Skip to main content
Genetics logoLink to Genetics
. 2001 Jun;158(2):843–850. doi: 10.1093/genetics/158.2.843

Cytonuclear disequilibrium and genetic drift in a natural population of ponderosa pine.

R G Latta 1, Y B Linhart 1, J B Mitton 1
PMCID: PMC1461660  PMID: 11404345

Abstract

We measured the cytonuclear disequilibrium between 11 nuclear allozyme loci and both mitochondrial and chloroplast DNA haplotypes in a natural population of ponderosa pine (Pinus ponderosa, Laws). Three allozyme loci showed significant associations with mtDNA variation, while two other loci showed significant association with cpDNA. However, the absolute number of individuals involved in any of the associations was small, such that in none of the nuclear-organellar combinations was the difference between observed and expected numbers >11 individuals. Patterns of association were not consistent across loci or organellar genomes, suggesting that they are not the result of mating patterns, which would act uniformly on all loci. This pattern of disequilibria is consistent with the action of genetic drift and with existing knowledge of the structure of this population and thus does not imply the action of other evolutionary processes. The overall magnitude (normalized disequilibrium) of associations was greater for maternally inherited mtDNA than for paternally inherited cpDNA, though this difference was neither large nor significant. Such significant disequilibria involving the paternally inherited organelle indicate that not only are there a limited number of seed parents, but the effective number of pollen parents is also limited.

Full Text

The Full Text of this article is available as a PDF (215.2 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Asmussen M. A., Arnold J., Avise J. C. Definition and properties of disequilibrium statistics for associations between nuclear and cytoplasmic genotypes. Genetics. 1987 Apr;115(4):755–768. doi: 10.1093/genetics/115.4.755. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Asmussen M. A., Arnold J., Avise J. C. The effects of assortative mating and migration on cytonuclear associations in hybrid zones. Genetics. 1989 Aug;122(4):923–934. doi: 10.1093/genetics/122.4.923. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Asmussen M. A., Arnold J. The effects of admixture and population subdivision on cytonuclear disequilibria. Theor Popul Biol. 1991 Jun;39(3):273–300. doi: 10.1016/0040-5809(91)90024-a. [DOI] [PubMed] [Google Scholar]
  4. Asmussen M. A., Basten C. J. Constraints and normalized measures for cytonuclear disequilibria. Heredity (Edinb) 1996 Mar;76(Pt 3):207–214. doi: 10.1038/hdy.1996.33. [DOI] [PubMed] [Google Scholar]
  5. Asmussen M. A., Basten C. J. Sampling theory for cytonuclear disequilibria. Genetics. 1994 Dec;138(4):1351–1363. doi: 10.1093/genetics/138.4.1351. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Asmussen M. A., Orive M. E. The effects of pollen and seed migration on nuclear-dicytoplasmic systems. I. Nonrandom associations and equilibrium structure with both maternal and paternal cytoplasmic inheritance. Genetics. 2000 Jun;155(2):813–831. doi: 10.1093/genetics/155.2.813. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Clark A. G., Lyckegaard E. M. Natural selection with nuclear and cytoplasmic transmission. III. Joint analysis of segregation and mtDNA in Drosophila melanogaster. Genetics. 1988 Mar;118(3):471–481. doi: 10.1093/genetics/118.3.471. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Dong J., Wagner D. B. Paternally inherited chloroplast polymorphism in Pinus: estimation of diversity and population subdivision, and tests of disequilibrium with a maternally inherited mitochondrial polymorphism. Genetics. 1994 Mar;136(3):1187–1194. doi: 10.1093/genetics/136.3.1187. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Fu Y. X., Arnold J. Dynamics of cytonuclear disequilibria in finite populations and comparison with a two-locus nuclear system. Theor Popul Biol. 1992 Feb;41(1):1–25. doi: 10.1016/0040-5809(92)90047-w. [DOI] [PubMed] [Google Scholar]
  10. Lamb T., Avise J. C. Directional introgression of mitochondrial DNA in a hybrid population of tree frogs: The influence of mating behavior. Proc Natl Acad Sci U S A. 1986 Apr;83(8):2526–2530. doi: 10.1073/pnas.83.8.2526. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Latta R. G., Mitton J. B. A comparison of population differentiation across four classes of gene marker in limber pine (Pinus flexilis James). Genetics. 1997 Jul;146(3):1153–1163. doi: 10.1093/genetics/146.3.1153. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. McCauley D. E. Contrasting the distribution of chloroplast DNA and allozyme polymorphism among local populations of Silene alba: implications for studies of gene flow in plants. Proc Natl Acad Sci U S A. 1994 Aug 16;91(17):8127–8131. doi: 10.1073/pnas.91.17.8127. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Orive M. E., Asmussen M. A. The effects of pollen and seed migration on nuclear-dicytoplasmic systems. II. A new method for estimating plant gene flow from joint nuclear-cytoplasmic data. Genetics. 2000 Jun;155(2):833–854. doi: 10.1093/genetics/155.2.833. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Schnabel A., Asmussen M. A. Definition and properties of disequilibria within nuclear-mitochondrial-chloroplast and other nuclear-dicytoplasmic systems. Genetics. 1989 Sep;123(1):199–215. doi: 10.1093/genetics/123.1.199. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Zouros E., Freeman K. R., Ball A. O., Pogson G. H. Direct evidence for extensive paternal mitochondrial DNA inheritance in the marine mussel Mytilus. Nature. 1992 Oct 1;359(6394):412–414. doi: 10.1038/359412a0. [DOI] [PubMed] [Google Scholar]

Articles from Genetics are provided here courtesy of Oxford University Press

RESOURCES