Skip to main content
RNA logoLink to RNA
. 2000 Nov;6(11):1597–1609. doi: 10.1017/s1355838200001138

The Ct-RAE1 protein interacts with Balbiani ring RNP particles at the nuclear pore.

N Sabri 1, N Visa 1
PMCID: PMC1370029  PMID: 11105759

Abstract

RAE1 is an evolutionarily conserved protein that associates with both mRNPs and nucleoporins, and may bridge the interaction between mRNP export cargoes and the nuclear pore complex (NPC). However, the mechanism by which RAE1 functions in mRNA export is still unknown and the time point at which RAE1 interacts with the exported RNP has not been directly investigated. Here we have addressed this question in the Balbiani ring (BR) system of Chironomus tentans using immunoelectron microscopy. The RAE1 protein of C. tentans, Ct-RAE1, is 70% identical to human RAE1/mrnp41 (hRAE1) and is recognized by antibodies raised against hRAE1. As in vertebrate cells, Ct-RAE1 is concentrated at the nuclear envelope and also dispersed throughout the nuclear interior. Here we show that Ct-RAE1 does not bind to the BR particle either cotranscriptionally or in the nucleoplasm. Instead, the interaction between Ct-RAE1 and the exported BR particle occurs at the NPC. Moreover, the localization of Ct-RAE1 at the NPC is correlated with the presence of an exported RNP in the NPC. Finally, the anti-RAE1 antibody does not label the cytoplasmic side of BR particles in transit through the central channel, which indicates that Ct-RAE1 either remains anchored at the nuclear side of the NPC during translocation of the RNP through the central channel or becomes transiently associated with the RNP but is rapidly released into the cytoplasm.

Full Text

The Full Text of this article is available as a PDF (1.9 MB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Alzhanova-Ericsson A. T., Sun X., Visa N., Kiseleva E., Wurtz T., Daneholt B. A protein of the SR family of splicing factors binds extensively to exonic Balbiani ring pre-mRNA and accompanies the RNA from the gene to the nuclear pore. Genes Dev. 1996 Nov 15;10(22):2881–2893. doi: 10.1101/gad.10.22.2881. [DOI] [PubMed] [Google Scholar]
  2. Bachi A., Braun I. C., Rodrigues J. P., Panté N., Ribbeck K., von Kobbe C., Kutay U., Wilm M., Görlich D., Carmo-Fonseca M. The C-terminal domain of TAP interacts with the nuclear pore complex and promotes export of specific CTE-bearing RNA substrates. RNA. 2000 Jan;6(1):136–158. doi: 10.1017/s1355838200991994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bailer S. M., Siniossoglou S., Podtelejnikov A., Hellwig A., Mann M., Hurt E. Nup116p and nup100p are interchangeable through a conserved motif which constitutes a docking site for the mRNA transport factor gle2p. EMBO J. 1998 Feb 16;17(4):1107–1119. doi: 10.1093/emboj/17.4.1107. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Baurén G., Wieslander L. Splicing of Balbiani ring 1 gene pre-mRNA occurs simultaneously with transcription. Cell. 1994 Jan 14;76(1):183–192. doi: 10.1016/0092-8674(94)90182-1. [DOI] [PubMed] [Google Scholar]
  5. Bharathi A., Ghosh A., Whalen W. A., Yoon J. H., Pu R., Dasso M., Dhar R. The human RAE1 gene is a functional homologue of Schizosaccharomyces pombe rae1 gene involved in nuclear export of Poly(A)+ RNA. Gene. 1997 Oct 1;198(1-2):251–258. doi: 10.1016/s0378-1119(97)00322-3. [DOI] [PubMed] [Google Scholar]
  6. Braun I. C., Rohrbach E., Schmitt C., Izaurralde E. TAP binds to the constitutive transport element (CTE) through a novel RNA-binding motif that is sufficient to promote CTE-dependent RNA export from the nucleus. EMBO J. 1999 Apr 1;18(7):1953–1965. doi: 10.1093/emboj/18.7.1953. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Brown J. A., Bharathi A., Ghosh A., Whalen W., Fitzgerald E., Dhar R. A mutation in the Schizosaccharomyces pombe rae1 gene causes defects in poly(A)+ RNA export and in the cytoskeleton. J Biol Chem. 1995 Mar 31;270(13):7411–7419. doi: 10.1074/jbc.270.13.7411. [DOI] [PubMed] [Google Scholar]
  8. Daneholt B. A look at messenger RNP moving through the nuclear pore. Cell. 1997 Mar 7;88(5):585–588. doi: 10.1016/s0092-8674(00)81900-5. [DOI] [PubMed] [Google Scholar]
  9. Doye V., Hurt E. From nucleoporins to nuclear pore complexes. Curr Opin Cell Biol. 1997 Jun;9(3):401–411. doi: 10.1016/s0955-0674(97)80014-2. [DOI] [PubMed] [Google Scholar]
  10. Fischer U., Huber J., Boelens W. C., Mattaj I. W., Lührmann R. The HIV-1 Rev activation domain is a nuclear export signal that accesses an export pathway used by specific cellular RNAs. Cell. 1995 Aug 11;82(3):475–483. doi: 10.1016/0092-8674(95)90436-0. [DOI] [PubMed] [Google Scholar]
  11. Fornerod M., Ohno M., Yoshida M., Mattaj I. W. CRM1 is an export receptor for leucine-rich nuclear export signals. Cell. 1997 Sep 19;90(6):1051–1060. doi: 10.1016/s0092-8674(00)80371-2. [DOI] [PubMed] [Google Scholar]
  12. Grüter P., Tabernero C., von Kobbe C., Schmitt C., Saavedra C., Bachi A., Wilm M., Felber B. K., Izaurralde E. TAP, the human homolog of Mex67p, mediates CTE-dependent RNA export from the nucleus. Mol Cell. 1998 Apr;1(5):649–659. doi: 10.1016/s1097-2765(00)80065-9. [DOI] [PubMed] [Google Scholar]
  13. Görlich D., Kutay U. Transport between the cell nucleus and the cytoplasm. Annu Rev Cell Dev Biol. 1999;15:607–660. doi: 10.1146/annurev.cellbio.15.1.607. [DOI] [PubMed] [Google Scholar]
  14. Katahira J., Strässer K., Podtelejnikov A., Mann M., Jung J. U., Hurt E. The Mex67p-mediated nuclear mRNA export pathway is conserved from yeast to human. EMBO J. 1999 May 4;18(9):2593–2609. doi: 10.1093/emboj/18.9.2593. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Kiseleva E., Goldberg M. W., Daneholt B., Allen T. D. RNP export is mediated by structural reorganization of the nuclear pore basket. J Mol Biol. 1996 Jul 19;260(3):304–311. doi: 10.1006/jmbi.1996.0401. [DOI] [PubMed] [Google Scholar]
  16. Kiseleva E., Visa N., Wurtz T., Daneholt B. Immunocytochemical evidence for a stepwise assembly of Balbiani ring premessenger ribonucleoprotein particles. Eur J Cell Biol. 1997 Dec;74(4):407–416. [PubMed] [Google Scholar]
  17. Kraemer D., Blobel G. mRNA binding protein mrnp 41 localizes to both nucleus and cytoplasm. Proc Natl Acad Sci U S A. 1997 Aug 19;94(17):9119–9124. doi: 10.1073/pnas.94.17.9119. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Krecic A. M., Swanson M. S. hnRNP complexes: composition, structure, and function. Curr Opin Cell Biol. 1999 Jun;11(3):363–371. doi: 10.1016/S0955-0674(99)80051-9. [DOI] [PubMed] [Google Scholar]
  19. Lezzi M., Meyer B., Mähr R. Heat shock phenomena in Chironomus tentans I. In vivo effects of heat, overheat, and quenching on salivary chromosome puffing. Chromosoma. 1981;83(3):327–339. doi: 10.1007/BF00327356. [DOI] [PubMed] [Google Scholar]
  20. Mattaj I. W., Englmeier L. Nucleocytoplasmic transport: the soluble phase. Annu Rev Biochem. 1998;67:265–306. doi: 10.1146/annurev.biochem.67.1.265. [DOI] [PubMed] [Google Scholar]
  21. Mehlin H., Daneholt B., Skoglund U. Structural interaction between the nuclear pore complex and a specific translocating RNP particle. J Cell Biol. 1995 Jun;129(5):1205–1216. doi: 10.1083/jcb.129.5.1205. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Mehlin H., Daneholt B. The Balbiani ring particle: a model for the assembly and export of RNPs from the nucleus? Trends Cell Biol. 1993 Dec;3(12):443–447. doi: 10.1016/0962-8924(93)90034-x. [DOI] [PubMed] [Google Scholar]
  23. Miralles F., Ofverstedt L. G., Sabri N., Aissouni Y., Hellman U., Skoglund U., Visa N. Electron tomography reveals posttranscriptional binding of pre-mRNPs to specific fibers in the nucleoplasm. J Cell Biol. 2000 Jan 24;148(2):271–282. doi: 10.1083/jcb.148.2.271. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Murphy R., Watkins J. L., Wente S. R. GLE2, a Saccharomyces cerevisiae homologue of the Schizosaccharomyces pombe export factor RAE1, is required for nuclear pore complex structure and function. Mol Biol Cell. 1996 Dec;7(12):1921–1937. doi: 10.1091/mbc.7.12.1921. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Murphy R., Wente S. R. An RNA-export mediator with an essential nuclear export signal. Nature. 1996 Sep 26;383(6598):357–360. doi: 10.1038/383357a0. [DOI] [PubMed] [Google Scholar]
  26. Nakielny S., Dreyfuss G. Transport of proteins and RNAs in and out of the nucleus. Cell. 1999 Dec 23;99(7):677–690. doi: 10.1016/s0092-8674(00)81666-9. [DOI] [PubMed] [Google Scholar]
  27. Pollard V. W., Malim M. H. The HIV-1 Rev protein. Annu Rev Microbiol. 1998;52:491–532. doi: 10.1146/annurev.micro.52.1.491. [DOI] [PubMed] [Google Scholar]
  28. Pritchard C. E., Fornerod M., Kasper L. H., van Deursen J. M. RAE1 is a shuttling mRNA export factor that binds to a GLEBS-like NUP98 motif at the nuclear pore complex through multiple domains. J Cell Biol. 1999 Apr 19;145(2):237–254. doi: 10.1083/jcb.145.2.237. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Schmitt C., von Kobbe C., Bachi A., Panté N., Rodrigues J. P., Boscheron C., Rigaut G., Wilm M., Séraphin B., Carmo-Fonseca M. Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p. EMBO J. 1999 Aug 2;18(15):4332–4347. doi: 10.1093/emboj/18.15.4332. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Segref A., Sharma K., Doye V., Hellwig A., Huber J., Lührmann R., Hurt E. Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores. EMBO J. 1997 Jun 2;16(11):3256–3271. doi: 10.1093/emboj/16.11.3256. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Singh O. P., Björkroth B., Masich S., Wieslander L., Daneholt B. The intranuclear movement of Balbiani ring premessenger ribonucleoprotein particles. Exp Cell Res. 1999 Aug 25;251(1):135–146. doi: 10.1006/excr.1999.4490. [DOI] [PubMed] [Google Scholar]
  32. Strahm Y., Fahrenkrog B., Zenklusen D., Rychner E., Kantor J., Rosbach M., Stutz F. The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p. EMBO J. 1999 Oct 15;18(20):5761–5777. doi: 10.1093/emboj/18.20.5761. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Strässer K., Hurt E. Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export. EMBO J. 2000 Feb 1;19(3):410–420. doi: 10.1093/emboj/19.3.410. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Stutz F., Bachi A., Doerks T., Braun I. C., Séraphin B., Wilm M., Bork P., Izaurralde E. REF, an evolutionary conserved family of hnRNP-like proteins, interacts with TAP/Mex67p and participates in mRNA nuclear export. RNA. 2000 Apr;6(4):638–650. doi: 10.1017/s1355838200000078. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Sun X., Alzhanova-Ericsson A. T., Visa N., Aissouni Y., Zhao J., Daneholt B. The hrp23 protein in the balbiani ring pre-mRNP particles is released just before or at the binding of the particles to the nuclear pore complex. J Cell Biol. 1998 Sep 7;142(5):1181–1193. doi: 10.1083/jcb.142.5.1181. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Tokuyasu K. T. Immunochemistry on ultrathin frozen sections. Histochem J. 1980 Jul;12(4):381–403. doi: 10.1007/BF01011956. [DOI] [PubMed] [Google Scholar]
  37. Visa N., Alzhanova-Ericsson A. T., Sun X., Kiseleva E., Björkroth B., Wurtz T., Daneholt B. A pre-mRNA-binding protein accompanies the RNA from the gene through the nuclear pores and into polysomes. Cell. 1996 Jan 26;84(2):253–264. doi: 10.1016/s0092-8674(00)80980-0. [DOI] [PubMed] [Google Scholar]
  38. Visa N., Izaurralde E., Ferreira J., Daneholt B., Mattaj I. W. A nuclear cap-binding complex binds Balbiani ring pre-mRNA cotranscriptionally and accompanies the ribonucleoprotein particle during nuclear export. J Cell Biol. 1996 Apr;133(1):5–14. doi: 10.1083/jcb.133.1.5. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Watkins J. L., Murphy R., Emtage J. L., Wente S. R. The human homologue of Saccharomyces cerevisiae Gle1p is required for poly(A)+ RNA export. Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6779–6784. doi: 10.1073/pnas.95.12.6779. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Wieslander L. The Balbiani ring multigene family: coding repetitive sequences and evolution of a tissue-specific cell function. Prog Nucleic Acid Res Mol Biol. 1994;48:275–313. doi: 10.1016/s0079-6603(08)60858-2. [DOI] [PubMed] [Google Scholar]
  41. Wurtz-T, Kiseleva E., Nacheva G., Alzhanova-Ericcson A., Rosén A., Daneholt B. Identification of two RNA-binding proteins in Balbiani ring premessenger ribonucleoprotein granules and presence of these proteins in specific subsets of heterogeneous nuclear ribonucleoprotein particles. Mol Cell Biol. 1996 Apr;16(4):1425–1435. doi: 10.1128/mcb.16.4.1425. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Wyss C. Chironomus tentans epithelial cell lines sensitive to ecdysteroids, juvenile hormone, insulin and heat shock. Exp Cell Res. 1982 Jun;139(2):309–319. doi: 10.1016/0014-4827(82)90255-5. [DOI] [PubMed] [Google Scholar]

Articles from RNA are provided here courtesy of The RNA Society

RESOURCES