Abstract
Gaucher disease (GD) is one of the most prevalent lysosomal storage disorders and one of the rare genetic diseases now accessible to therapy. Outside the Ashkenazi Jewish community, a high molecular diversity is observed, leaving approximately 30% of alleles undetected. Nevertheless, very few exhaustive methods have been developed for extensive gene screening of a large series of patients. Our approach for a complete search of mutations was the association of fluorescent chemical cleavage of mismatches with a universal strand-specific labeling system. The glucocerebrosidase (GBA) gene was scanned by use of a set of six amplicons, comprising 11 exons, all exon/intron boundaries, and the promoter region. By use of this screening strategy, the difficulties due to the existence of a highly homologous pseudogene were easily overcome, and both GD mutant alleles were identified in all 25 patients studied, thus attesting to a sensitivity that approaches 100%. A total of 18 different mutations and a new glucocerebrosidase haplotype were detected. The mutational spectrum included eight novel acid beta-glucosidase mutations: IVS2 G(+1)-->T, I119T, R170P, N188K, S237P, K303I, L324P, and A446P. These data further indicate the genetic heterogeneity of the lesions causing GD. Established genotype/phenotype correlations generally were confirmed, but notable disparities were disclosed in several cases, thus underlining the limitation in the prognostic value of genotyping. The observed influence of multifactorial control on this monogenic disease is discussed.
Full Text
The Full Text of this article is available as a PDF (764.9 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Abrahamov A., Elstein D., Gross-Tsur V., Farber B., Glaser Y., Hadas-Halpern I., Ronen S., Tafakjdi M., Horowitz M., Zimran A. Gaucher's disease variant characterised by progressive calcification of heart valves and unique genotype. Lancet. 1995 Oct 14;346(8981):1000–1003. doi: 10.1016/s0140-6736(95)91688-1. [DOI] [PubMed] [Google Scholar]
- Amaral O., Fortuna A. M., Lacerda L., Pinto R., Sa Miranda M. C. Molecular characterisation of type 1 Gaucher disease families and patients: intrafamilial heterogeneity at the clinical level. J Med Genet. 1994 May;31(5):401–404. doi: 10.1136/jmg.31.5.401. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Beutler E., Gelbart T. Gaucher disease mutations in non-Jewish patients. Br J Haematol. 1993 Oct;85(2):401–405. doi: 10.1111/j.1365-2141.1993.tb03185.x. [DOI] [PubMed] [Google Scholar]
- Beutler E., Nguyen N. J., Henneberger M. W., Smolec J. M., McPherson R. A., West C., Gelbart T. Gaucher disease: gene frequencies in the Ashkenazi Jewish population. Am J Hum Genet. 1993 Jan;52(1):85–88. [PMC free article] [PubMed] [Google Scholar]
- Beutler E., West C., Gelbart T. Polymorphisms in the human glucocerebrosidase gene. Genomics. 1992 Apr;12(4):795–800. doi: 10.1016/0888-7543(92)90311-f. [DOI] [PubMed] [Google Scholar]
- Boot R. G., Hollak C. E., Verhoek M., Sloof P., Poorthuis B. J., Kleijer W. J., Wevers R. A., van Oers M. H., Mannens M. M., Aerts J. M. Glucocerebrosidase genotype of Gaucher patients in The Netherlands: limitations in prognostic value. Hum Mutat. 1997;10(5):348–358. doi: 10.1002/(SICI)1098-1004(1997)10:5<348::AID-HUMU3>3.0.CO;2-B. [DOI] [PubMed] [Google Scholar]
- Brady R. O., Barton N. W., Grabowski G. A. The role of neurogenetics in Gaucher disease. Arch Neurol. 1993 Nov;50(11):1212–1224. doi: 10.1001/archneur.1993.00540110088009. [DOI] [PubMed] [Google Scholar]
- Choy F. Y., Humphries M. L., Shi H. Identification of two novel and four uncommon missense mutations among chinese Gaucher disease patients. Am J Med Genet. 1997 Aug 8;71(2):172–178. doi: 10.1002/(sici)1096-8628(19970808)71:2<172::aid-ajmg10>3.0.co;2-b. [DOI] [PubMed] [Google Scholar]
- Cormand B., Vilageliu L., Burguera J. M., Balcells S., Gonzàlez-Duarte R., Grinberg D., Chabás A. Gaucher disease in Spanish patients: analysis of eight mutations. Hum Mutat. 1995;5(4):303–309. doi: 10.1002/humu.1380050406. [DOI] [PubMed] [Google Scholar]
- Cotton R. G., Rodrigues N. R., Campbell R. D. Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations. Proc Natl Acad Sci U S A. 1988 Jun;85(12):4397–4401. doi: 10.1073/pnas.85.12.4397. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cotton R. G. Slowly but surely towards better scanning for mutations. Trends Genet. 1997 Feb;13(2):43–46. doi: 10.1016/s0168-9525(97)01011-1. [DOI] [PubMed] [Google Scholar]
- Cuppens H., Lin W., Jaspers M., Costes B., Teng H., Vankeerberghen A., Jorissen M., Droogmans G., Reynaert I., Goossens M. Polyvariant mutant cystic fibrosis transmembrane conductance regulator genes. The polymorphic (Tg)m locus explains the partial penetrance of the T5 polymorphism as a disease mutation. J Clin Invest. 1998 Jan 15;101(2):487–496. doi: 10.1172/JCI639. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Daniels L. B., Glew R. H. beta-Glucosidase assays in the diagnosis of Gaucher's disease. Clin Chem. 1982 Apr;28(4 Pt 1):569–577. [PubMed] [Google Scholar]
- Dianzani I., Forrest S. M., Camaschella C., Gottardi E., Cotton R. G. Heterozygotes and homozygotes: discrimination by chemical cleavage of mismatch. Am J Hum Genet. 1991 Feb;48(2):423–424. [PMC free article] [PubMed] [Google Scholar]
- Durand P., Lehn P., Callebaut I., Fabrega S., Henrissat B., Mornon J. P. Active-site motifs of lysosomal acid hydrolases: invariant features of clan GH-A glycosyl hydrolases deduced from hydrophobic cluster analysis. Glycobiology. 1997 Mar;7(2):277–284. doi: 10.1093/glycob/7.2.277. [DOI] [PubMed] [Google Scholar]
- Férec C., Audrezet M. P., Mercier B., Guillermit H., Moullier P., Quere I., Verlingue C. Detection of over 98% cystic fibrosis mutations in a Celtic population. Nat Genet. 1992 Jun;1(3):188–191. doi: 10.1038/ng0692-188. [DOI] [PubMed] [Google Scholar]
- Germain D., Biasotto M., Tosi M., Meo T., Kahn A., Poenaru L. Fluorescence-assisted mismatch analysis (FAMA) for exhaustive screening of the alpha-galactosidase A gene and detection of carriers in Fabry disease. Hum Genet. 1996 Dec;98(6):719–726. doi: 10.1007/s004390050292. [DOI] [PubMed] [Google Scholar]
- Grabowski G. A., Saal H. M., Wenstrup R. J., Barton N. W. Gaucher disease: a prototype for molecular medicine. Crit Rev Oncol Hematol. 1996 May;23(1):25–55. doi: 10.1016/1040-8428(96)00199-0. [DOI] [PubMed] [Google Scholar]
- Grace M. E., Desnick R. J., Pastores G. M. Identification and expression of acid beta-glucosidase mutations causing severe type 1 and neurologic type 2 Gaucher disease in non-Jewish patients. J Clin Invest. 1997 May 15;99(10):2530–2537. doi: 10.1172/JCI119437. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Griffais R., André P. M., Thibon M. K-tuple frequency in the human genome and polymerase chain reaction. Nucleic Acids Res. 1991 Jul 25;19(14):3887–3891. doi: 10.1093/nar/19.14.3887. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Grompe M. The rapid detection of unknown mutations in nucleic acids. Nat Genet. 1993 Oct;5(2):111–117. doi: 10.1038/ng1093-111. [DOI] [PubMed] [Google Scholar]
- He G. S., Grabowski G. A. Gaucher disease: A G+1----A+1 IVS2 splice donor site mutation causing exon 2 skipping in the acid beta-glucosidase mRNA. Am J Hum Genet. 1992 Oct;51(4):810–820. [PMC free article] [PubMed] [Google Scholar]
- Henrissat B., Callebaut I., Fabrega S., Lehn P., Mornon J. P., Davies G. Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases. Proc Natl Acad Sci U S A. 1995 Jul 18;92(15):7090–7094. doi: 10.1073/pnas.92.15.7090. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Horowitz M., Tzuri G., Eyal N., Berebi A., Kolodny E. H., Brady R. O., Barton N. W., Abrahamov A., Zimran A. Prevalence of nine mutations among Jewish and non-Jewish Gaucher disease patients. Am J Hum Genet. 1993 Oct;53(4):921–930. [PMC free article] [PubMed] [Google Scholar]
- Horowitz M., Wilder S., Horowitz Z., Reiner O., Gelbart T., Beutler E. The human glucocerebrosidase gene and pseudogene: structure and evolution. Genomics. 1989 Jan;4(1):87–96. doi: 10.1016/0888-7543(89)90319-4. [DOI] [PubMed] [Google Scholar]
- Ida H., Iwasawa K., Kawame H., Rennert O. M., Maekawa K., Eto Y. Characteristics of gene mutations among 32 unrelated Japanese Gaucher disease patients: absence of the common Jewish 84GG and 1226G mutations. Hum Genet. 1995 Jun;95(6):717–720. doi: 10.1007/BF00209497. [DOI] [PubMed] [Google Scholar]
- Kiesewetter S., Macek M., Jr, Davis C., Curristin S. M., Chu C. S., Graham C., Shrimpton A. E., Cashman S. M., Tsui L. C., Mickle J. A mutation in CFTR produces different phenotypes depending on chromosomal background. Nat Genet. 1993 Nov;5(3):274–278. doi: 10.1038/ng1193-274. [DOI] [PubMed] [Google Scholar]
- Kwok P. Y., Carlson C., Yager T. D., Ankener W., Nickerson D. A. Comparative analysis of human DNA variations by fluorescence-based sequencing of PCR products. Genomics. 1994 Sep 1;23(1):138–144. doi: 10.1006/geno.1994.1469. [DOI] [PubMed] [Google Scholar]
- Latham T. E., Theophilus B. D., Grabowski G. A., Smith F. I. Heterogeneity of mutations in the acid beta-glucosidase gene of Gaucher disease patients. DNA Cell Biol. 1991 Jan-Feb;10(1):15–21. doi: 10.1089/dna.1991.10.15. [DOI] [PubMed] [Google Scholar]
- Latham T., Grabowski G. A., Theophilus B. D., Smith F. I. Complex alleles of the acid beta-glucosidase gene in Gaucher disease. Am J Hum Genet. 1990 Jul;47(1):79–86. [PMC free article] [PubMed] [Google Scholar]
- Miao S., McCarter J. D., Grace M. E., Grabowski G. A., Aebersold R., Withers S. G. Identification of Glu340 as the active-site nucleophile in human glucocerebrosidase by use of electrospray tandem mass spectrometry. J Biol Chem. 1994 Apr 15;269(15):10975–10978. [PubMed] [Google Scholar]
- Moran D., Galperin E., Horowitz M. Identification of factors regulating the expression of the human glucocerebrosidase gene. Gene. 1997 Jul 31;194(2):201–213. doi: 10.1016/s0378-1119(97)00148-0. [DOI] [PubMed] [Google Scholar]
- O'Neill R. R., Tokoro T., Kozak C. A., Brady R. O. Comparison of the chromosomal localization of murine and human glucocerebrosidase genes and of the deduced amino acid sequences. Proc Natl Acad Sci U S A. 1989 Jul;86(13):5049–5053. doi: 10.1073/pnas.86.13.5049. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pasmanik-Chor M., Madar-Shapiro L., Stein E. O., Aerts H., Gatt S., Horowitz M. Expression of mutated glucocerebrosidase alleles in human cells. Hum Mol Genet. 1997 Jun;6(6):887–895. doi: 10.1093/hmg/6.6.887. [DOI] [PubMed] [Google Scholar]
- Phelps R. S., Chadwick R. B., Conrad M. P., Kronick M. N., Kamb A. Efficient, automatic detection of heterozygous bases during large-scale DNA sequence screening. Biotechniques. 1995 Dec;19(6):984–989. [PubMed] [Google Scholar]
- Rowley G., Saad S., Giannelli F., Green P. M. Ultrarapid mutation detection by multiplex, solid-phase chemical cleavage. Genomics. 1995 Dec 10;30(3):574–582. doi: 10.1006/geno.1995.1279. [DOI] [PubMed] [Google Scholar]
- Rozmahel R., Wilschanski M., Matin A., Plyte S., Oliver M., Auerbach W., Moore A., Forstner J., Durie P., Nadeau J. Modulation of disease severity in cystic fibrosis transmembrane conductance regulator deficient mice by a secondary genetic factor. Nat Genet. 1996 Mar;12(3):280–287. doi: 10.1038/ng0396-280. [DOI] [PubMed] [Google Scholar]
- Rutland P., Pulleyn L. J., Reardon W., Baraitser M., Hayward R., Jones B., Malcolm S., Winter R. M., Oldridge M., Slaney S. F. Identical mutations in the FGFR2 gene cause both Pfeiffer and Crouzon syndrome phenotypes. Nat Genet. 1995 Feb;9(2):173–176. doi: 10.1038/ng0295-173. [DOI] [PubMed] [Google Scholar]
- Savov A., Angelicheva D., Balassopoulou A., Jordanova A., Noussia-Arvanitakis S., Kalaydjieva L. Double mutant alleles: are they rare? Hum Mol Genet. 1995 Jul;4(7):1169–1171. doi: 10.1093/hmg/4.7.1169. [DOI] [PubMed] [Google Scholar]
- Serjeant G. R. Sickle-cell disease. Lancet. 1997 Sep 6;350(9079):725–730. doi: 10.1016/S0140-6736(97)07330-3. [DOI] [PubMed] [Google Scholar]
- Sibille A., Eng C. M., Kim S. J., Pastores G., Grabowski G. A. Phenotype/genotype correlations in Gaucher disease type I: clinical and therapeutic implications. Am J Hum Genet. 1993 Jun;52(6):1094–1101. [PMC free article] [PubMed] [Google Scholar]
- Sidransky E., Ginns E. I. Clinical heterogeneity among patients with Gaucher's disease. JAMA. 1993 Mar 3;269(9):1154–1157. [PubMed] [Google Scholar]
- Sorge J., West C., Westwood B., Beutler E. Molecular cloning and nucleotide sequence of human glucocerebrosidase cDNA. Proc Natl Acad Sci U S A. 1985 Nov;82(21):7289–7293. doi: 10.1073/pnas.82.21.7289. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tayebi N., Cushner S., Sidransky E. Differentiation of the glucocerebrosidase gene from pseudogene by long-template PCR: implications for Gaucher disease. Am J Hum Genet. 1996 Sep;59(3):740–741. [PMC free article] [PubMed] [Google Scholar]
- Verpy E., Biasotto M., Brai M., Misiano G., Meo T., Tosi M. Exhaustive mutation scanning by fluorescence-assisted mismatch analysis discloses new genotype-phenotype correlations in angiodema. Am J Hum Genet. 1996 Aug;59(2):308–319. [PMC free article] [PubMed] [Google Scholar]
- Verpy E., Biasotto M., Meo T., Tosi M. Efficient detection of point mutations on color-coded strands of target DNA. Proc Natl Acad Sci U S A. 1994 Mar 1;91(5):1873–1877. doi: 10.1073/pnas.91.5.1873. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Winfield S. L., Tayebi N., Martin B. M., Ginns E. I., Sidransky E. Identification of three additional genes contiguous to the glucocerebrosidase locus on chromosome 1q21: implications for Gaucher disease. Genome Res. 1997 Oct;7(10):1020–1026. doi: 10.1101/gr.7.10.1020. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wolf U. Identical mutations and phenotypic variation. Hum Genet. 1997 Sep;100(3-4):305–321. doi: 10.1007/s004390050509. [DOI] [PubMed] [Google Scholar]
- Zimran A., Elstein D., Abrahamov A., Kuhl W., Brown K. H., Beutler E. Prenatal molecular diagnosis of Gaucher disease. Prenat Diagn. 1995 Dec;15(12):1185–1188. doi: 10.1002/pd.1970151219. [DOI] [PubMed] [Google Scholar]
- le Coutre P., Demina A., Beutler E., Beck M., Petrides P. E. Molecular analysis of Gaucher disease: distribution of eight mutations and the complete gene deletion in 27 patients from Germany. Hum Genet. 1997 Jun;99(6):816–821. doi: 10.1007/s004390050454. [DOI] [PubMed] [Google Scholar]