Abstract
Four exchangeable protons with large hyperfine shifts are assigned in the heme pocket of sperm whale met-cyano myoglobin reconstituted with heme possessing acetyl groups, ethyl groups, bromines, and hydrogens at the 2,4 position, using both relaxation and chemical-shift data. The four protons arise from the ring NH's of the proximal (F8), distal (E7), and FG2 histidines, and the peptide NH of His F8. The similarity of all chemical shifts to those of the native protein as well as the invariance of the relaxation rates of the distal histidyl ring NH dictate essentially the same structure for the heme cavity of both native and reconstituted proteins. The exchange rates with bulk water of the four labile proteins in each modified protein were determined by saturation-transfer and line width methods. All four labile protons were found to have the same exchange rate as in the native protein for acetyl and ethyl 2,4 substituents; the two resolved labile protons in the derivative with 2,4 bromine were also unchanged. The reconstituted protein with hydrogens at the 2,4 position exhibited slower exchange rates for three of the four protons, indicating an increased dynamic stability of the heme pocket in the absence of bulky 2,4 substituents.
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Selected References
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- Austin R. H., Beeson K. W., Eisenstein L., Frauenfelder H., Gunsalus I. C. Dynamics of ligand binding to myoglobin. Biochemistry. 1975 Dec 2;14(24):5355–5373. doi: 10.1021/bi00695a021. [DOI] [PubMed] [Google Scholar]
- Case D. A., Karplus M. Dynamics of ligand binding to heme proteins. J Mol Biol. 1979 Aug 15;132(3):343–368. doi: 10.1016/0022-2836(79)90265-1. [DOI] [PubMed] [Google Scholar]
- Caughey W. S., Alben J. O., Fujimoto W. Y., York J. L. Substituted deuteroporphyrins. I. Reactions at the periphery of the porphyrin ring. J Org Chem. 1966 Aug;31(8):2631–2640. doi: 10.1021/jo01346a042. [DOI] [PubMed] [Google Scholar]
- Englander S. W., Calhoun D. B., Englander J. J., Kallenbach N. R., Liem R. K., Malin E. L., Mandal C., Rogero J. R. Individual breathing reactions measured in hemoglobin by hydrogen exchange methods. Biophys J. 1980 Oct;32(1):577–589. doi: 10.1016/S0006-3495(80)84991-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Englander S. W. Measurement of structural and free energy changes in hemoglobin by hydrogen exchange methods. Ann N Y Acad Sci. 1975 Apr 15;244:10–27. doi: 10.1111/j.1749-6632.1975.tb41518.x. [DOI] [PubMed] [Google Scholar]
- Frauenfelder H., Petsko G. A. Structural dynamics of liganded myoglobin. Biophys J. 1980 Oct;32(1):465–483. doi: 10.1016/S0006-3495(80)84984-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Frauenfelder H., Petsko G. A., Tsernoglou D. Temperature-dependent X-ray diffraction as a probe of protein structural dynamics. Nature. 1979 Aug 16;280(5723):558–563. doi: 10.1038/280558a0. [DOI] [PubMed] [Google Scholar]
- Hedlund B. E., Hallaway P. E., Hallaway B. E., Benson E. S., Rosenberg A. Hydrogen exchange kinetics of human hemoglobins. The pH dependence of solvent accessibility in cyanomet-, oxy-, and deoxyhemoglobin. J Biol Chem. 1978 May 25;253(10):3702–3707. [PubMed] [Google Scholar]
- Hilton B. D., Woodward C. K. On the mechanism of isotope exchange kinetics of single protons in bovine pancreatic trypsin inhibitor. Biochemistry. 1979 Dec 25;18(26):5834–5841. doi: 10.1021/bi00593a013. [DOI] [PubMed] [Google Scholar]
- Kossiakoff A. A. Protein dynamics investigated by the neutron diffraction-hydrogen exchange technique. Nature. 1982 Apr 22;296(5859):713–721. doi: 10.1038/296713a0. [DOI] [PubMed] [Google Scholar]
- Krishna N. R., Huang D. H., Glickson J. D., Rowan R., 3rd, Walter R. Amide hydrogen exchange rates of peptides in H2O solution by 1H nuclear magnetic resonance transfer of solvent saturation method. Conformations of oxytocin and lysine vasopressin in aqueous solution. Biophys J. 1979 Jun;26(3):345–366. doi: 10.1016/S0006-3495(79)85258-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- La Mar G. N., Budd D. L., Viscio D. B., Smith K. M., Langry K. C. Proton nuclear magnetic resonance characterization of heme disorder in hemoproteins. Proc Natl Acad Sci U S A. 1978 Dec;75(12):5755–5759. doi: 10.1073/pnas.75.12.5755. [DOI] [PMC free article] [PubMed] [Google Scholar]
- La Mar G. N., Burns P. D., Jackson J. T., Smith K. M., Langry K. C., Strittmatter P. Proton magnetic resonance determination of the relative heme orientations in disordered native and reconstituted ferricytochrome b5. Assignment of heme resonances by deuterium labeling. J Biol Chem. 1981 Jun 25;256(12):6075–6079. [PubMed] [Google Scholar]
- La Mar G. N., Cutnell J. D., Kong S. B. Proton magnetic resonance characterization of the dynamic stability of the heme pocket in myoglobin by the exchange behavior of the labile proton of the proximal histidyl imidazole. Biophys J. 1981 May;34(2):217–226. doi: 10.1016/S0006-3495(81)84846-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- La Mar G. N., Smith K. M., Gersonde K., Sick H., Overkamp M. Proton nuclear nagnetic resonance characterization of heme disorder in monomeric insect hemoglobins. J Biol Chem. 1980 Jan 10;255(1):66–70. [PubMed] [Google Scholar]
- Perutz M. F., Mathews F. S. An x-ray study of azide methaemoglobin. J Mol Biol. 1966 Oct 28;21(1):199–202. doi: 10.1016/0022-2836(66)90088-x. [DOI] [PubMed] [Google Scholar]
- Perutz M. F. Structure and mechanism of haemoglobin. Br Med Bull. 1976 Sep;32(3):195–208. doi: 10.1093/oxfordjournals.bmb.a071363. [DOI] [PubMed] [Google Scholar]
- Phillips S. E. Structure and refinement of oxymyoglobin at 1.6 A resolution. J Mol Biol. 1980 Oct 5;142(4):531–554. doi: 10.1016/0022-2836(80)90262-4. [DOI] [PubMed] [Google Scholar]
- Richarz R., Sehr P., Wagner G., Wüthrich K. Kinetics of the exchange of individual amide protons in the basic pancreatic trypsin inhibitor. J Mol Biol. 1979 May 5;130(1):19–30. doi: 10.1016/0022-2836(79)90549-7. [DOI] [PubMed] [Google Scholar]
- Seybert D. W., Moffat K. Structure of hemoglobin reconstituted with mesoheme. J Mol Biol. 1977 Jun 25;113(2):419–430. doi: 10.1016/0022-2836(77)90150-4. [DOI] [PubMed] [Google Scholar]
- Sheard B., Yamane T., Shulman R. G. Nuclear magnetic resonance study of cyanoferrimyoglobin; identification of pseudocontact shifts. J Mol Biol. 1970 Oct 14;53(1):35–48. doi: 10.1016/0022-2836(70)90044-6. [DOI] [PubMed] [Google Scholar]
- Takano T. Structure of myoglobin refined at 2-0 A resolution. I. Crystallographic refinement of metmyoglobin from sperm whale. J Mol Biol. 1977 Mar 5;110(3):537–568. doi: 10.1016/s0022-2836(77)80111-3. [DOI] [PubMed] [Google Scholar]
- Woodward C. K., Hilton B. D. Hydrogen exchange kinetics and internal motions in proteins and nucleic acids. Annu Rev Biophys Bioeng. 1979;8:99–127. doi: 10.1146/annurev.bb.08.060179.000531. [DOI] [PubMed] [Google Scholar]
