Abstract
mtDNA sequence variation was studied in 121 dental samples from four Basque prehistoric sites, by high-resolution RFLP analysis. The results of this study are corroborated by (1) parallel analysis of 92 bone samples, (2) the use of controls during extraction and amplification, and (3) typing by both positive and negative restriction of the linked sites that characterize each haplogroup. The absence of haplogroup V in the prehistoric samples analyzed conflicts with the hypothesis proposed by Torroni et al., in which haplogroup V is considered as an mtDNA marker for a major Paleolithic population expansion from southwestern Europe, occurring approximately 10,000-15,000 years before the present (YBP). Our samples from the Basque Country provide a valuable tool for checking the previous hypothesis, which is based on genetic data from present-day populations. In light of the available data, the most realistic scenario to explain the origin and distribution of haplogroup V suggests that the mutation defining that haplogroup (4577 NlaIII) appeared at a time when the effective population size was small enough to allow genetic drift to act-and that such drift is responsible for the heterogeneity observed in Basques, with regard to the frequency of haplogroup V (0%-20%). This is compatible with the attributed date for the origin of that mutation (10,000-15, 000 YBP), because during the postglacial period (the Mesolithic, approximately 11,000 YBP) there was a major demographic change in the Basque Country, which minimized the effect of genetic drift. This interpretation does not rely on migratory movements to explain the distribution of haplogroup V in present-day Indo-European populations.
Full Text
The Full Text of this article is available as a PDF (228.8 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Aguirre A., Vicario A., Mazón L. I., Estomba A., Martínez de Pancorbo M., Arrieta Picó V., Perez Elortondo F., Lostao C. M. Are the Basques a single and a unique population? Am J Hum Genet. 1991 Aug;49(2):450–458. [PMC free article] [PubMed] [Google Scholar]
- Bertranpetit J., Sala J., Calafell F., Underhill P. A., Moral P., Comas D. Human mitochondrial DNA variation and the origin of Basques. Ann Hum Genet. 1995 Jan;59(Pt 1):63–81. doi: 10.1111/j.1469-1809.1995.tb01606.x. [DOI] [PubMed] [Google Scholar]
- Bélanger A., Hum D. W., Beaulieu M., Lévesque E., Guillemette C., Tchernof A., Bélanger G., Turgeon D., Dubois S. Characterization and regulation of UDP-glucuronosyltransferases in steroid target tissues. J Steroid Biochem Mol Biol. 1998 Apr;65(1-6):301–310. doi: 10.1016/s0960-0760(97)00183-0. [DOI] [PubMed] [Google Scholar]
- Calafell F., Bertranpetit J. Principal component analysis of gene frequencies and the origin of Basques. Am J Phys Anthropol. 1994 Feb;93(2):201–215. doi: 10.1002/ajpa.1330930205. [DOI] [PubMed] [Google Scholar]
- Calderon R., Wentzel J., Roberts D. F. HLA frequencies in Basques in Spain and in neighbouring populations. Ann Hum Biol. 1993 Mar-Apr;20(2):109–120. doi: 10.1080/03014469300002562. [DOI] [PubMed] [Google Scholar]
- Calderón R., Vidales C., Peña J. A., Perez-Miranda A., Dugoujon J. M. Immunoglobulin allotypes (GM and KM) in Basques from Spain: approach to the origin of the Basque population. Hum Biol. 1998 Aug;70(4):667–698. [PubMed] [Google Scholar]
- Cavalli-Sforza L. L., Minch E. Paleolithic and Neolithic lineages in the European mitochondrial gene pool. Am J Hum Genet. 1997 Jul;61(1):247–254. doi: 10.1016/S0002-9297(07)64303-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Côrte-Real H. B., Macaulay V. A., Richards M. B., Hariti G., Issad M. S., Cambon-Thomsen A., Papiha S., Bertranpetit J., Sykes B. C. Genetic diversity in the Iberian Peninsula determined from mitochondrial sequence analysis. Ann Hum Genet. 1996 Jul;60(Pt 4):331–350. doi: 10.1111/j.1469-1809.1996.tb01196.x. [DOI] [PubMed] [Google Scholar]
- Fox J. C., Ait-Khaled M., Webster A., Emery V. C. Eliminating PCR contamination: is UV irradiation the answer? J Virol Methods. 1991 Aug;33(3):375–382. doi: 10.1016/0166-0934(91)90037-z. [DOI] [PubMed] [Google Scholar]
- Ginther C., Issel-Tarver L., King M. C. Identifying individuals by sequencing mitochondrial DNA from teeth. Nat Genet. 1992 Oct;2(2):135–138. doi: 10.1038/ng1092-135. [DOI] [PubMed] [Google Scholar]
- Hagelberg E., Clegg J. B. Isolation and characterization of DNA from archaeological bone. Proc Biol Sci. 1991 Apr 22;244(1309):45–50. doi: 10.1098/rspb.1991.0049. [DOI] [PubMed] [Google Scholar]
- Handt O., Krings M., Ward R. H., Päbo S. The retrieval of ancient human DNA sequences. Am J Hum Genet. 1996 Aug;59(2):368–376. [PMC free article] [PubMed] [Google Scholar]
- Handt O., Richards M., Trommsdorff M., Kilger C., Simanainen J., Georgiev O., Bauer K., Stone A., Hedges R., Schaffner W. Molecular genetic analyses of the Tyrolean Ice Man. Science. 1994 Jun 17;264(5166):1775–1778. doi: 10.1126/science.8209259. [DOI] [PubMed] [Google Scholar]
- Horai S., Hayasaka K., Kondo R., Tsugane K., Takahata N. Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc Natl Acad Sci U S A. 1995 Jan 17;92(2):532–536. doi: 10.1073/pnas.92.2.532. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Howell N., Kubacka I., Mackey D. A. How rapidly does the human mitochondrial genome evolve? Am J Hum Genet. 1996 Sep;59(3):501–509. [PMC free article] [PubMed] [Google Scholar]
- Krings M., Stone A., Schmitz R. W., Krainitzki H., Stoneking M., Päbo S. Neandertal DNA sequences and the origin of modern humans. Cell. 1997 Jul 11;90(1):19–30. doi: 10.1016/s0092-8674(00)80310-4. [DOI] [PubMed] [Google Scholar]
- Lalueza C., Pérez-Pérez A., Prats E., Cornudella L., Turbón D. Lack of founding Amerindian mitochondrial DNA lineages in extinct aborigines from Tierra del Fuego-Patagonia. Hum Mol Genet. 1997 Jan;6(1):41–46. doi: 10.1093/hmg/6.1.41. [DOI] [PubMed] [Google Scholar]
- Manzano C., Orue J. M., de la Rúa C. The "Basqueness" of the Basques of Alava: a reappraisal from a multidisciplinary perspective. Am J Phys Anthropol. 1996 Feb;99(2):249–258. doi: 10.1002/(SICI)1096-8644(199602)99:2<249::AID-AJPA3>3.0.CO;2-U. [DOI] [PubMed] [Google Scholar]
- Mumm S., Whyte M. P., Thakker R. V., Buetow K. H., Schlessinger D. mtDNA analysis shows common ancestry in two kindreds with X-linked recessive hypoparathyroidism and reveals a heteroplasmic silent mutation. Am J Hum Genet. 1997 Jan;60(1):153–159. [PMC free article] [PubMed] [Google Scholar]
- Oota H., Saitou N., Matsushita T., Ueda S. A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences. Am J Phys Anthropol. 1995 Oct;98(2):133–145. doi: 10.1002/ajpa.1330980204. [DOI] [PubMed] [Google Scholar]
- Parr R. L., Carlyle S. W., O'Rourke D. H. Ancient DNA analysis of Fremont Amerindians of the Great Salt Lake Wetlands. Am J Phys Anthropol. 1996 Apr;99(4):507–518. doi: 10.1002/(SICI)1096-8644(199604)99:4<507::AID-AJPA1>3.0.CO;2-R. [DOI] [PubMed] [Google Scholar]
- Parsons T. J., Muniec D. S., Sullivan K., Woodyatt N., Alliston-Greiner R., Wilson M. R., Berry D. L., Holland K. A., Weedn V. W., Gill P. A high observed substitution rate in the human mitochondrial DNA control region. Nat Genet. 1997 Apr;15(4):363–368. doi: 10.1038/ng0497-363. [DOI] [PubMed] [Google Scholar]
- Penny D., Steel M., Waddell P. J., Hendy M. D. Improved analyses of human mtDNA sequences support a recent African origin for Homo sapiens. Mol Biol Evol. 1995 Sep;12(5):863–882. doi: 10.1093/oxfordjournals.molbev.a040263. [DOI] [PubMed] [Google Scholar]
- Pesole G., Sbisá E., Preparata G., Saccone C. The evolution of the mitochondrial D-loop region and the origin of modern man. Mol Biol Evol. 1992 Jul;9(4):587–598. doi: 10.1093/oxfordjournals.molbev.a040747. [DOI] [PubMed] [Google Scholar]
- Prince A. M., Andrus L. PCR: how to kill unwanted DNA. Biotechniques. 1992 Mar;12(3):358–360. [PubMed] [Google Scholar]
- Päbo S. Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification. Proc Natl Acad Sci U S A. 1989 Mar;86(6):1939–1943. doi: 10.1073/pnas.86.6.1939. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Päbo S., Higuchi R. G., Wilson A. C. Ancient DNA and the polymerase chain reaction. The emerging field of molecular archaeology. J Biol Chem. 1989 Jun 15;264(17):9709–9712. [PubMed] [Google Scholar]
- Ribetio-dos-Santos A. K., Santos S. E., Machado A. L., Guapindaia V., Zago M. A. Heterogeneity of mitochondrial DNA haplotypes in Pre-Columbian Natives of the Amazon region. Am J Phys Anthropol. 1996 Sep;101(1):29–37. doi: 10.1002/(SICI)1096-8644(199609)101:1<29::AID-AJPA3>3.0.CO;2-8. [DOI] [PubMed] [Google Scholar]
- Richards M., Côrte-Real H., Forster P., Macaulay V., Wilkinson-Herbots H., Demaine A., Papiha S., Hedges R., Bandelt H. J., Sykes B. Paleolithic and neolithic lineages in the European mitochondrial gene pool. Am J Hum Genet. 1996 Jul;59(1):185–203. [PMC free article] [PubMed] [Google Scholar]
- Rogers A. R., Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol. 1992 May;9(3):552–569. doi: 10.1093/oxfordjournals.molbev.a040727. [DOI] [PubMed] [Google Scholar]
- Ruvolo M. A new approach to studying modern human origins: hypothesis testing with coalescence time distributions. Mol Phylogenet Evol. 1996 Feb;5(1):202–219. doi: 10.1006/mpev.1996.0014. [DOI] [PubMed] [Google Scholar]
- Sajantila A., Lahermo P., Anttinen T., Lukka M., Sistonen P., Savontaus M. L., Aula P., Beckman L., Tranebjaerg L., Gedde-Dahl T. Genes and languages in Europe: an analysis of mitochondrial lineages. Genome Res. 1995 Aug;5(1):42–52. doi: 10.1101/gr.5.1.42. [DOI] [PubMed] [Google Scholar]
- Slatkin M., Hudson R. R. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics. 1991 Oct;129(2):555–562. doi: 10.1093/genetics/129.2.555. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stone A. C., Stoneking M. Ancient DNA from a pre-Columbian Amerindian population. Am J Phys Anthropol. 1993 Dec;92(4):463–471. doi: 10.1002/ajpa.1330920405. [DOI] [PubMed] [Google Scholar]
- Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 1993 May;10(3):512–526. doi: 10.1093/oxfordjournals.molbev.a040023. [DOI] [PubMed] [Google Scholar]
- Torroni A., Bandelt H. J., D'Urbano L., Lahermo P., Moral P., Sellitto D., Rengo C., Forster P., Savontaus M. L., Bonné-Tamir B. mtDNA analysis reveals a major late Paleolithic population expansion from southwestern to northeastern Europe. Am J Hum Genet. 1998 May;62(5):1137–1152. doi: 10.1086/301822. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Torroni A., Huoponen K., Francalacci P., Petrozzi M., Morelli L., Scozzari R., Obinu D., Savontaus M. L., Wallace D. C. Classification of European mtDNAs from an analysis of three European populations. Genetics. 1996 Dec;144(4):1835–1850. doi: 10.1093/genetics/144.4.1835. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zierdt H., Hummel S., Herrmann B. Amplification of human short tandem repeats from medieval teeth and bone samples. Hum Biol. 1996 Apr;68(2):185–199. [PubMed] [Google Scholar]