Abstract
To identify mutants potentially defective in signaling intermediates specific to phytochrome A (phyA), we screened for extragenic mutations that suppress the morphological phenotype exhibited by a weak phyA mutant (phyA-105) of Arabidopsis. A new recessive mutant, designated spa1 (for suppressor of phyA-105), was isolated and mapped to the bottom of chromosome 2. spa1 phyA-105 double mutants exhibit restoration of several responses to limiting fluence rates of continuous far-red light that are absent in the parental phyA-105 mutant, such as deetiolation, anthocyanin accumulation, and a far-red light-induced inability of seedlings to green upon subsequent transfer to continuous white light. spa1 mutations do not cause a phenotype in darkness, indicating that the suppression phenotype is light dependent. Enhanced photoresponsiveness was observed in spa1 seedlings in a wild-type PHYA background as well as in the mutant phyA-105 background but not in a mutant phyA null background. These results indicate that phyA is necessary in a non-allele-specific fashion for the expression of the spa1 mutant phenotype and that phyB to phyE are not sufficient for this effect. Taken together, the data suggest that spa1 mutations specifically amplify phyA signaling and therefore that the SPA1 locus encodes a component that acts negatively early in the phyA-specific signaling pathway.
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- Ahmad M., Cashmore A. R. The pef mutants of Arabidopsis thaliana define lesions early in the phytochrome signaling pathway. Plant J. 1996 Dec;10(6):1103–1110. doi: 10.1046/j.1365-313x.1996.10061103.x. [DOI] [PubMed] [Google Scholar]
- Barnes S. A., Nishizawa N. K., Quaggio R. B., Whitelam G. C., Chua N. H. Far-red light blocks greening of Arabidopsis seedlings via a phytochrome A-mediated change in plastid development. Plant Cell. 1996 Apr;8(4):601–615. doi: 10.1105/tpc.8.4.601. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bell C. J., Ecker J. R. Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics. 1994 Jan 1;19(1):137–144. doi: 10.1006/geno.1994.1023. [DOI] [PubMed] [Google Scholar]
- Botto J. F., Sanchez R. A., Whitelam G. C., Casal J. J. Phytochrome A Mediates the Promotion of Seed Germination by Very Low Fluences of Light and Canopy Shade Light in Arabidopsis. Plant Physiol. 1996 Feb;110(2):439–444. doi: 10.1104/pp.110.2.439. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Boylan M. T., Quail P. H. Phytochrome a overexpression inhibits hypocotyl elongation in transgenic Arabidopsis. Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10806–10810. doi: 10.1073/pnas.88.23.10806. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chory J., Chatterjee M., Cook R. K., Elich T., Fankhauser C., Li J., Nagpal P., Neff M., Pepper A., Poole D. From seed germination to flowering, light controls plant development via the pigment phytochrome. Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12066–12071. doi: 10.1073/pnas.93.22.12066. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chory J. Light modulation of vegetative development. Plant Cell. 1997 Jul;9(7):1225–1234. doi: 10.1105/tpc.9.7.1225. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chory J., Nagpal P., Peto C. A. Phenotypic and Genetic Analysis of det2, a New Mutant That Affects Light-Regulated Seedling Development in Arabidopsis. Plant Cell. 1991 May;3(5):445–459. doi: 10.1105/tpc.3.5.445. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clack T., Mathews S., Sharrock R. A. The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. Plant Mol Biol. 1994 Jun;25(3):413–427. doi: 10.1007/BF00043870. [DOI] [PubMed] [Google Scholar]
- Dehesh K., Franci C., Parks B. M., Seeley K. A., Short T. W., Tepperman J. M., Quail P. H. Arabidopsis HY8 locus encodes phytochrome A. Plant Cell. 1993 Sep;5(9):1081–1088. doi: 10.1105/tpc.5.9.1081. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Deng X. W. Fresh view of light signal transduction in plants. Cell. 1994 Feb 11;76(3):423–426. doi: 10.1016/0092-8674(94)90107-4. [DOI] [PubMed] [Google Scholar]
- Edwards K., Johnstone C., Thompson C. A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res. 1991 Mar 25;19(6):1349–1349. doi: 10.1093/nar/19.6.1349. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Elich T. D., Chory J. Initial events in phytochrome signalling: still in the dark. Plant Mol Biol. 1994 Dec;26(5):1315–1327. doi: 10.1007/BF00016477. [DOI] [PubMed] [Google Scholar]
- Emmler K., Stockhaus J., Chua N. H., Schäfer E. An amino-terminal deletion of rice phytochrome A results in a dominant negative suppression of tobacco phytochrome A activity in transgenic tobacco seedlings. Planta. 1995;197(1):103–110. doi: 10.1007/BF00239945. [DOI] [PubMed] [Google Scholar]
- Janoudi A. K., Gordon W. R., Wagner D., Quail P., Poff K. L. Multiple phytochromes are involved in red-light-induced enhancement of first-positive phototropism in Arabidopsis thaliana. Plant Physiol. 1997 Mar;113(3):975–979. doi: 10.1104/pp.113.3.975. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jordan E. T., Cherry J. R., Walker J. M., Vierstra R. D. The amino-terminus of phytochrome A contains two distinct functional domains. Plant J. 1996 Feb;9(2):243–257. doi: 10.1046/j.1365-313x.1996.09020243.x. [DOI] [PubMed] [Google Scholar]
- Kim B. C., Soh M. C., Kang B. J., Furuya M., Nam H. G. Two dominant photomorphogenic mutations of Arabidopsis thaliana identified as suppressor mutations of hy2. Plant J. 1996 Apr;9(4):441–456. doi: 10.1046/j.1365-313x.1996.09040441.x. [DOI] [PubMed] [Google Scholar]
- Konieczny A., Ausubel F. M. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 1993 Aug;4(2):403–410. doi: 10.1046/j.1365-313x.1993.04020403.x. [DOI] [PubMed] [Google Scholar]
- Kunkel T., Neuhaus G., Batschauer A., Chua N. H., Schäfer E. Functional analysis of yeast-derived phytochrome A and B phycocyanobilin adducts. Plant J. 1996 Oct;10(4):625–636. doi: 10.1046/j.1365-313x.1996.10040625.x. [DOI] [PubMed] [Google Scholar]
- McNellis T. W., Deng X. W. Light control of seedling morphogenetic pattern. Plant Cell. 1995 Nov;7(11):1749–1761. doi: 10.1105/tpc.7.11.1749. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McNellis T. W., von Arnim A. G., Deng X. W. Overexpression of Arabidopsis COP1 results in partial suppression of light-mediated development: evidence for a light-inactivable repressor of photomorphogenesis. Plant Cell. 1994 Oct;6(10):1391–1400. doi: 10.1105/tpc.6.10.1391. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Millar A. J., McGrath R. B., Chua N. H. Phytochrome phototransduction pathways. Annu Rev Genet. 1994;28:325–349. doi: 10.1146/annurev.ge.28.120194.001545. [DOI] [PubMed] [Google Scholar]
- Miséra S., Müller A. J., Weiland-Heidecker U., Jürgens G. The FUSCA genes of Arabidopsis: negative regulators of light responses. Mol Gen Genet. 1994 Aug 2;244(3):242–252. doi: 10.1007/BF00285451. [DOI] [PubMed] [Google Scholar]
- Nagatani A., Reed J. W., Chory J. Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A. Plant Physiol. 1993 May;102(1):269–277. doi: 10.1104/pp.102.1.269. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Neff M. M., Van Volkenburgh E. Light-Stimulated Cotyledon Expansion in Arabidopsis Seedlings (The Role of Phytochrome B). Plant Physiol. 1994 Mar;104(3):1027–1032. doi: 10.1104/pp.104.3.1027. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Parks B. M., Quail P. H., Hangarter R. P. Phytochrome A regulates red-light induction of phototropic enhancement in Arabidopsis. Plant Physiol. 1996 Jan;110(1):155–162. doi: 10.1104/pp.110.1.155. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Parks B. M., Quail P. H. hy8, a new class of arabidopsis long hypocotyl mutants deficient in functional phytochrome A. Plant Cell. 1993 Jan;5(1):39–48. doi: 10.1105/tpc.5.1.39. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Quail P. H., Boylan M. T., Parks B. M., Short T. W., Xu Y., Wagner D. Phytochromes: photosensory perception and signal transduction. Science. 1995 May 5;268(5211):675–680. doi: 10.1126/science.7732376. [DOI] [PubMed] [Google Scholar]
- Quail P. H. Phytochrome: a light-activated molecular switch that regulates plant gene expression. Annu Rev Genet. 1991;25:389–409. doi: 10.1146/annurev.ge.25.120191.002133. [DOI] [PubMed] [Google Scholar]
- Reed J. W., Chory J. Mutational analyses of light-controlled seedling development in Arabidopsis. Semin Cell Biol. 1994 Oct;5(5):327–334. doi: 10.1006/scel.1994.1039. [DOI] [PubMed] [Google Scholar]
- Reed J. W., Nagatani A., Elich T. D., Fagan M., Chory J. Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development. Plant Physiol. 1994 Apr;104(4):1139–1149. doi: 10.1104/pp.104.4.1139. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reed J. W., Nagpal P., Poole D. S., Furuya M., Chory J. Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell. 1993 Feb;5(2):147–157. doi: 10.1105/tpc.5.2.147. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sharrock R. A., Quail P. H. Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev. 1989 Nov;3(11):1745–1757. doi: 10.1101/gad.3.11.1745. [DOI] [PubMed] [Google Scholar]
- Shinomura T., Nagatani A., Hanzawa H., Kubota M., Watanabe M., Furuya M. Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):8129–8133. doi: 10.1073/pnas.93.15.8129. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Somers D. E., Quail P. H. Phytochrome-Mediated Light Regulation of PHYA- and PHYB-GUS Transgenes in Arabidopsis thaliana Seedlings. Plant Physiol. 1995 Feb;107(2):523–534. doi: 10.1104/pp.107.2.523. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Somers D. E., Sharrock R. A., Tepperman J. M., Quail P. H. The hy3 Long Hypocotyl Mutant of Arabidopsis Is Deficient in Phytochrome B. Plant Cell. 1991 Dec;3(12):1263–1274. doi: 10.1105/tpc.3.12.1263. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stockhaus J., Nagatani A., Halfter U., Kay S., Furuya M., Chua N. H. Serine-to-alanine substitutions at the amino-terminal region of phytochrome A result in an increase in biological activity. Genes Dev. 1992 Dec;6(12A):2364–2372. doi: 10.1101/gad.6.12a.2364. [DOI] [PubMed] [Google Scholar]
- Valvekens D., Van Montagu M., Van Lijsebettens M. Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci U S A. 1988 Aug;85(15):5536–5540. doi: 10.1073/pnas.85.15.5536. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Von Arnim Albrecht, Deng Xing-Wang. LIGHT CONTROL OF SEEDLING DEVELOPMENT. Annu Rev Plant Physiol Plant Mol Biol. 1996 Jun;47(NaN):215–243. doi: 10.1146/annurev.arplant.47.1.215. [DOI] [PubMed] [Google Scholar]
- Wagner D., Hoecker U., Quail P. H. RED1 is necessary for phytochrome B-mediated red light-specific signal transduction in Arabidopsis. Plant Cell. 1997 May;9(5):731–743. doi: 10.1105/tpc.9.5.731. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wagner D., Koloszvari M., Quail P. H. Two Small Spatially Distinct Regions of Phytochrome B Are Required for Efficient Signaling Rates. Plant Cell. 1996 May;8(5):859–871. doi: 10.1105/tpc.8.5.859. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wagner D., Tepperman J. M., Quail P. H. Overexpression of Phytochrome B Induces a Short Hypocotyl Phenotype in Transgenic Arabidopsis. Plant Cell. 1991 Dec;3(12):1275–1288. doi: 10.1105/tpc.3.12.1275. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Whitelam G. C., Johnson E., Peng J., Carol P., Anderson M. L., Cowl J. S., Harberd N. P. Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. Plant Cell. 1993 Jul;5(7):757–768. doi: 10.1105/tpc.5.7.757. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Xu Y., Parks B. M., Short T. W., Quail P. H. Missense mutations define a restricted segment in the C-terminal domain of phytochrome A critical to its regulatory activity. Plant Cell. 1995 Sep;7(9):1433–1443. doi: 10.1105/tpc.7.9.1433. [DOI] [PMC free article] [PubMed] [Google Scholar]