Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1996 Apr 1;24(7):1369–1374. doi: 10.1093/nar/24.7.1369

Fully edited and partially edited nad9 transcripts differ in size and both are associated with polysomes in potato mitochondria.

B Lu 1, M R Hanson 1
PMCID: PMC145777  PMID: 8614643

Abstract

Two classes of nad9 transcripts are present at different abundances in the steady-state RNA pool of potato mitochondria. The 5'- and 3' termini of the transcripts were determined by primer extension and S1 nuclease protection analyses respectively. Using two primer pairs that will either specifically amplify the larger transcript or amplify both the larger and the smaller transcripts in RT-PCR analyses it was found that the larger nad9 transcripts are partially edited, while the smaller transcripts are fully edited. Both the larger and the smaller transcripts were found to be associated with mitochondrial polysomes. The polysome association was found to be sensitive to EDTA and puromycin treatment. Therefore, both fully and partially edited nad9 transcripts appear to be engaged in translation.

Full Text

The Full Text of this article is available as a PDF (96.3 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Barkan A. Nuclear Mutants of Maize with Defects in Chloroplast Polysome Assembly Have Altered Chloroplast RNA Metabolism. Plant Cell. 1993 Apr;5(4):389–402. doi: 10.1105/tpc.5.4.389. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bégu D., Graves P. V., Domec C., Arselin G., Litvak S., Araya A. RNA editing of wheat mitochondrial ATP synthase subunit 9: direct protein and cDNA sequencing. Plant Cell. 1990 Dec;2(12):1283–1290. doi: 10.1105/tpc.2.12.1283. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Chapdelaine Y., Bonen L. The wheat mitochondrial gene for subunit I of the NADH dehydrogenase complex: a trans-splicing model for this gene-in-pieces. Cell. 1991 May 3;65(3):465–472. doi: 10.1016/0092-8674(91)90464-a. [DOI] [PubMed] [Google Scholar]
  4. Chen S. H., Habib G., Yang C. Y., Gu Z. W., Lee B. R., Weng S. A., Silberman S. R., Cai S. J., Deslypere J. P., Rosseneu M. Apolipoprotein B-48 is the product of a messenger RNA with an organ-specific in-frame stop codon. Science. 1987 Oct 16;238(4825):363–366. doi: 10.1126/science.3659919. [DOI] [PubMed] [Google Scholar]
  5. Chua N. H., Blobel G., Siekevitz P. Isolation of cytoplasmic and chloroplast ribosomes and their dissociation into active subunits from Chlamydomonas reinhardtii. J Cell Biol. 1973 Jun;57(3):798–814. doi: 10.1083/jcb.57.3.798. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Conklin P. L., Wilson R. K., Hanson M. R. Multiple trans-splicing events are required to produce a mature nad1 transcript in a plant mitochondrion. Genes Dev. 1991 Aug;5(8):1407–1415. doi: 10.1101/gad.5.8.1407. [DOI] [PubMed] [Google Scholar]
  7. Covello P. S., Gray M. W. RNA editing in plant mitochondria. Nature. 1989 Oct 19;341(6243):662–666. doi: 10.1038/341662a0. [DOI] [PubMed] [Google Scholar]
  8. Graves P. V., Bégu D., Velours J., Neau E., Belloc F., Litvak S., Araya A. Direct protein sequencing of wheat mitochondrial ATP synthase subunit 9 confirms RNA editing in plants. J Mol Biol. 1990 Jul 5;214(1):1–6. doi: 10.1016/0022-2836(90)90138-c. [DOI] [PubMed] [Google Scholar]
  9. Grohmann L., Thieck O., Herz U., Schröder W., Brennicke A. Translation of nad9 mRNAs in mitochondria from Solanum tuberosum is restricted to completely edited transcripts. Nucleic Acids Res. 1994 Aug 25;22(16):3304–3311. doi: 10.1093/nar/22.16.3304. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Gualberto J. M., Bonnard G., Lamattina L., Grienenberger J. M. Expression of the wheat mitochondrial nad3-rps12 transcription unit: correlation between editing and mRNA maturation. Plant Cell. 1991 Oct;3(10):1109–1120. doi: 10.1105/tpc.3.10.1109. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Gualberto J. M., Lamattina L., Bonnard G., Weil J. H., Grienenberger J. M. RNA editing in wheat mitochondria results in the conservation of protein sequences. Nature. 1989 Oct 19;341(6243):660–662. doi: 10.1038/341660a0. [DOI] [PubMed] [Google Scholar]
  12. Hanson M. R., Bogorad L. Effects of erythromycin on membrane-bound chloroplast ribosomes from wild-type Chlamydomonas reinhardi and erythromycin-resistant mutants. Biochim Biophys Acta. 1977 Dec 2;479(3):279–289. doi: 10.1016/0005-2787(77)90110-1. [DOI] [PubMed] [Google Scholar]
  13. Hiesel R., Wissinger B., Schuster W., Brennicke A. RNA editing in plant mitochondria. Science. 1989 Dec 22;246(4937):1632–1634. doi: 10.1126/science.2480644. [DOI] [PubMed] [Google Scholar]
  14. Lu B., Hanson M. R. A single homogeneous form of ATP6 protein accumulates in petunia mitochondria despite the presence of differentially edited atp6 transcripts. Plant Cell. 1994 Dec;6(12):1955–1968. doi: 10.1105/tpc.6.12.1955. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Lu B., Hanson M. R. A single nuclear gene specifies the abundance and extent of RNA editing of a plant mitochondrial transcript. Nucleic Acids Res. 1992 Nov 11;20(21):5699–5703. doi: 10.1093/nar/20.21.5699. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Maréchal-Drouard L., Ramamonjisoa D., Cosset A., Weil J. H., Dietrich A. Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs. Nucleic Acids Res. 1993 Oct 25;21(21):4909–4914. doi: 10.1093/nar/21.21.4909. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Neuburger M., Journet E. P., Bligny R., Carde J. P., Douce R. Purification of plant mitochondria by isopycnic centrifugation in density gradients of Percoll. Arch Biochem Biophys. 1982 Aug;217(1):312–323. doi: 10.1016/0003-9861(82)90507-0. [DOI] [PubMed] [Google Scholar]
  18. Phreaner C. G., Williams M. A., Mulligan R. M. Incomplete editing of rps12 transcripts results in the synthesis of polymorphic polypeptides in plant mitochondria. Plant Cell. 1996 Jan;8(1):107–117. doi: 10.1105/tpc.8.1.107. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Powell L. M., Wallis S. C., Pease R. J., Edwards Y. H., Knott T. J., Scott J. A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine. Cell. 1987 Sep 11;50(6):831–840. doi: 10.1016/0092-8674(87)90510-1. [DOI] [PubMed] [Google Scholar]
  20. Salazar R. A., Pring D. R., Kempken F. Editing of mitochondrial atp9 transcripts from two sorghum lines. Curr Genet. 1991 Dec;20(6):483–486. doi: 10.1007/BF00334776. [DOI] [PubMed] [Google Scholar]
  21. Schuster W., Brennicke A. RNA editing of ATPase subunit 9 transcripts in Oenothera mitochondria. FEBS Lett. 1990 Jul 30;268(1):252–256. doi: 10.1016/0014-5793(90)81021-f. [DOI] [PubMed] [Google Scholar]
  22. Schuster W., Ternes R., Knoop V., Hiesel R., Wissinger B., Brennicke A. Distribution of RNA editing sites in Oenothera mitochondrial mRNAs and rRNAs. Curr Genet. 1991 Nov;20(5):397–404. doi: 10.1007/BF00317068. [DOI] [PubMed] [Google Scholar]
  23. Schuster W., Wissinger B., Unseld M., Brennicke A. Transcripts of the NADH-dehydrogenase subunit 3 gene are differentially edited in Oenothera mitochondria. EMBO J. 1990 Jan;9(1):263–269. doi: 10.1002/j.1460-2075.1990.tb08104.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Sharma P. M., Bowman M., Madden S. L., Rauscher F. J., 3rd, Sukumar S. RNA editing in the Wilms' tumor susceptibility gene, WT1. Genes Dev. 1994 Mar 15;8(6):720–731. doi: 10.1101/gad.8.6.720. [DOI] [PubMed] [Google Scholar]
  25. Sommer B., Köhler M., Sprengel R., Seeburg P. H. RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell. 1991 Oct 4;67(1):11–19. doi: 10.1016/0092-8674(91)90568-j. [DOI] [PubMed] [Google Scholar]
  26. Sutton C. A., Conklin P. L., Pruitt K. D., Hanson M. R. Editing of pre-mRNAs can occur before cis- and trans-splicing in Petunia mitochondria. Mol Cell Biol. 1991 Aug;11(8):4274–4277. doi: 10.1128/mcb.11.8.4274. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Walbot V. RNA editing fixes problems in plant mitochondrial transcripts. Trends Genet. 1991 Feb;7(2):37–39. doi: 10.1016/0168-9525(91)90225-F. [DOI] [PubMed] [Google Scholar]
  28. Wintz H., Hanson M. R. A termination codon is created by RNA editing in the petunia atp9 transcript. Curr Genet. 1991 Jan;19(1):61–64. doi: 10.1007/BF00362089. [DOI] [PubMed] [Google Scholar]
  29. Yang A. J., Mulligan R. M. RNA editing intermediates of cox2 transcripts in maize mitochondria. Mol Cell Biol. 1991 Aug;11(8):4278–4281. doi: 10.1128/mcb.11.8.4278. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES