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. 1997 Jan 1;25(1):222–225. doi: 10.1093/nar/25.1.222

Recent enhancements to the Blocks Database servers.

J G Henikoff 1, S Pietrokovski 1, S Henikoff 1
PMCID: PMC146414  PMID: 9016540

Abstract

The Blocks Database contains multiple alignments of conserved regions in protein families which can be searched by e-mail (blocks@blocks.fhcrc.org) and World Wide Web (http://blocks.fhcrc.org/ ) servers to classify protein and nucleotide sequences. Recent enhancements to the servers include: (i) improved calculation of position-specific scoring matrices from blocks; (ii) availability of the Prints protein fingerprint database for searching in Blocks format; (iii) a representative sequence biased towards the Blocks of a protein family; (iv) a tree constructed from the Blocks of a protein family; (v) links to related World Wide Web pages for a family; and (vi) the new Local Alignment of Multiple Alignments (LAMA) method to search a block against a database of blocks.

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Selected References

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