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. 2003 Jul;164(3):1237–1240. doi: 10.1093/genetics/164.3.1237

On the genomic location of the exuperantia1 gene in Drosophila miranda: the limits of in situ hybridization experiments.

Doris Bachtrog 1, Brian Charlesworth 1
PMCID: PMC1462621  PMID: 12871928

Abstract

In situ hybridization to Drosophila polytene chromosomes is a powerful tool for determining the chromosomal location of genes. Using in situ hybridization experiments, Yi and Charlesworth recently reported the transposition of the exuperantia1 gene (exu1) from a neo-sex chromosome to the ancestral X chromosome of Drosophila miranda, close to exuperantia2 (exu2). By characterizing sequences flanking exu1, however, we found the position of exu1 to be conserved on the neo-sex chromosome. Further, the exu2 gene was found to be tandemly duplicated on the X chromosome of D. miranda. The misleading hybridization signal of exu1 may be caused by multiple copies of exu2, which interfere with the hybridization of the exu1 probe to its genomic position on the neo-X chromosome. This suggests that flanking DNA should be used to confirm the positions of members of gene families.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bachtrog Doris. Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda. Mol Biol Evol. 2003 Feb;20(2):173–181. doi: 10.1093/molbev/msg035. [DOI] [PubMed] [Google Scholar]
  2. Bachtrog Doris. Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila. Nat Genet. 2003 Jun;34(2):215–219. doi: 10.1038/ng1164. [DOI] [PubMed] [Google Scholar]
  3. Luk S. K., Kilpatrick M., Kerr K., Macdonald P. M. Components acting in localization of bicoid mRNA are conserved among Drosophila species. Genetics. 1994 Jun;137(2):521–530. doi: 10.1093/genetics/137.2.521. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Ranz J. M., Casals F., Ruiz A. How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila. Genome Res. 2001 Feb;11(2):230–239. doi: 10.1101/gr.162901. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Segarra C., Ribó G., Aguadé M. Differentiation of Muller's chromosomal elements D and E in the obscura group of Drosophila. Genetics. 1996 Sep;144(1):139–146. doi: 10.1093/genetics/144.1.139. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Yi S., Charlesworth B. A selective sweep associated with a recent gene transposition in Drosophila miranda. Genetics. 2000 Dec;156(4):1753–1763. doi: 10.1093/genetics/156.4.1753. [DOI] [PMC free article] [PubMed] [Google Scholar]

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