivity analyses. The same delay criterion was applied to all experimental groups and was based solely on actual delay duration, irrespective of whether the trial response was correct or incorrect.

Second, we now report the exact numbers and proportions of retained and excluded trials for each delay-restricted analysis:

• DNMTP lesion experiment (Fig. 6): 1,231 of 1,783 saline trials (69.0%) and 1,309 of 2,013 IBO trials (65.0%) were retained; 552 (31.0%) and 704 (35.0%) trials, respectively, were excluded.

• DNMTP AppNL-G-F experiment (Fig. 7): 2,756 of 3,403 wild-type trials (81.0%) and 2,909 of 3,700 AppNL-G-F trials (78.6%) were retained; 647 (19.0%) and 791 (21.4%) trials, respectively, were excluded.

• TCSD lesion experiment (Fig. 9): 445 of 1,514 saline trials (29.4%) and 210 of 1,398 IBO trials (15.0%) were retained; 1,069 (70.6%) and 1,188 (85.0%) trials, respectively, were excluded.

• TCSD AppNL-G-F experiment (Fig. 10): 3,728 of 5,019 wild-type trials (74.3%) and 2,696 of 4,531 AppNL-G-F trials (59.5%) were retained; 1,291 (25.7%) and 1,835 (40.5%) trials, respectively, were excluded.

Third, we have added an explicit limitation to the Discussion. We note that selection based on actual delay duration could retain different subsets of trials across experimental groups, particularly in the TCSD experiments, in which the proportions of retained trials differed substantially between groups. We therefore interpret the delay-restricted analyses only as sensitivity analyses used to determine whether the principal findings persisted when variability in actual delay duration was reduced; they are not treated as independent confirmatory analyses. The primary conclusions are based on analyses including all trials.

5. Water restriction “Since motivation can affect operant performance, body-weight and water-intake data should be reported or discussed more clearly.”

We agree that motivational state is an important consideration in water-reinforced operant tasks.

We have therefore clarified the water-access protocol and animal monitoring procedures in the Methods. For the DNMTP and TCSD paradigms, cumulative water-access duration was monitored during each daily session. If water-access duration was below the predefined level (DNMTP: 160 s; TCSD: 300 s), supplemental water access was provided immediately after the session. We also clarify that the programmed variable was water-access duration, and that the actual volume of water consumed by each mouse was not directly measured.

Body weight was measured daily as part of routine welfare monitoring during behavioral testing, together with visual assessment of general appearance, grooming, posture, spontaneous activity, apparent food and water intake, and signs of injury or distress.

In addition, we recovered paired body-weight measurements from six wild-type mice tested in independent Operant House version 2 experiments using the same programmed DNMTP water-access regimen (up to 80 water-access periods of 2 s each; maximum programmed access duration, 160 s/day). Mean body weight was 22.47 ± 0.52 g before testing and 21.89 ± 1.11 g after testing, corresponding to no significant group-level change (paired t-test, t(5) = −0.65, p = 0.545). These data have now been added to the Results.

We have also added a limitation to the Discussion. Specifically, because task performance was reinforced by access to water, we acknowledge that differences in motivational state related to thirst cannot be completely excluded. Moreover, because actual water consumption was not directly measured and the available paired body-weight data were obtained from independent experiments rather than from all principal experimental cohorts, individual or genotype-dependent differences in hydration or motivation remain possible.

Reviewer #4: “All comments have been addressed.”

We thank Reviewer #4 for the careful evaluation of our revised manuscript and are grateful that the Reviewer considers the previous concerns to have been adequately addressed. No additional changes were required in response to this comment.

Attachment

Submitted filename: Point-by-point response_final.docx

pone.0360626.s027.docx (26.5KB, docx)

Decision Letter 3

Mario Treviño Villegas

30 Sep 2026

<p>Operant House: A Versatile Open-Source Platform for Automated Operant Conditioning Testing of Mice in Home Cages

PONE-D-25-65341R3

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Fig. Main parts list.

    (PDF)

    pone.0360626.s001.pdf (168.7KB, pdf)
    S2 Fig. Tool list for fabrication.

    (PDF)

    pone.0360626.s002.pdf (89.4KB, pdf)
    S3 Fig. Exploded-view diagram of Operant House Version 2 (top) and summary of the differences between Versions 1 and 2 (bottom).

    (PDF)

    pone.0360626.s003.pdf (399.1KB, pdf)
    S4 Fig. Assembly instructions for the 3D-printed parts.

    (PDF)

    pone.0360626.s004.pdf (427KB, pdf)
    S5 Fig. A schematic illustration of the circuitry of the switching board that controls the LEDs and a servo.

    (PDF)

    pone.0360626.s005.pdf (542.3KB, pdf)
    S6 Fig. Assembly instructions for LED wiring.

    (PDF)

    pone.0360626.s006.pdf (538KB, pdf)
    S7 Fig. Assembly instruction for wiring the IR and green LEDs.

    (PDF)

    pone.0360626.s007.pdf (596.5KB, pdf)
    S8 Fig. Assembly instruction for servo, Arduino and ventilation fan wiring.

    (PDF)

    pone.0360626.s008.pdf (467KB, pdf)
    S9 Fig. Mounting instructions for the Raspberry Pi, Arduino, and switching board.

    (PDF)

    pone.0360626.s009.pdf (567.8KB, pdf)
    S10 Fig. Assembly instructions for the camera, ventilation fan, and LEDs.

    (PDF)

    pone.0360626.s010.pdf (538.4KB, pdf)
    S11 Fig. Wiring of each component and external appearance of the completed device.

    (PDF)

    pone.0360626.s011.pdf (485.3KB, pdf)
    S12 Fig. Setup instruction for the Raspberry Pi 4B.

    (PDF)

    pone.0360626.s012.pdf (623.7KB, pdf)
    S13 Fig. Retractable lever modules.

    (PDF)

    pone.0360626.s013.pdf (392.2KB, pdf)
    S14 Fig. Additional results from the DNMTP test in wild-type mice.

    (PDF)

    pone.0360626.s014.pdf (1.1MB, pdf)
    S15 Fig. Additional results from the DNMTP task in wild-type mice with prefrontal cortex lesions induced by ibotenic acid.

    (PDF)

    pone.0360626.s015.pdf (1.1MB, pdf)
    S16 Fig. Results of the DNMTP test using Operant House Version 2.

    (PDF)

    pone.0360626.s016.pdf (606.8KB, pdf)
    S17 Fig. Additional results of the DNMTP test in female AppNL−G−F mice.

    (PDF)

    pone.0360626.s017.pdf (995.3KB, pdf)
    S18 Fig. Male AppNL−G−F mice exhibited normal working memory in the DNMTP test at 5 months of age.

    (PDF)

    pone.0360626.s018.pdf (928.6KB, pdf)
    S19 Fig. Reduced presynaptic marker immunoreactivity within Aβ plaques in the mPFC of AppNL-G-F mice at 5 months of age.

    (PDF)

    pone.0360626.s019.pdf (648.3KB, pdf)
    S20 Fig. Increased variability in excitatory–inhibitory balance in AppNL-G-F mice at 5 months of age.

    (PDF)

    pone.0360626.s020.pdf (1.4MB, pdf)
    S21 Fig. No detectable alteration in hippocampal long-term potentiation (LTP) in 5-month-old AppNL-G-F mice.

    (PDF)

    pone.0360626.s021.pdf (763.1KB, pdf)
    S1 Video. Automated detection of nose pokes during the VD2 session using Operant House Version 2.

    (AVI)

    Download video file (55.8MB, avi)
    S2 Video. Analysis of behavioral patterns using the built-in camera of the Operant House and DeepLabCut.

    (AVI)

    Download video file (12.2MB, avi)
    Attachment

    Submitted filename: Response to reviewer_final.pdf

    pone.0360626.s024.pdf (316.6KB, pdf)
    Attachment

    Submitted filename: Response to Reviewer_revision.pdf

    pone.0360626.s025.pdf (225.8KB, pdf)
    Attachment

    Submitted filename: Point-by-point response_v2.docx

    pone.0360626.s026.docx (32.7KB, docx)
    Attachment

    Submitted filename: Point-by-point response_final.docx

    pone.0360626.s027.docx (26.5KB, docx)

    Data Availability Statement

    All relevant data for this study are publicly available from the Zenodo (doi.org/10.5281/zenodo.22019760) and GitHub (https://shintaro18.github.io) repositories.


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