Skip to main content
Genetics logoLink to Genetics
. 2003 Jun;164(2):829–833. doi: 10.1093/genetics/164.2.829

False discovery rate in linkage and association genome screens for complex disorders.

Chiara Sabatti 1, Susan Service 1, Nelson Freimer 1
PMCID: PMC1462572  PMID: 12807801

Abstract

We explore the implications of the false discovery rate (FDR) controlling procedure in disease gene mapping. With the aid of simulations, we show how, under models commonly used, the simple step-down procedure introduced by Benjamini and Hochberg controls the FDR for the dependent tests on which linkage and association genome screens are based. This adaptive multiple comparison procedure may offer an important tool for mapping susceptibility genes for complex diseases.

Full Text

The Full Text of this article is available as a PDF (77.2 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Dupuis J., Brown P. O., Siegmund D. Statistical methods for linkage analysis of complex traits from high-resolution maps of identity by descent. Genetics. 1995 Jun;140(2):843–856. doi: 10.1093/genetics/140.2.843. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Feingold E., Brown P. O., Siegmund D. Gaussian models for genetic linkage analysis using complete high-resolution maps of identity by descent. Am J Hum Genet. 1993 Jul;53(1):234–251. [PMC free article] [PubMed] [Google Scholar]
  3. Lander E. S., Botstein D. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics. 1989 Jan;121(1):185–199. doi: 10.1093/genetics/121.1.185. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Lander E. S., Botstein D. Strategies for studying heterogeneous genetic traits in humans by using a linkage map of restriction fragment length polymorphisms. Proc Natl Acad Sci U S A. 1986 Oct;83(19):7353–7357. doi: 10.1073/pnas.83.19.7353. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Lander E., Kruglyak L. Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nat Genet. 1995 Nov;11(3):241–247. doi: 10.1038/ng1195-241. [DOI] [PubMed] [Google Scholar]
  6. Ophoff Roel A., Escamilla Michael A., Service Susan K., Spesny Mitzi, Meshi Dar B., Poon Wingman, Molina Julio, Fournier Eduardo, Gallegos Alvaro, Mathews Carol. Genomewide linkage disequilibrium mapping of severe bipolar disorder in a population isolate. Am J Hum Genet. 2002 Jul 15;71(3):565–574. doi: 10.1086/342291. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Service S. K., Lang D. W., Freimer N. B., Sandkuijl L. A. Linkage-disequilibrium mapping of disease genes by reconstruction of ancestral haplotypes in founder populations. Am J Hum Genet. 1999 Jun;64(6):1728–1738. doi: 10.1086/302398. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Weller J. I., Song J. Z., Heyen D. W., Lewin H. A., Ron M. A new approach to the problem of multiple comparisons in the genetic dissection of complex traits. Genetics. 1998 Dec;150(4):1699–1706. doi: 10.1093/genetics/150.4.1699. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Genetics are provided here courtesy of Oxford University Press

RESOURCES