Abstract
Limb-girdle muscular dystrophy type 2A (LGMD2A) is an autosomal recessive disorder characterized mainly by symmetrical and selective atrophy of the proximal limb muscles. It derives from defects in the human CAPN3 gene, which encodes the skeletal muscle-specific member of the calpain family. This report represents a compilation of the mutations and variants identified so far in this gene. To date, 97 distinct pathogenic calpain 3 mutations have been identified (4 nonsense mutations, 32 deletions/insertions, 8 splice-site mutations, and 53 missense mutations), 56 of which have not been described previously, together with 12 polymorphisms and 5 nonclassified variants. The mutations are distributed along the entire length of the CAPN3 gene. Thus far, most mutations identified represent private variants, although particular mutations have been found more frequently. Knowledge of the mutation spectrum occurring in the CAPN3 gene may contribute significantly to structure/function and pathogenesis studies. It may also help in the design of efficient mutation-screening strategies for calpainopathies.
Full Text
The Full Text of this article is available as a PDF (340.9 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Allamand V., Broux O., Richard I., Fougerousse F., Chiannilkulchai N., Bourg N., Brenguier L., Devaud C., Pasturaud P., Pereira de Souza A. Preferential localization of the limb-girdle muscular dystrophy type 2A gene in the proximal part of a 1-cM 15q15.1-q15.3 interval. Am J Hum Genet. 1995 Jun;56(6):1417–1430. [PMC free article] [PubMed] [Google Scholar]
- Anderson L. V., Davison K., Moss J. A., Richard I., Fardeau M., Tomé F. M., Hübner C., Lasa A., Colomer J., Beckmann J. S. Characterization of monoclonal antibodies to calpain 3 and protein expression in muscle from patients with limb-girdle muscular dystrophy type 2A. Am J Pathol. 1998 Oct;153(4):1169–1179. doi: 10.1016/S0002-9440(10)65661-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Antonarakis S. E. Recommendations for a nomenclature system for human gene mutations. Nomenclature Working Group. Hum Mutat. 1998;11(1):1–3. doi: 10.1002/(SICI)1098-1004(1998)11:1<1::AID-HUMU1>3.0.CO;2-O. [DOI] [PubMed] [Google Scholar]
- Bashir R., Britton S., Strachan T., Keers S., Vafiadaki E., Lako M., Richard I., Marchand S., Bourg N., Argov Z. A gene related to Caenorhabditis elegans spermatogenesis factor fer-1 is mutated in limb-girdle muscular dystrophy type 2B. Nat Genet. 1998 Sep;20(1):37–42. doi: 10.1038/1689. [DOI] [PubMed] [Google Scholar]
- Bashir R., Strachan T., Keers S., Stephenson A., Mahjneh I., Marconi G., Nashef L., Bushby K. M. A gene for autosomal recessive limb-girdle muscular dystrophy maps to chromosome 2p. Hum Mol Genet. 1994 Mar;3(3):455–457. doi: 10.1093/hmg/3.3.455. [DOI] [PubMed] [Google Scholar]
- Beckmann J. S., Richard I., Hillaire D., Broux O., Antignac C., Bois E., Cann H., Cottingham R. W., Jr, Feingold N., Feingold J. A gene for limb-girdle muscular dystrophy maps to chromosome 15 by linkage. C R Acad Sci III. 1991;312(4):141–148. [PubMed] [Google Scholar]
- Bönnemann C. G., Modi R., Noguchi S., Mizuno Y., Yoshida M., Gussoni E., McNally E. M., Duggan D. J., Angelini C., Hoffman E. P. Beta-sarcoglycan (A3b) mutations cause autosomal recessive muscular dystrophy with loss of the sarcoglycan complex. Nat Genet. 1995 Nov;11(3):266–273. doi: 10.1038/ng1195-266. [DOI] [PubMed] [Google Scholar]
- Campbell K. P. Three muscular dystrophies: loss of cytoskeleton-extracellular matrix linkage. Cell. 1995 Mar 10;80(5):675–679. doi: 10.1016/0092-8674(95)90344-5. [DOI] [PubMed] [Google Scholar]
- Chiannilkulchai N., Pasturaud P., Richard I., Auffray C., Beckmann J. S. A primary expression map of the chromosome 15q15 region containing the recessive form of limb-girdle muscular dystrophy (LGMD2A) gene. Hum Mol Genet. 1995 Apr;4(4):717–725. doi: 10.1093/hmg/4.4.717. [DOI] [PubMed] [Google Scholar]
- Dinçer P., Leturcq F., Richard I., Piccolo F., Yalnizoglu D., de Toma C., Akçren Z., Broux O., Deburgrave N., Brenguier L. A biochemical, genetic, and clinical survey of autosomal recessive limb girdle muscular dystrophies in Turkey. Ann Neurol. 1997 Aug;42(2):222–229. doi: 10.1002/ana.410420214. [DOI] [PubMed] [Google Scholar]
- Eymard B., Romero N. B., Leturcq F., Piccolo F., Carrié A., Jeanpierre M., Collin H., Deburgrave N., Azibi K., Chaouch M. Primary adhalinopathy (alpha-sarcoglycanopathy): clinical, pathologic, and genetic correlation in 20 patients with autosomal recessive muscular dystrophy. Neurology. 1997 May;48(5):1227–1234. doi: 10.1212/wnl.48.5.1227. [DOI] [PubMed] [Google Scholar]
- Fardeau M., Eymard B., Mignard C., Tomé F. M., Richard I., Beckmann J. S. Chromosome 15-linked limb-girdle muscular dystrophy: clinical phenotypes in Reunion Island and French metropolitan communities. Neuromuscul Disord. 1996 Dec;6(6):447–453. doi: 10.1016/s0960-8966(96)00387-2. [DOI] [PubMed] [Google Scholar]
- Fardeau M., Hillaire D., Mignard C., Feingold N., Feingold J., Mignard D., de Ubeda B., Collin H., Tome F. M., Richard I. Juvenile limb-girdle muscular dystrophy. Clinical, histopathological and genetic data from a small community living in the Reunion Island. Brain. 1996 Feb;119(Pt 1):295–308. doi: 10.1093/brain/119.1.295. [DOI] [PubMed] [Google Scholar]
- Fougerousse F., Broux O., Richard I., Allamand V., de Souza A. P., Bourg N., Brenguier L., Devaud C., Pasturaud P., Roudaut C. Mapping of a chromosome 15 region involved in limb girdle muscular dystrophy. Hum Mol Genet. 1994 Feb;3(2):285–293. doi: 10.1093/hmg/3.2.285. [DOI] [PubMed] [Google Scholar]
- Häffner K., Speer A., Hübner C., Voit T., Oexle K. A small in-frame deletion within the protease domain of muscle-specific calpain, p94 causes early-onset limb-girdle muscular dystrophy 2A. Hum Mutat. 1998;Suppl 1:S298–S300. doi: 10.1002/humu.1380110193. [DOI] [PubMed] [Google Scholar]
- Kawai H., Akaike M., Kunishige M., Inui T., Adachi K., Kimura C., Kawajiri M., Nishida Y., Endo I., Kashiwagi S. Clinical, pathological, and genetic features of limb-girdle muscular dystrophy type 2A with new calpain 3 gene mutations in seven patients from three Japanese families. Muscle Nerve. 1998 Nov;21(11):1493–1501. doi: 10.1002/(sici)1097-4598(199811)21:11<1493::aid-mus19>3.0.co;2-1. [DOI] [PubMed] [Google Scholar]
- Lim L. E., Duclos F., Broux O., Bourg N., Sunada Y., Allamand V., Meyer J., Richard I., Moomaw C., Slaughter C. Beta-sarcoglycan: characterization and role in limb-girdle muscular dystrophy linked to 4q12. Nat Genet. 1995 Nov;11(3):257–265. doi: 10.1038/ng1195-257. [DOI] [PubMed] [Google Scholar]
- Liu J., Aoki M., Illa I., Wu C., Fardeau M., Angelini C., Serrano C., Urtizberea J. A., Hentati F., Hamida M. B. Dysferlin, a novel skeletal muscle gene, is mutated in Miyoshi myopathy and limb girdle muscular dystrophy. Nat Genet. 1998 Sep;20(1):31–36. doi: 10.1038/1682. [DOI] [PubMed] [Google Scholar]
- Ma H., Fukiage C., Azuma M., Shearer T. R. Cloning and expression of mRNA for calpain Lp82 from rat lens: splice variant of p94. Invest Ophthalmol Vis Sci. 1998 Feb;39(2):454–461. [PubMed] [Google Scholar]
- Ma H., Shih M., Hata I., Fukiage C., Azuma M., Shearer T. R. Protein for Lp82 calpain is expressed and enzymatically active in young rat lens. Exp Eye Res. 1998 Aug;67(2):221–229. doi: 10.1006/exer.1998.0515. [DOI] [PubMed] [Google Scholar]
- Moreira E. S., Vainzof M., Marie S. K., Sertié A. L., Zatz M., Passos-Bueno M. R. The seventh form of autosomal recessive limb-girdle muscular dystrophy is mapped to 17q11-12. Am J Hum Genet. 1997 Jul;61(1):151–159. doi: 10.1086/513889. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nigro V., de Sá Moreira E., Piluso G., Vainzof M., Belsito A., Politano L., Puca A. A., Passos-Bueno M. R., Zatz M. Autosomal recessive limb-girdle muscular dystrophy, LGMD2F, is caused by a mutation in the delta-sarcoglycan gene. Nat Genet. 1996 Oct;14(2):195–198. doi: 10.1038/ng1096-195. [DOI] [PubMed] [Google Scholar]
- Noguchi S., McNally E. M., Ben Othmane K., Hagiwara Y., Mizuno Y., Yoshida M., Yamamoto H., Bönnemann C. G., Gussoni E., Denton P. H. Mutations in the dystrophin-associated protein gamma-sarcoglycan in chromosome 13 muscular dystrophy. Science. 1995 Nov 3;270(5237):819–822. doi: 10.1126/science.270.5237.819. [DOI] [PubMed] [Google Scholar]
- Ono Y., Shimada H., Sorimachi H., Richard I., Saido T. C., Beckmann J. S., Ishiura S., Suzuki K. Functional defects of a muscle-specific calpain, p94, caused by mutations associated with limb-girdle muscular dystrophy type 2A. J Biol Chem. 1998 Jul 3;273(27):17073–17078. doi: 10.1074/jbc.273.27.17073. [DOI] [PubMed] [Google Scholar]
- Pénisson-Besnier I., Richard I., Dubas F., Beckmann J. S., Fardeau M. Pseudometabolic expression and phenotypic variability of calpain deficiency in two siblings. Muscle Nerve. 1998 Aug;21(8):1078–1080. doi: 10.1002/(sici)1097-4598(199808)21:8<1078::aid-mus15>3.0.co;2-q. [DOI] [PubMed] [Google Scholar]
- Richard I., Beckmann J. S. How neutral are synonymous codon mutations? Nat Genet. 1995 Jul;10(3):259–259. doi: 10.1038/ng0795-259. [DOI] [PubMed] [Google Scholar]
- Richard I., Brenguier L., Dinçer P., Roudaut C., Bady B., Burgunder J. M., Chemaly R., Garcia C. A., Halaby G., Jackson C. E. Multiple independent molecular etiology for limb-girdle muscular dystrophy type 2A patients from various geographical origins. Am J Hum Genet. 1997 May;60(5):1128–1138. [PMC free article] [PubMed] [Google Scholar]
- Richard I., Broux O., Allamand V., Fougerousse F., Chiannilkulchai N., Bourg N., Brenguier L., Devaud C., Pasturaud P., Roudaut C. Mutations in the proteolytic enzyme calpain 3 cause limb-girdle muscular dystrophy type 2A. Cell. 1995 Apr 7;81(1):27–40. doi: 10.1016/0092-8674(95)90368-2. [DOI] [PubMed] [Google Scholar]
- Robberson B. L., Cote G. J., Berget S. M. Exon definition may facilitate splice site selection in RNAs with multiple exons. Mol Cell Biol. 1990 Jan;10(1):84–94. doi: 10.1128/mcb.10.1.84. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roberds S. L., Leturcq F., Allamand V., Piccolo F., Jeanpierre M., Anderson R. D., Lim L. E., Lee J. C., Tomé F. M., Romero N. B. Missense mutations in the adhalin gene linked to autosomal recessive muscular dystrophy. Cell. 1994 Aug 26;78(4):625–633. doi: 10.1016/0092-8674(94)90527-4. [DOI] [PubMed] [Google Scholar]
- Shapiro M. B., Senapathy P. RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression. Nucleic Acids Res. 1987 Sep 11;15(17):7155–7174. doi: 10.1093/nar/15.17.7155. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Smith C. W., Porro E. B., Patton J. G., Nadal-Ginard B. Scanning from an independently specified branch point defines the 3' splice site of mammalian introns. Nature. 1989 Nov 16;342(6247):243–247. doi: 10.1038/342243a0. [DOI] [PubMed] [Google Scholar]
- Sorimachi H., Imajoh-Ohmi S., Emori Y., Kawasaki H., Ohno S., Minami Y., Suzuki K. Molecular cloning of a novel mammalian calcium-dependent protease distinct from both m- and mu-types. Specific expression of the mRNA in skeletal muscle. J Biol Chem. 1989 Nov 25;264(33):20106–20111. [PubMed] [Google Scholar]
- Topaloğlu H., Dinçer P., Richard I., Akçren Z., Alehan D., Ozme S., Cağlar M., Karaduman A., Urtizberea J. A., Beckmann J. S. Calpain-3 deficiency causes a mild muscular dystrophy in childhood. Neuropediatrics. 1997 Aug;28(4):212–216. doi: 10.1055/s-2007-973702. [DOI] [PubMed] [Google Scholar]
- Urtasun M., Sáenz A., Roudaut C., Poza J. J., Urtizberea J. A., Cobo A. M., Richard I., García Bragado F., Leturcq F., Kaplan J. C. Limb-girdle muscular dystrophy in Guipúzcoa (Basque Country, Spain). Brain. 1998 Sep;121(Pt 9):1735–1747. doi: 10.1093/brain/121.9.1735. [DOI] [PubMed] [Google Scholar]
- Weiler T., Greenberg C. R., Zelinski T., Nylen E., Coghlan G., Crumley M. J., Fujiwara T. M., Morgan K., Wrogemann K. A gene for autosomal recessive limb-girdle muscular dystrophy in Manitoba Hutterites maps to chromosome region 9q31-q33: evidence for another limb-girdle muscular dystrophy locus. Am J Hum Genet. 1998 Jul;63(1):140–147. doi: 10.1086/301925. [DOI] [PMC free article] [PubMed] [Google Scholar]