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. 2000 Jan;154(1):237–246. doi: 10.1093/genetics/154.1.237

Molecular genetic analysis of Drosophila eyes absent mutants reveals an eye enhancer element.

J E Zimmerman 1, Q T Bui 1, H Liu 1, N M Bonini 1
PMCID: PMC1460909  PMID: 10628984

Abstract

The eyes absent (eya) gene is critical for normal eye development in Drosophila and is highly conserved to vertebrates. To define regions of the gene critical for eye function, we have defined the mutations in the four viable eya alleles. Two of these mutations are eye specific and undergo transvection with other mutations in the gene. These were found to be deletion mutations that remove regulatory sequence critical for eye cell expression of the gene. Two other viable alleles cause a reduced eye phenotype and affect the function of the gene in additional tissues, such as the ocelli. These mutations were found to be insertion mutations of different transposable elements within the 5' UTR of the transcript. Detailed analysis of one of these revealed that the transposable element has become subject to regulation by eye enhancer sequences of the eya gene, disrupting normal expression of EYA in the eye. More extended analysis of the deletion region in the eye-specific alleles indicated that the deleted region defines an enhancer that activates gene expression in eye progenitor cells. This enhancer is responsive to ectopic expression of the eyeless gene. This analysis has defined a critical regulatory region required for proper eye expression of the eya gene.

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Selected References

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  1. Bonini N. M., Bui Q. T., Gray-Board G. L., Warrick J. M. The Drosophila eyes absent gene directs ectopic eye formation in a pathway conserved between flies and vertebrates. Development. 1997 Dec;124(23):4819–4826. doi: 10.1242/dev.124.23.4819. [DOI] [PubMed] [Google Scholar]
  2. Bonini N. M., Leiserson W. M., Benzer S. Multiple roles of the eyes absent gene in Drosophila. Dev Biol. 1998 Apr 1;196(1):42–57. doi: 10.1006/dbio.1997.8845. [DOI] [PubMed] [Google Scholar]
  3. Bonini N. M., Leiserson W. M., Benzer S. The eyes absent gene: genetic control of cell survival and differentiation in the developing Drosophila eye. Cell. 1993 Feb 12;72(3):379–395. doi: 10.1016/0092-8674(93)90115-7. [DOI] [PubMed] [Google Scholar]
  4. Boyle M., Bonini N., DiNardo S. Expression and function of clift in the development of somatic gonadal precursors within the Drosophila mesoderm. Development. 1997 Mar;124(5):971–982. doi: 10.1242/dev.124.5.971. [DOI] [PubMed] [Google Scholar]
  5. Bucheton A., Paro R., Sang H. M., Pelisson A., Finnegan D. J. The molecular basis of I-R hybrid dysgenesis in Drosophila melanogaster: identification, cloning, and properties of the I factor. Cell. 1984 Aug;38(1):153–163. doi: 10.1016/0092-8674(84)90536-1. [DOI] [PubMed] [Google Scholar]
  6. Chen R., Amoui M., Zhang Z., Mardon G. Dachshund and eyes absent proteins form a complex and function synergistically to induce ectopic eye development in Drosophila. Cell. 1997 Dec 26;91(7):893–903. doi: 10.1016/s0092-8674(00)80481-x. [DOI] [PubMed] [Google Scholar]
  7. Chen R., Halder G., Zhang Z., Mardon G. Signaling by the TGF-beta homolog decapentaplegic functions reiteratively within the network of genes controlling retinal cell fate determination in Drosophila. Development. 1999 Feb;126(5):935–943. doi: 10.1242/dev.126.5.935. [DOI] [PubMed] [Google Scholar]
  8. Cheyette B. N., Green P. J., Martin K., Garren H., Hartenstein V., Zipursky S. L. The Drosophila sine oculis locus encodes a homeodomain-containing protein required for the development of the entire visual system. Neuron. 1994 May;12(5):977–996. doi: 10.1016/0896-6273(94)90308-5. [DOI] [PubMed] [Google Scholar]
  9. Czerny T., Halder G., Kloter U., Souabni A., Gehring W. J., Busslinger M. twin of eyeless, a second Pax-6 gene of Drosophila, acts upstream of eyeless in the control of eye development. Mol Cell. 1999 Mar;3(3):297–307. doi: 10.1016/s1097-2765(00)80457-8. [DOI] [PubMed] [Google Scholar]
  10. Desplan C. Eye development: governed by a dictator or a junta? Cell. 1997 Dec 26;91(7):861–864. doi: 10.1016/s0092-8674(00)80475-4. [DOI] [PubMed] [Google Scholar]
  11. Duncan M. K., Kos L., Jenkins N. A., Gilbert D. J., Copeland N. G., Tomarev S. I. Eyes absent: a gene family found in several metazoan phyla. Mamm Genome. 1997 Jul;8(7):479–485. doi: 10.1007/s003359900480. [DOI] [PubMed] [Google Scholar]
  12. Fawcett D. H., Lister C. K., Kellett E., Finnegan D. J. Transposable elements controlling I-R hybrid dysgenesis in D. melanogaster are similar to mammalian LINEs. Cell. 1986 Dec 26;47(6):1007–1015. doi: 10.1016/0092-8674(86)90815-9. [DOI] [PubMed] [Google Scholar]
  13. Geyer P. K., Spana C., Corces V. G. On the molecular mechanism of gypsy-induced mutations at the yellow locus of Drosophila melanogaster. EMBO J. 1986 Oct;5(10):2657–2662. doi: 10.1002/j.1460-2075.1986.tb04548.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Halder G., Callaerts P., Flister S., Walldorf U., Kloter U., Gehring W. J. Eyeless initiates the expression of both sine oculis and eyes absent during Drosophila compound eye development. Development. 1998 Jun;125(12):2181–2191. doi: 10.1242/dev.125.12.2181. [DOI] [PubMed] [Google Scholar]
  15. Halder G., Callaerts P., Gehring W. J. Induction of ectopic eyes by targeted expression of the eyeless gene in Drosophila. Science. 1995 Mar 24;267(5205):1788–1792. doi: 10.1126/science.7892602. [DOI] [PubMed] [Google Scholar]
  16. Hammond K. L., Hanson I. M., Brown A. G., Lettice L. A., Hill R. E. Mammalian and Drosophila dachshund genes are related to the Ski proto-oncogene and are expressed in eye and limb. Mech Dev. 1998 Jun;74(1-2):121–131. doi: 10.1016/s0925-4773(98)00071-9. [DOI] [PubMed] [Google Scholar]
  17. Hauck B., Gehring W. J., Walldorf U. Functional analysis of an eye specific enhancer of the eyeless gene in Drosophila. Proc Natl Acad Sci U S A. 1999 Jan 19;96(2):564–569. doi: 10.1073/pnas.96.2.564. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Hazbun T. R., Stahura F. L., Mossing M. C. Site-specific recognition by an isolated DNA-binding domain of the sine oculis protein. Biochemistry. 1997 Mar 25;36(12):3680–3686. doi: 10.1021/bi9625206. [DOI] [PubMed] [Google Scholar]
  19. Hazelett D. J., Bourouis M., Walldorf U., Treisman J. E. decapentaplegic and wingless are regulated by eyes absent and eyegone and interact to direct the pattern of retinal differentiation in the eye disc. Development. 1998 Sep;125(18):3741–3751. doi: 10.1242/dev.125.18.3741. [DOI] [PubMed] [Google Scholar]
  20. Kim J., Johnson K., Chen H. J., Carroll S., Laughon A. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Decapentaplegic. Nature. 1997 Jul 17;388(6639):304–308. doi: 10.1038/40906. [DOI] [PubMed] [Google Scholar]
  21. Leiserson W. M., Benzer S., Bonini N. M. Dual functions of the Drosophila eyes absent gene in the eye and embryo. Mech Dev. 1998 May;73(2):193–202. doi: 10.1016/s0925-4773(98)00052-5. [DOI] [PubMed] [Google Scholar]
  22. Leiserson W. M., Bonini N. M., Benzer S. Transvection at the eyes absent gene of Drosophila. Genetics. 1994 Dec;138(4):1171–1179. doi: 10.1093/genetics/138.4.1171. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Macleod K., Leprince D., Stehelin D. The ets gene family. Trends Biochem Sci. 1992 Jul;17(7):251–256. doi: 10.1016/0968-0004(92)90404-w. [DOI] [PubMed] [Google Scholar]
  24. O'Neill E. M., Rebay I., Tjian R., Rubin G. M. The activities of two Ets-related transcription factors required for Drosophila eye development are modulated by the Ras/MAPK pathway. Cell. 1994 Jul 15;78(1):137–147. doi: 10.1016/0092-8674(94)90580-0. [DOI] [PubMed] [Google Scholar]
  25. Oliver G., Mailhos A., Wehr R., Copeland N. G., Jenkins N. A., Gruss P. Six3, a murine homologue of the sine oculis gene, demarcates the most anterior border of the developing neural plate and is expressed during eye development. Development. 1995 Dec;121(12):4045–4055. doi: 10.1242/dev.121.12.4045. [DOI] [PubMed] [Google Scholar]
  26. Pignoni F., Hu B., Zavitz K. H., Xiao J., Garrity P. A., Zipursky S. L. The eye-specification proteins So and Eya form a complex and regulate multiple steps in Drosophila eye development. Cell. 1997 Dec 26;91(7):881–891. doi: 10.1016/s0092-8674(00)80480-8. [DOI] [PubMed] [Google Scholar]
  27. Quiring R., Walldorf U., Kloter U., Gehring W. J. Homology of the eyeless gene of Drosophila to the Small eye gene in mice and Aniridia in humans. Science. 1994 Aug 5;265(5173):785–789. doi: 10.1126/science.7914031. [DOI] [PubMed] [Google Scholar]
  28. Rutledge B. J., Mortin M. A., Schwarz E., Thierry-Mieg D., Meselson M. Genetic interactions of modifier genes and modifiable alleles in Drosophila melanogaster. Genetics. 1988 Jun;119(2):391–397. doi: 10.1093/genetics/119.2.391. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Scherer G., Tschudi C., Perera J., Delius H., Pirrotta V. B104, a new dispersed repeated gene family in Drosophila melanogaster and its analogies with retroviruses. J Mol Biol. 1982 May 25;157(3):435–451. doi: 10.1016/0022-2836(82)90470-3. [DOI] [PubMed] [Google Scholar]
  30. Serikaku M. A., O'Tousa J. E. sine oculis is a homeobox gene required for Drosophila visual system development. Genetics. 1994 Dec;138(4):1137–1150. doi: 10.1093/genetics/138.4.1137. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Shen W., Mardon G. Ectopic eye development in Drosophila induced by directed dachshund expression. Development. 1997 Jan;124(1):45–52. doi: 10.1242/dev.124.1.45. [DOI] [PubMed] [Google Scholar]
  32. Simon J. A., Sutton C. A., Lobell R. B., Glaser R. L., Lis J. T. Determinants of heat shock-induced chromosome puffing. Cell. 1985 Apr;40(4):805–817. doi: 10.1016/0092-8674(85)90340-x. [DOI] [PubMed] [Google Scholar]
  33. Smith P. A., Corces V. G. Drosophila transposable elements: mechanisms of mutagenesis and interactions with the host genome. Adv Genet. 1991;29:229–300. doi: 10.1016/s0065-2660(08)60109-1. [DOI] [PubMed] [Google Scholar]
  34. Staehling-Hampton K., Jackson P. D., Clark M. J., Brand A. H., Hoffmann F. M. Specificity of bone morphogenetic protein-related factors: cell fate and gene expression changes in Drosophila embryos induced by decapentaplegic but not 60A. Cell Growth Differ. 1994 Jun;5(6):585–593. [PubMed] [Google Scholar]
  35. Thummel C. S., Boulet A. M., Lipshitz H. D. Vectors for Drosophila P-element-mediated transformation and tissue culture transfection. Gene. 1988 Dec 30;74(2):445–456. doi: 10.1016/0378-1119(88)90177-1. [DOI] [PubMed] [Google Scholar]
  36. Vandendries E. R., Johnson D., Reinke R. orthodenticle is required for photoreceptor cell development in the Drosophila eye. Dev Biol. 1996 Jan 10;173(1):243–255. doi: 10.1006/dbio.1996.0020. [DOI] [PubMed] [Google Scholar]
  37. Xu P. X., Woo I., Her H., Beier D. R., Maas R. L. Mouse Eya homologues of the Drosophila eyes absent gene require Pax6 for expression in lens and nasal placode. Development. 1997 Jan;124(1):219–231. doi: 10.1242/dev.124.1.219. [DOI] [PubMed] [Google Scholar]
  38. Xu P. X., Zhang X., Heaney S., Yoon A., Michelson A. M., Maas R. L. Regulation of Pax6 expression is conserved between mice and flies. Development. 1999 Jan;126(2):383–395. doi: 10.1242/dev.126.2.383. [DOI] [PubMed] [Google Scholar]
  39. Zimmerman J. E., Bui Q. T., Steingrímsson E., Nagle D. L., Fu W., Genin A., Spinner N. B., Copeland N. G., Jenkins N. A., Bucan M. Cloning and characterization of two vertebrate homologs of the Drosophila eyes absent gene. Genome Res. 1997 Feb;7(2):128–141. doi: 10.1101/gr.7.2.128. [DOI] [PubMed] [Google Scholar]
  40. Zipursky S. L., Rubin G. M. Determination of neuronal cell fate: lessons from the R7 neuron of Drosophila. Annu Rev Neurosci. 1994;17:373–397. doi: 10.1146/annurev.ne.17.030194.002105. [DOI] [PubMed] [Google Scholar]

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