Abstract
The peroxisome-biogenesis disorders (PBDs) are a genetically and phenotypically diverse group of diseases caused by defects in peroxisome assembly. One of the milder clinical variants within the PBDs is neonatal adrenoleukodystrophy (NALD), a disease that is usually associated with partial defects in the import of peroxisomal matrix proteins that carry the type 1 or type 2 peroxisomal targeting signals. Here, we characterize the sole representative of complementation group 13 of the PBDs, a patient with NALD (patient PBD222). Skin fibroblasts from patient PBD222 display defects in the import of multiple peroxisomal matrix proteins. However, residual matrix-protein import can be detected in cells from patient PBD222, consistent with the relatively mild phenotypes of the patient. PEX13 encodes a peroxisomal membrane protein with a cytoplasmically exposed SH3 domain, and we find that expression of human PEX13 restores peroxisomal matrix-protein import in cells from patient PBD222. Furthermore, these cells are homozygous for a missense mutation at a conserved position in the PEX13 SH3 domain. This mutation attenuated the activity of human PEX13, and an analogous mutation in yeast PEX13 also reduced its activity. The mutation was absent in >100 control alleles, indicating that it is not a common polymorphism. Previous studies have demonstrated extragenic suppression in the PBDs, but the phenotypes of patient PBD222 cells could not be rescued by expression of any other human PEX genes. Taken together, these results provide strong evidence that mutations in PEX13 are responsible for disease in patient PBD222 and, by extension, in complementation group 13 of the PBDs.
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- Albertini M., Rehling P., Erdmann R., Girzalsky W., Kiel J. A., Veenhuis M., Kunau W. H. Pex14p, a peroxisomal membrane protein binding both receptors of the two PTS-dependent import pathways. Cell. 1997 Apr 4;89(1):83–92. doi: 10.1016/s0092-8674(00)80185-3. [DOI] [PubMed] [Google Scholar]
- Bell G. I., Najarian R. C., Mullenbach G. T., Hallewell R. A. cDNA sequence coding for human kidney catalase. Nucleic Acids Res. 1986 Jul 11;14(13):5561–5562. [PMC free article] [PubMed] [Google Scholar]
- Björkman J., Stetten G., Moore C. S., Gould S. J., Crane D. I. Genomic structure of PEX13, a candidate peroxisome biogenesis disorder gene. Genomics. 1998 Dec 15;54(3):521–528. doi: 10.1006/geno.1998.5520. [DOI] [PubMed] [Google Scholar]
- Braun A., Kammerer S., Weissenhorn W., Weiss E. H., Cleve H. Sequence of a putative human housekeeping gene (HK33) localized on chromosome 1. Gene. 1994 Sep 2;146(2):291–295. doi: 10.1016/0378-1119(94)90308-5. [DOI] [PubMed] [Google Scholar]
- Braverman N., Steel G., Obie C., Moser A., Moser H., Gould S. J., Valle D. Human PEX7 encodes the peroxisomal PTS2 receptor and is responsible for rhizomelic chondrodysplasia punctata. Nat Genet. 1997 Apr;15(4):369–376. doi: 10.1038/ng0497-369. [DOI] [PubMed] [Google Scholar]
- Chang C. C., Gould S. J. Phenotype-genotype relationships in complementation group 3 of the peroxisome-biogenesis disorders. Am J Hum Genet. 1998 Nov;63(5):1294–1306. doi: 10.1086/302103. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chang C. C., Lee W. H., Moser H., Valle D., Gould S. J. Isolation of the human PEX12 gene, mutated in group 3 of the peroxisome biogenesis disorders. Nat Genet. 1997 Apr;15(4):385–388. doi: 10.1038/ng0497-385. [DOI] [PubMed] [Google Scholar]
- Chang C. C., South S., Warren D., Jones J., Moser A. B., Moser H. W., Gould S. J. Metabolic control of peroxisome abundance. J Cell Sci. 1999 May;112(Pt 10):1579–1590. doi: 10.1242/jcs.112.10.1579. [DOI] [PubMed] [Google Scholar]
- Collins C. S., Gould S. J. Identification of a common PEX1 mutation in Zellweger syndrome. Hum Mutat. 1999;14(1):45–53. doi: 10.1002/(SICI)1098-1004(1999)14:1<45::AID-HUMU6>3.0.CO;2-J. [DOI] [PubMed] [Google Scholar]
- Crane D. I., Gould S. J. The Pichia pastoris HIS4 gene: nucleotide sequence, creation of a non-reverting his4 deletion mutant, and development of HIS4-based replicating and integrating plasmids. Curr Genet. 1994 Nov-Dec;26(5-6):443–450. doi: 10.1007/BF00309932. [DOI] [PubMed] [Google Scholar]
- Crane D. I., Kalish J. E., Gould S. J. The Pichia pastoris PAS4 gene encodes a ubiquitin-conjugating enzyme required for peroxisome assembly. J Biol Chem. 1994 Aug 26;269(34):21835–21844. [PubMed] [Google Scholar]
- Dodt G., Braverman N., Wong C., Moser A., Moser H. W., Watkins P., Valle D., Gould S. J. Mutations in the PTS1 receptor gene, PXR1, define complementation group 2 of the peroxisome biogenesis disorders. Nat Genet. 1995 Feb;9(2):115–125. doi: 10.1038/ng0295-115. [DOI] [PubMed] [Google Scholar]
- Dodt G., Gould S. J. Multiple PEX genes are required for proper subcellular distribution and stability of Pex5p, the PTS1 receptor: evidence that PTS1 protein import is mediated by a cycling receptor. J Cell Biol. 1996 Dec;135(6 Pt 2):1763–1774. doi: 10.1083/jcb.135.6.1763. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Elgersma Y., Kwast L., Klein A., Voorn-Brouwer T., van den Berg M., Metzig B., America T., Tabak H. F., Distel B. The SH3 domain of the Saccharomyces cerevisiae peroxisomal membrane protein Pex13p functions as a docking site for Pex5p, a mobile receptor for the import PTS1-containing proteins. J Cell Biol. 1996 Oct;135(1):97–109. doi: 10.1083/jcb.135.1.97. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Erdmann R., Blobel G. Identification of Pex13p a peroxisomal membrane receptor for the PTS1 recognition factor. J Cell Biol. 1996 Oct;135(1):111–121. doi: 10.1083/jcb.135.1.111. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Evan G. I., Lewis G. K., Ramsay G., Bishop J. M. Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product. Mol Cell Biol. 1985 Dec;5(12):3610–3616. doi: 10.1128/mcb.5.12.3610. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fransen M., Terlecky S. R., Subramani S. Identification of a human PTS1 receptor docking protein directly required for peroxisomal protein import. Proc Natl Acad Sci U S A. 1998 Jul 7;95(14):8087–8092. doi: 10.1073/pnas.95.14.8087. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fukuda S., Shimozawa N., Suzuki Y., Zhang Z., Tomatsu S., Tsukamoto T., Hashiguchi N., Osumi T., Masuno M., Imaizumi K. Human peroxisome assembly factor-2 (PAF-2): a gene responsible for group C peroxisome biogenesis disorder in humans. Am J Hum Genet. 1996 Dec;59(6):1210–1220. [PMC free article] [PubMed] [Google Scholar]
- Geisbrecht B. V., Collins C. S., Reuber B. E., Gould S. J. Disruption of a PEX1-PEX6 interaction is the most common cause of the neurologic disorders Zellweger syndrome, neonatal adrenoleukodystrophy, and infantile Refsum disease. Proc Natl Acad Sci U S A. 1998 Jul 21;95(15):8630–8635. doi: 10.1073/pnas.95.15.8630. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Geisbrecht B. V., Zhang D., Schulz H., Gould S. J. Characterization of PECI, a novel monofunctional Delta(3), Delta(2)-enoyl-CoA isomerase of mammalian peroxisomes. J Biol Chem. 1999 Jul 30;274(31):21797–21803. doi: 10.1074/jbc.274.31.21797. [DOI] [PubMed] [Google Scholar]
- Girzalsky W., Rehling P., Stein K., Kipper J., Blank L., Kunau W. H., Erdmann R. Involvement of Pex13p in Pex14p localization and peroxisomal targeting signal 2-dependent protein import into peroxisomes. J Cell Biol. 1999 Mar 22;144(6):1151–1162. doi: 10.1083/jcb.144.6.1151. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gould S. J., Kalish J. E., Morrell J. C., Bjorkman J., Urquhart A. J., Crane D. I. Pex13p is an SH3 protein of the peroxisome membrane and a docking factor for the predominantly cytoplasmic PTs1 receptor. J Cell Biol. 1996 Oct;135(1):85–95. doi: 10.1083/jcb.135.1.85. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gould S. J., Keller G. A., Hosken N., Wilkinson J., Subramani S. A conserved tripeptide sorts proteins to peroxisomes. J Cell Biol. 1989 May;108(5):1657–1664. doi: 10.1083/jcb.108.5.1657. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gould S. J., Krisans S., Keller G. A., Subramani S. Antibodies directed against the peroxisomal targeting signal of firefly luciferase recognize multiple mammalian peroxisomal proteins. J Cell Biol. 1990 Jan;110(1):27–34. doi: 10.1083/jcb.110.1.27. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gould S. J., McCollum D., Spong A. P., Heyman J. A., Subramani S. Development of the yeast Pichia pastoris as a model organism for a genetic and molecular analysis of peroxisome assembly. Yeast. 1992 Aug;8(8):613–628. doi: 10.1002/yea.320080805. [DOI] [PubMed] [Google Scholar]
- Gärtner J., Moser H., Valle D. Mutations in the 70K peroxisomal membrane protein gene in Zellweger syndrome. Nat Genet. 1992 Apr;1(1):16–23. doi: 10.1038/ng0492-16. [DOI] [PubMed] [Google Scholar]
- Honsho M., Tamura S., Shimozawa N., Suzuki Y., Kondo N., Fujiki Y. Mutation in PEX16 is causal in the peroxisome-deficient Zellweger syndrome of complementation group D. Am J Hum Genet. 1998 Dec;63(6):1622–1630. doi: 10.1086/302161. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huhse B., Rehling P., Albertini M., Blank L., Meller K., Kunau W. H. Pex17p of Saccharomyces cerevisiae is a novel peroxin and component of the peroxisomal protein translocation machinery. J Cell Biol. 1998 Jan 12;140(1):49–60. doi: 10.1083/jcb.140.1.49. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jones J. M., Nau K., Geraghty M. T., Erdmann R., Gould S. J. Identification of peroxisomal acyl-CoA thioesterases in yeast and humans. J Biol Chem. 1999 Apr 2;274(14):9216–9223. doi: 10.1074/jbc.274.14.9216. [DOI] [PubMed] [Google Scholar]
- Kamijo K., Taketani S., Yokota S., Osumi T., Hashimoto T. The 70-kDa peroxisomal membrane protein is a member of the Mdr (P-glycoprotein)-related ATP-binding protein superfamily. J Biol Chem. 1990 Mar 15;265(8):4534–4540. [PubMed] [Google Scholar]
- Kammerer S., Holzinger A., Welsch U., Roscher A. A. Cloning and characterization of the gene encoding the human peroxisomal assembly protein Pex3p. FEBS Lett. 1998 Jun 5;429(1):53–60. doi: 10.1016/s0014-5793(98)00557-2. [DOI] [PubMed] [Google Scholar]
- Kozak M. Regulation of translation in eukaryotic systems. Annu Rev Cell Biol. 1992;8:197–225. doi: 10.1146/annurev.cb.08.110192.001213. [DOI] [PubMed] [Google Scholar]
- Kunau W. H., Erdmann R. Peroxisome biogenesis: back to the endoplasmic reticulum? Curr Biol. 1998 Apr 23;8(9):R299–R302. doi: 10.1016/s0960-9822(98)70191-5. [DOI] [PubMed] [Google Scholar]
- Lazarow P. B., Fujiki Y. Biogenesis of peroxisomes. Annu Rev Cell Biol. 1985;1:489–530. doi: 10.1146/annurev.cb.01.110185.002421. [DOI] [PubMed] [Google Scholar]
- Lazarow P. B., Robbi M., Fujiki Y., Wong L. Biogenesis of peroxisomal proteins in vivo and in vitro. Ann N Y Acad Sci. 1982;386:285–300. doi: 10.1111/j.1749-6632.1982.tb21423.x. [DOI] [PubMed] [Google Scholar]
- Marzioch M., Erdmann R., Veenhuis M., Kunau W. H. PAS7 encodes a novel yeast member of the WD-40 protein family essential for import of 3-oxoacyl-CoA thiolase, a PTS2-containing protein, into peroxisomes. EMBO J. 1994 Oct 17;13(20):4908–4918. doi: 10.1002/j.1460-2075.1994.tb06818.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matsuzono Y., Kinoshita N., Tamura S., Shimozawa N., Hamasaki M., Ghaedi K., Wanders R. J., Suzuki Y., Kondo N., Fujiki Y. Human PEX19: cDNA cloning by functional complementation, mutation analysis in a patient with Zellweger syndrome, and potential role in peroxisomal membrane assembly. Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):2116–2121. doi: 10.1073/pnas.96.5.2116. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mihalik S. J., Morrell J. C., Kim D., Sacksteder K. A., Watkins P. A., Gould S. J. Identification of PAHX, a Refsum disease gene. Nat Genet. 1997 Oct;17(2):185–189. doi: 10.1038/ng1097-185. [DOI] [PubMed] [Google Scholar]
- Motley A. M., Hettema E. H., Hogenhout E. M., Brites P., ten Asbroek A. L., Wijburg F. A., Baas F., Heijmans H. S., Tabak H. F., Wanders R. J. Rhizomelic chondrodysplasia punctata is a peroxisomal protein targeting disease caused by a non-functional PTS2 receptor. Nat Genet. 1997 Apr;15(4):377–380. doi: 10.1038/ng0497-377. [DOI] [PubMed] [Google Scholar]
- Musacchio A., Saraste M., Wilmanns M. High-resolution crystal structures of tyrosine kinase SH3 domains complexed with proline-rich peptides. Nat Struct Biol. 1994 Aug;1(8):546–551. doi: 10.1038/nsb0894-546. [DOI] [PubMed] [Google Scholar]
- Okumoto K., Itoh R., Shimozawa N., Suzuki Y., Tamura S., Kondo N., Fujiki Y. Mutations in PEX10 is the cause of Zellweger peroxisome deficiency syndrome of complementation group B. Hum Mol Genet. 1998 Sep;7(9):1399–1405. doi: 10.1093/hmg/7.9.1399. [DOI] [PubMed] [Google Scholar]
- Okumoto K., Shimozawa N., Kawai A., Tamura S., Tsukamoto T., Osumi T., Moser H., Wanders R. J., Suzuki Y., Kondo N. PEX12, the pathogenic gene of group III Zellweger syndrome: cDNA cloning by functional complementation on a CHO cell mutant, patient analysis, and characterization of PEX12p. Mol Cell Biol. 1998 Jul;18(7):4324–4336. doi: 10.1128/mcb.18.7.4324. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Portsteffen H., Beyer A., Becker E., Epplen C., Pawlak A., Kunau W. H., Dodt G. Human PEX1 is mutated in complementation group 1 of the peroxisome biogenesis disorders. Nat Genet. 1997 Dec;17(4):449–452. doi: 10.1038/ng1297-449. [DOI] [PubMed] [Google Scholar]
- Purdue P. E., Lazarow P. B. Targeting of human catalase to peroxisomes is dependent upon a novel COOH-terminal peroxisomal targeting sequence. J Cell Biol. 1996 Aug;134(4):849–862. doi: 10.1083/jcb.134.4.849. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Purdue P. E., Zhang J. W., Skoneczny M., Lazarow P. B. Rhizomelic chondrodysplasia punctata is caused by deficiency of human PEX7, a homologue of the yeast PTS2 receptor. Nat Genet. 1997 Apr;15(4):381–384. doi: 10.1038/ng0497-381. [DOI] [PubMed] [Google Scholar]
- Reuber B. E., Germain-Lee E., Collins C. S., Morrell J. C., Ameritunga R., Moser H. W., Valle D., Gould S. J. Mutations in PEX1 are the most common cause of peroxisome biogenesis disorders. Nat Genet. 1997 Dec;17(4):445–448. doi: 10.1038/ng1297-445. [DOI] [PubMed] [Google Scholar]
- Santos M. J., Imanaka T., Shio H., Small G. M., Lazarow P. B. Peroxisomal membrane ghosts in Zellweger syndrome--aberrant organelle assembly. Science. 1988 Mar 25;239(4847):1536–1538. doi: 10.1126/science.3281254. [DOI] [PubMed] [Google Scholar]
- Schrader M., Reuber B. E., Morrell J. C., Jimenez-Sanchez G., Obie C., Stroh T. A., Valle D., Schroer T. A., Gould S. J. Expression of PEX11beta mediates peroxisome proliferation in the absence of extracellular stimuli. J Biol Chem. 1998 Nov 6;273(45):29607–29614. doi: 10.1074/jbc.273.45.29607. [DOI] [PubMed] [Google Scholar]
- Shimozawa N., Suzuki Y., Zhang Z., Imamura A., Tsukamoto T., Osumi T., Tateishi K., Okumoto K., Fujiki Y., Orii T. Peroxisome biogenesis disorders: identification of a new complementation group distinct from peroxisome-deficient CHO mutants and not complemented by human PEX 13. Biochem Biophys Res Commun. 1998 Feb 13;243(2):368–371. doi: 10.1006/bbrc.1997.8067. [DOI] [PubMed] [Google Scholar]
- Shimozawa N., Tsukamoto T., Suzuki Y., Orii T., Shirayoshi Y., Mori T., Fujiki Y. A human gene responsible for Zellweger syndrome that affects peroxisome assembly. Science. 1992 Feb 28;255(5048):1132–1134. doi: 10.1126/science.1546315. [DOI] [PubMed] [Google Scholar]
- South S. T., Gould S. J. Peroxisome synthesis in the absence of preexisting peroxisomes. J Cell Biol. 1999 Jan 25;144(2):255–266. doi: 10.1083/jcb.144.2.255. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Subramani S. Protein import into peroxisomes and biogenesis of the organelle. Annu Rev Cell Biol. 1993;9:445–478. doi: 10.1146/annurev.cb.09.110193.002305. [DOI] [PubMed] [Google Scholar]
- Swinkels B. W., Gould S. J., Bodnar A. G., Rachubinski R. A., Subramani S. A novel, cleavable peroxisomal targeting signal at the amino-terminus of the rat 3-ketoacyl-CoA thiolase. EMBO J. 1991 Nov;10(11):3255–3262. doi: 10.1002/j.1460-2075.1991.tb04889.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Warren D. S., Morrell J. C., Moser H. W., Valle D., Gould S. J. Identification of PEX10, the gene defective in complementation group 7 of the peroxisome-biogenesis disorders. Am J Hum Genet. 1998 Aug;63(2):347–359. doi: 10.1086/301963. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yahraus T., Braverman N., Dodt G., Kalish J. E., Morrell J. C., Moser H. W., Valle D., Gould S. J. The peroxisome biogenesis disorder group 4 gene, PXAAA1, encodes a cytoplasmic ATPase required for stability of the PTS1 receptor. EMBO J. 1996 Jun 17;15(12):2914–2923. [PMC free article] [PubMed] [Google Scholar]