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. 1996 Oct 15;24(20):4096–4097. doi: 10.1093/nar/24.20.4096

Replicon rescue: a novel strategy to clone the genomic DNA flanking insertions of integrating shuttle vector DNA.

T L McMahon 1, Z Wilczynska 1, C Barth 1, D J Fraser 1, L Pontes 1, P R Fisher 1
PMCID: PMC146182  PMID: 8918819

Abstract

A novel cloning strategy, replicon rescue, was developed for cloning genes disrupted by plasmid insertions. After ligation to a tetracycline resistance cassette, fragments containing a bacterial origin of replication from the insertion are recovered in Escherichia coli because they replicate autonomously. Restriction enzymes for cloning are so chosen that the only legitimate two fragment ligation yielding TetR clones involves a fragment spanning the boundary of the insertion. Replicon rescue was used successfully firstly in a test system to clone the chromosomal orl from a Klebsiella aerogenes strain, and secondly to recover a disrupted gene from a phototaxis-deficient mutant of Dictyostelium.

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Selected References

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  1. Adachi H., Hasebe T., Yoshinaga K., Ohta T., Sutoh K. Isolation of Dictyostelium discoideum cytokinesis mutants by restriction enzyme-mediated integration of the blasticidin S resistance marker. Biochem Biophys Res Commun. 1994 Dec 30;205(3):1808–1814. doi: 10.1006/bbrc.1994.2880. [DOI] [PubMed] [Google Scholar]
  2. Chang W. T., Gross J. D., Newell P. C. Trapping developmental promoters in Dictyostelium. Plasmid. 1995 Nov;34(3):175–183. doi: 10.1006/plas.1995.0003. [DOI] [PubMed] [Google Scholar]
  3. Cole R. A., Williams K. L. Insertion of transformation vector DNA into different chromosomal sites of Dictyostelium discoideum as determined by pulse field electrophoresis. Nucleic Acids Res. 1988 Jun 10;16(11):4891–4902. doi: 10.1093/nar/16.11.4891. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Hildebrandt M., Nellen W. Library-independent cloning of genomic fragments adjacent to vector integration sites: isolation of the EB4-PSV gene from a Dictyostelium gene disruption transformant. Biochem Biophys Res Commun. 1991 Dec 16;181(2):884–888. doi: 10.1016/0006-291x(91)91273-f. [DOI] [PubMed] [Google Scholar]
  5. Kuspa A., Loomis W. F. REMI-RFLP mapping in the Dictyostelium genome. Genetics. 1994 Nov;138(3):665–674. doi: 10.1093/genetics/138.3.665. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Maniak M., Nellen W. pISAR, a tool for cloning genomic sequences adjacent to the site of vector integration. Nucleic Acids Res. 1989 Jun 26;17(12):4894–4894. doi: 10.1093/nar/17.12.4894. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Nellen W., Firtel R. A. High-copy-number transformants and co-transformation in Dictyostelium. Gene. 1985;39(2-3):155–163. doi: 10.1016/0378-1119(85)90309-9. [DOI] [PubMed] [Google Scholar]
  8. Nellen W., Silan C., Firtel R. A. DNA-mediated transformation in Dictyostelium discoideum: regulated expression of an actin gene fusion. Mol Cell Biol. 1984 Dec;4(12):2890–2898. doi: 10.1128/mcb.4.12.2890. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Wilczynska Z., Fisher P. R. Analysis of a complex plasmid insertion in a phototaxis-deficient transformant of Dictyostelium discoideum selected on a Micrococcus luteus lawn. Plasmid. 1994 Sep;32(2):182–194. doi: 10.1006/plas.1994.1054. [DOI] [PubMed] [Google Scholar]
  10. Witke W., Nellen W., Noegel A. Homologous recombination in the Dictyostelium alpha-actinin gene leads to an altered mRNA and lack of the protein. EMBO J. 1987 Dec 20;6(13):4143–4148. doi: 10.1002/j.1460-2075.1987.tb02760.x. [DOI] [PMC free article] [PubMed] [Google Scholar]

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