Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1996 Apr 1;24(7):1202–1211. doi: 10.1093/nar/24.7.1202

The PARP promoter of Trypanosoma brucei is developmentally regulated in a chromosomal context.

S Biebinger 1, S Rettenmaier 1, J Flaspohler 1, C Hartmann 1, J Peña-Diaz 1, L E Wirtz 1, H R Hotz 1, J D Barry 1, C Clayton 1
PMCID: PMC145797  PMID: 8614620

Abstract

African trypanosomes are extracellular protozoan parasites that are transmitted from one mammalian host to the next by tsetse flies. Bloodstream forms express variant surface glycoprotein (VSG); the tsetse fly (procyclic) forms express instead the procyclic acidic repetitive protein (PARP). PARP mRNA is abundant in procyclic forms and almost undetectable in blood-stream forms. Post-transcriptional mechanisms are mainly responsible for PARP mRNA regulation but results of nuclear run-on experiments suggested that transcription might also be regulated. We measured the activity of genomically-integrated PARP, VSG and rRNA promoters in permanently-transformed blood-stream and procyclic form trypanosomes, using reporter gene constructs that showed no post-transcriptional regulation. When the constructs were integrated in the rRNA non-transcribed spacer, the ribosomal RNA and VSG promoters were not developmentally regulated, but integration at the PARP locus reduced rRNA promoter activity in bloodstream forms. PARP promoter activity was 5-fold down-regulated in bloodstream forms when integrated at either site. Regulation was probably at the level of transcriptional initiation, but elongation through plasmid vector sequences was also reduced.

Full Text

The Full Text of this article is available as a PDF (151.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aly R., Argaman M., Halman S., Shapira M. A regulatory role for the 5' and 3' untranslated regions in differential expression of hsp83 in Leishmania. Nucleic Acids Res. 1994 Aug 11;22(15):2922–2929. doi: 10.1093/nar/22.15.2922. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Argaman M., Aly R., Shapira M. Expression of heat shock protein 83 in Leishmania is regulated post-transcriptionally. Mol Biochem Parasitol. 1994 Mar;64(1):95–110. doi: 10.1016/0166-6851(94)90138-4. [DOI] [PubMed] [Google Scholar]
  3. Ben Amar M. F., Pays A., Tebabi P., Dero B., Seebeck T., Steinert M., Pays E. Structure and transcription of the actin gene of Trypanosoma brucei. Mol Cell Biol. 1988 May;8(5):2166–2176. doi: 10.1128/mcb.8.5.2166. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Berberof M., Vanhamme L., Tebabi P., Pays A., Jefferies D., Welburn S., Pays E. The 3'-terminal region of the mRNAs for VSG and procyclin can confer stage specificity to gene expression in Trypanosoma brucei. EMBO J. 1995 Jun 15;14(12):2925–2934. doi: 10.1002/j.1460-2075.1995.tb07292.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Beverley S. M., Clayton C. E. Transfection of Leishmania and Trypanosoma brucei by electroporation. Methods Mol Biol. 1993;21:333–348. doi: 10.1385/0-89603-239-6:333. [DOI] [PubMed] [Google Scholar]
  6. Blattner J., Clayton C. E. The 3'-untranslated regions from the Trypanosoma brucei phosphoglycerate kinase-encoding genes mediate developmental regulation. Gene. 1995 Aug 30;162(1):153–156. doi: 10.1016/0378-1119(95)00366-e. [DOI] [PubMed] [Google Scholar]
  7. Blattner J., Swinkels B., Dörsam H., Prospero T., Subramani S., Clayton C. Glycosome assembly in trypanosomes: variations in the acceptable degeneracy of a COOH-terminal microbody targeting signal. J Cell Biol. 1992 Dec;119(5):1129–1136. doi: 10.1083/jcb.119.5.1129. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Carruthers V. B., Cross G. A. High-efficiency clonal growth of bloodstream- and insect-form Trypanosoma brucei on agarose plates. Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8818–8821. doi: 10.1073/pnas.89.18.8818. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Carruthers V. B., van der Ploeg L. H., Cross G. A. DNA-mediated transformation of bloodstream-form Trypanosoma brucei. Nucleic Acids Res. 1993 May 25;21(10):2537–2538. doi: 10.1093/nar/21.10.2537. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Chung H. M., Lee M. G., Dietrich P., Huang J., Van der Ploeg L. H. Disruption of largest subunit RNA polymerase II genes in Trypanosoma brucei. Mol Cell Biol. 1993 Jun;13(6):3734–3743. doi: 10.1128/mcb.13.6.3734. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Chung H. M., Lee M. G., Van der Ploeg L. H. RNA polymerase I-mediated protein-coding gene expression in Trypanosoma brucei. Parasitol Today. 1992 Dec;8(12):414–418. doi: 10.1016/0169-4758(92)90194-7. [DOI] [PubMed] [Google Scholar]
  12. Clayton C. Developmental regulation of nuclear gene expression in Trypanosoma brucei. Prog Nucleic Acid Res Mol Biol. 1992;43:37–66. doi: 10.1016/s0079-6603(08)61043-0. [DOI] [PubMed] [Google Scholar]
  13. Cross G. A. Cellular and genetic aspects of antigenic variation in trypanosomes. Annu Rev Immunol. 1990;8:83–110. doi: 10.1146/annurev.iy.08.040190.000503. [DOI] [PubMed] [Google Scholar]
  14. Dammann R., Lucchini R., Koller T., Sogo J. M. Transcription in the yeast rRNA gene locus: distribution of the active gene copies and chromatin structure of their flanking regulatory sequences. Mol Cell Biol. 1995 Oct;15(10):5294–5303. doi: 10.1128/mcb.15.10.5294. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Dorn P. L., Aman R. A., Boothroyd J. C. Inhibition of protein synthesis results in super-induction of procyclin (PARP) RNA levels. Mol Biochem Parasitol. 1991 Jan;44(1):133–139. doi: 10.1016/0166-6851(91)90229-y. [DOI] [PubMed] [Google Scholar]
  16. Gibson W. C., Swinkels B. W., Borst P. Post-transcriptional control of the differential expression of phosphoglycerate kinase genes in Trypanosoma brucei. J Mol Biol. 1988 May 20;201(2):315–325. doi: 10.1016/0022-2836(88)90140-4. [DOI] [PubMed] [Google Scholar]
  17. Hehl A., Roditi I. The regulation of procyclin expression in Trypanosoma bruceli: making or breaking the rules? Parasitol Today. 1994 Nov;10(11):442–445. doi: 10.1016/0169-4758(94)90180-5. [DOI] [PubMed] [Google Scholar]
  18. Horn D., Cross G. A. A developmentally regulated position effect at a telomeric locus in Trypanosoma brucei. Cell. 1995 Nov 17;83(4):555–561. doi: 10.1016/0092-8674(95)90095-0. [DOI] [PubMed] [Google Scholar]
  19. Hotz H. R., Lorenz P., Fischer R., Krieger S., Clayton C. Role of 3'-untranslated regions in the regulation of hexose transporter mRNAs in Trypanosoma brucei. Mol Biochem Parasitol. 1995 Dec;75(1):1–14. doi: 10.1016/0166-6851(95)02503-0. [DOI] [PubMed] [Google Scholar]
  20. Hug M., Carruthers V. B., Hartmann C., Sherman D. S., Cross G. A., Clayton C. A possible role for the 3'-untranslated region in developmental regulation in Trypanosoma brucei. Mol Biochem Parasitol. 1993 Sep;61(1):87–95. doi: 10.1016/0166-6851(93)90161-p. [DOI] [PubMed] [Google Scholar]
  21. Hug M., Hotz H. R., Hartmann C., Clayton C. Hierarchies of RNA-processing signals in a trypanosome surface antigen mRNA precursor. Mol Cell Biol. 1994 Nov;14(11):7428–7435. doi: 10.1128/mcb.14.11.7428. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Janz L., Clayton C. The PARP and rRNA promoters of Trypanosoma brucei are composed of dissimilar sequence elements that are functionally interchangeable. Mol Cell Biol. 1994 Sep;14(9):5804–5811. doi: 10.1128/mcb.14.9.5804. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Koenig-Martin E., Yamage M., Roditi I. A procyclin-associated gene in Trypanosoma brucei encodes a polypeptide related to ESAG 6 and 7 proteins. Mol Biochem Parasitol. 1992 Oct;55(1-2):135–145. doi: 10.1016/0166-6851(92)90134-6. [DOI] [PubMed] [Google Scholar]
  24. LeBowitz J. H., Smith H. Q., Rusche L., Beverley S. M. Coupling of poly(A) site selection and trans-splicing in Leishmania. Genes Dev. 1993 Jun;7(6):996–1007. doi: 10.1101/gad.7.6.996. [DOI] [PubMed] [Google Scholar]
  25. Lee M. G. A foreign transcription unit in the inactivated VSG gene expression site of the procyclic form of Trypanosoma brucei and formation of large episomes in stably transformed trypanosomes. Mol Biochem Parasitol. 1995 Feb;69(2):223–238. doi: 10.1016/0166-6851(94)00186-q. [DOI] [PubMed] [Google Scholar]
  26. Lee M. G., Van der Ploeg L. H. Homologous recombination and stable transfection in the parasitic protozoan Trypanosoma brucei. Science. 1990 Dec 14;250(4987):1583–1587. doi: 10.1126/science.2177225. [DOI] [PubMed] [Google Scholar]
  27. Li J., McConkey G. A., Rogers M. J., Waters A. P., McCutchan T. R. Plasmodium: the developmentally regulated ribosome. Exp Parasitol. 1994 Jun;78(4):437–441. doi: 10.1006/expr.1994.1051. [DOI] [PubMed] [Google Scholar]
  28. Matthews K. R., Tschudi C., Ullu E. A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes. Genes Dev. 1994 Feb 15;8(4):491–501. doi: 10.1101/gad.8.4.491. [DOI] [PubMed] [Google Scholar]
  29. Mowatt M. R., Clayton C. E. Developmental regulation of a novel repetitive protein of Trypanosoma brucei. Mol Cell Biol. 1987 Aug;7(8):2838–2844. doi: 10.1128/mcb.7.8.2838. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Pays E., Coquelet H., Pays A., Tebabi P., Steinert M. Trypanosoma brucei: posttranscriptional control of the variable surface glycoprotein gene expression site. Mol Cell Biol. 1989 Sep;9(9):4018–4021. doi: 10.1128/mcb.9.9.4018. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Pays E., Coquelet H., Tebabi P., Pays A., Jefferies D., Steinert M., Koenig E., Williams R. O., Roditi I. Trypanosoma brucei: constitutive activity of the VSG and procyclin gene promoters. EMBO J. 1990 Oct;9(10):3145–3151. doi: 10.1002/j.1460-2075.1990.tb07512.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Pays E., Vanhamme L., Berberof M. Genetic controls for the expression of surface antigens in African trypanosomes. Annu Rev Microbiol. 1994;48:25–52. doi: 10.1146/annurev.mi.48.100194.000325. [DOI] [PubMed] [Google Scholar]
  33. Roditi I., Schwarz H., Pearson T. W., Beecroft R. P., Liu M. K., Richardson J. P., Bühring H. J., Pleiss J., Bülow R., Williams R. O. Procyclin gene expression and loss of the variant surface glycoprotein during differentiation of Trypanosoma brucei. J Cell Biol. 1989 Feb;108(2):737–746. doi: 10.1083/jcb.108.2.737. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Rudenko G., Blundell P. A., Dirks-Mulder A., Kieft R., Borst P. A ribosomal DNA promoter replacing the promoter of a telomeric VSG gene expression site can be efficiently switched on and off in T. brucei. Cell. 1995 Nov 17;83(4):547–553. doi: 10.1016/0092-8674(95)90094-2. [DOI] [PubMed] [Google Scholar]
  35. Rudenko G., Blundell P. A., Taylor M. C., Kieft R., Borst P. VSG gene expression site control in insect form Trypanosoma brucei. EMBO J. 1994 Nov 15;13(22):5470–5482. doi: 10.1002/j.1460-2075.1994.tb06882.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Rudenko G., Lee M. G., Van der Ploeg L. H. The PARP and VSG genes of Trypanosoma brucei do not resemble RNA polymerase II transcription units in sensitivity to Sarkosyl in nuclear run-on assays. Nucleic Acids Res. 1992 Jan 25;20(2):303–306. doi: 10.1093/nar/20.2.303. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Schnapp A., Schnapp G., Erny B., Grummt I. Function of the growth-regulated transcription initiation factor TIF-IA in initiation complex formation at the murine ribosomal gene promoter. Mol Cell Biol. 1993 Nov;13(11):6723–6732. doi: 10.1128/mcb.13.11.6723. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Schürch N., Hehl A., Vassella E., Braun R., Roditi I. Accurate polyadenylation of procyclin mRNAs in Trypanosoma brucei is determined by pyrimidine-rich elements in the intergenic regions. Mol Cell Biol. 1994 Jun;14(6):3668–3675. doi: 10.1128/mcb.14.6.3668. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Sherman D. R., Janz L., Hug M., Clayton C. Anatomy of the parp gene promoter of Trypanosoma brucei. EMBO J. 1991 Nov;10(11):3379–3386. doi: 10.1002/j.1460-2075.1991.tb04902.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Sogin M. L., Gunderson J. H., Elwood H. J., Alonso R. A., Peattie D. A. Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. Science. 1989 Jan 6;243(4887):75–77. doi: 10.1126/science.2911720. [DOI] [PubMed] [Google Scholar]
  41. Thomashow L. S., Milhausen M., Rutter W. J., Agabian N. Tubulin genes are tandemly linked and clustered in the genome of trypanosoma brucei. Cell. 1983 Jan;32(1):35–43. doi: 10.1016/0092-8674(83)90494-4. [DOI] [PubMed] [Google Scholar]
  42. Ullu E., Matthews K. R., Tschudi C. Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts. Mol Cell Biol. 1993 Jan;13(1):720–725. doi: 10.1128/mcb.13.1.720. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Urményi T. P., Van der Ploeg L. H. PARP promoter-mediated activation of a VSG expression site promoter in insect form Trypanosoma brucei. Nucleic Acids Res. 1995 Mar 25;23(6):1010–1018. doi: 10.1093/nar/23.6.1010. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Vanhamme L., Berberof M., Le Ray D., Pays E. Stimuli of differentiation regulate RNA elongation in the transcription units for the major stage-specific antigens of Trypanosoma brucei. Nucleic Acids Res. 1995 Jun 11;23(11):1862–1869. doi: 10.1093/nar/23.11.1862. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Vijayasarathy S., Ernest I., Itzhaki J. E., Sherman D., Mowatt M. R., Michels P. A., Clayton C. E. The genes encoding fructose bisphosphate aldolase in Trypanosoma brucei are interspersed with unrelated genes. Nucleic Acids Res. 1990 May 25;18(10):2967–2975. doi: 10.1093/nar/18.10.2967. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. White T. C., Rudenko G., Borst P. Three small RNAs within the 10 kb trypanosome rRNA transcription unit are analogous to domain VII of other eukaryotic 28S rRNAs. Nucleic Acids Res. 1986 Dec 9;14(23):9471–9489. doi: 10.1093/nar/14.23.9471. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Wirtz E., Clayton C. Inducible gene expression in trypanosomes mediated by a prokaryotic repressor. Science. 1995 May 26;268(5214):1179–1183. doi: 10.1126/science.7761835. [DOI] [PubMed] [Google Scholar]
  48. Wirtz E., Hartmann C., Clayton C. Gene expression mediated by bacteriophage T3 and T7 RNA polymerases in transgenic trypanosomes. Nucleic Acids Res. 1994 Sep 25;22(19):3887–3894. doi: 10.1093/nar/22.19.3887. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Ziegelbauer K., Quinten M., Schwarz H., Pearson T. W., Overath P. Synchronous differentiation of Trypanosoma brucei from bloodstream to procyclic forms in vitro. Eur J Biochem. 1990 Sep 11;192(2):373–378. doi: 10.1111/j.1432-1033.1990.tb19237.x. [DOI] [PubMed] [Google Scholar]
  50. Zomerdijk J. C., Kieft R., Borst P. Efficient production of functional mRNA mediated by RNA polymerase I in Trypanosoma brucei. Nature. 1991 Oct 24;353(6346):772–775. doi: 10.1038/353772a0. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES