Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1997 May 1;25(9):1809–1816. doi: 10.1093/nar/25.9.1809

Role of NRF-1 in bidirectional transcription of the human GPAT-AIRC purine biosynthesis locus.

S Chen 1, P L Nagy 1, H Zalkin 1
PMCID: PMC146651  PMID: 9108165

Abstract

GPAT and AIRC encode enzymes for steps one and six plus seven respectively in the pathway for de novo purine nucleotide synthesis in vertebrates. The human GPAT and AIRC genes are divergently transcribed from a 558 bp intergenic promoter region. Cis-acting sites and transcription factors important for bidirectional expression were identified. A cluster of sites between nt 215 and 260 are essential, although not sufficient, for expression of both genes. Two proteins from HepG2 cell nuclear extract, identified as NRF-1 and Sp1, bound to the promoter at sites within the 215-260 region. NRF-1 was required for stable binding of Sp1. Deletion of a 5'promoter region including nt 215-260 resulted in decreased expression of GPAT and AIRC in transfected HepG2 cells. The decreased expression was accounted for by point mutations in an NRF-1 site and either of two flanking sites for Sp1. These transcription factors account in part for the coordinated expression of human GPAT and AIRC.

Full Text

The Full Text of this article is available as a PDF (172.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  2. Brayton K. A., Chen Z., Zhou G., Nagy P. L., Gavalas A., Trent J. M., Deaven L. L., Dixon J. E., Zalkin H. Two genes for de novo purine nucleotide synthesis on human chromosome 4 are closely linked and divergently transcribed. J Biol Chem. 1994 Feb 18;269(7):5313–5321. [PubMed] [Google Scholar]
  3. Chau C. M., Evans M. J., Scarpulla R. C. Nuclear respiratory factor 1 activation sites in genes encoding the gamma-subunit of ATP synthase, eukaryotic initiation factor 2 alpha, and tyrosine aminotransferase. Specific interaction of purified NRF-1 with multiple target genes. J Biol Chem. 1992 Apr 5;267(10):6999–7006. [PubMed] [Google Scholar]
  4. Chirgwin J. M., Przybyla A. E., MacDonald R. J., Rutter W. J. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 1979 Nov 27;18(24):5294–5299. doi: 10.1021/bi00591a005. [DOI] [PubMed] [Google Scholar]
  5. Crozat A., Aman P., Mandahl N., Ron D. Fusion of CHOP to a novel RNA-binding protein in human myxoid liposarcoma. Nature. 1993 Jun 17;363(6430):640–644. doi: 10.1038/363640a0. [DOI] [PubMed] [Google Scholar]
  6. Dignam J. D., Lebovitz R. M., Roeder R. G. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 1983 Mar 11;11(5):1475–1489. doi: 10.1093/nar/11.5.1475. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Doherty A. J., Ashford S. R., Brannigan J. A., Wigley D. B. A superior host strain for the over-expression of cloned genes using the T7 promoter based vectors. Nucleic Acids Res. 1995 Jun 11;23(11):2074–2075. doi: 10.1093/nar/23.11.2074. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Edlund T., Walker M. D., Barr P. J., Rutter W. J. Cell-specific expression of the rat insulin gene: evidence for role of two distinct 5' flanking elements. Science. 1985 Nov 22;230(4728):912–916. doi: 10.1126/science.3904002. [DOI] [PubMed] [Google Scholar]
  9. Evans M. J., Scarpulla R. C. Interaction of nuclear factors with multiple sites in the somatic cytochrome c promoter. Characterization of upstream NRF-1, ATF, and intron Sp1 recognition sequences. J Biol Chem. 1989 Aug 25;264(24):14361–14368. [PubMed] [Google Scholar]
  10. Evans M. J., Scarpulla R. C. NRF-1: a trans-activator of nuclear-encoded respiratory genes in animal cells. Genes Dev. 1990 Jun;4(6):1023–1034. doi: 10.1101/gad.4.6.1023. [DOI] [PubMed] [Google Scholar]
  11. Fischer G., Schmidt C., Opitz J., Cully Z., Kühn K., Pöschl E. Identification of a novel sequence element in the common promoter region of human collagen type IV genes, involved in the regulation of divergent transcription. Biochem J. 1993 Jun 15;292(Pt 3):687–695. doi: 10.1042/bj2920687. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Gavalas A., Dixon J. E., Brayton K. A., Zalkin H. Coexpression of two closely linked avian genes for purine nucleotide synthesis from a bidirectional promoter. Mol Cell Biol. 1993 Aug;13(8):4784–4792. doi: 10.1128/mcb.13.8.4784. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Gavalas A., Zalkin H. Analysis of the chicken GPAT/AIRC bidirectional promoter for de novo purine nucleotide synthesis. J Biol Chem. 1995 Feb 3;270(5):2403–2410. doi: 10.1074/jbc.270.5.2403. [DOI] [PubMed] [Google Scholar]
  14. Genersch E., Eckerskorn C., Lottspeich F., Herzog C., Kühn K., Pöschl E. Purification of the sequence-specific transcription factor CTCBF, involved in the control of human collagen IV genes: subunits with homology to Ku antigen. EMBO J. 1995 Feb 15;14(4):791–800. doi: 10.1002/j.1460-2075.1995.tb07057.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Ghosh D. Status of the transcription factors database (TFD). Nucleic Acids Res. 1993 Jul 1;21(13):3117–3118. doi: 10.1093/nar/21.13.3117. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Ghosh D. TFD: the transcription factors database. Nucleic Acids Res. 1992 May 11;20 (Suppl):2091–2093. doi: 10.1093/nar/20.suppl.2091. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Gidoni D., Kadonaga J. T., Barrera-Saldaña H., Takahashi K., Chambon P., Tjian R. Bidirectional SV40 transcription mediated by tandem Sp1 binding interactions. Science. 1985 Nov 1;230(4725):511–517. doi: 10.1126/science.2996137. [DOI] [PubMed] [Google Scholar]
  18. Gnirke A., Barnes T. S., Patterson D., Schild D., Featherstone T., Olson M. V. Cloning and in vivo expression of the human GART gene using yeast artificial chromosomes. EMBO J. 1991 Jul;10(7):1629–1634. doi: 10.1002/j.1460-2075.1991.tb07685.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Grandoni J. A., Switzer R. L., Makaroff C. A., Zalkin H. Evidence that the iron-sulfur cluster of Bacillus subtilis glutamine phosphoribosylpyrophosphate amidotransferase determines stability of the enzyme to degradation in vivo. J Biol Chem. 1989 Apr 15;264(11):6058–6064. [PubMed] [Google Scholar]
  20. Grichnik J. M., French B. A., Schwartz R. J. The chicken skeletal alpha-actin gene promoter region exhibits partial dyad symmetry and a capacity to drive bidirectional transcription. Mol Cell Biol. 1988 Nov;8(11):4587–4597. doi: 10.1128/mcb.8.11.4587. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Itakura M., Holmes E. W. Human amidophosphoribosyltransferase. An oxygen-sensitive iron-sulfur protein. J Biol Chem. 1979 Jan 25;254(2):333–338. [PubMed] [Google Scholar]
  22. Iwahana H., Honda S., Tsujisawa T., Takahashi Y., Adzuma K., Katashima R., Yamaoka T., Moritani M., Yoshimoto K., Itakura M. Rat genomic structure of amidophosphoribosyltransferase, cDNA sequence of aminoimidazole ribonucleotide carboxylase, and cell cycle-dependent expression of these two physically linked genes. Biochim Biophys Acta. 1995 Apr 26;1261(3):369–380. doi: 10.1016/0167-4781(95)00036-g. [DOI] [PubMed] [Google Scholar]
  23. Iwahana H., Yamaoka T., Mizutani M., Mizusawa N., Ii S., Yoshimoto K., Itakura M. Molecular cloning of rat amidophosphoribosyltransferase. J Biol Chem. 1993 Apr 5;268(10):7225–7237. [PubMed] [Google Scholar]
  24. Kadonaga J. T. Purification of sequence-specific binding proteins by DNA affinity chromatography. Methods Enzymol. 1991;208:10–23. doi: 10.1016/0076-6879(91)08004-2. [DOI] [PubMed] [Google Scholar]
  25. Lennard A. C., Fried M. The bidirectional promoter of the divergently transcribed mouse Surf-1 and Surf-2 genes. Mol Cell Biol. 1991 Mar;11(3):1281–1294. doi: 10.1128/mcb.11.3.1281. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Lewis A. L., Guicherit O. M., Datta S. K., Hanten G. R., Kellems R. E. Structure and expression of the murine muscle adenylosuccinate synthetase gene. J Biol Chem. 1996 Sep 13;271(37):22647–22656. doi: 10.1074/jbc.271.37.22647. [DOI] [PubMed] [Google Scholar]
  27. Ohshige T., Takechi S., Nakayama T. Presence of particular transcription regulatory elements in the 5'-intergenic region shared by the chicken H2A-III and H2B-V pair. Gene. 1993 Sep 15;131(2):193–199. doi: 10.1016/0378-1119(93)90293-c. [DOI] [PubMed] [Google Scholar]
  28. Schmidt C., Fischer G., Kadner H., Genersch E., Kühn K., Pöschl E. Differential effects of DNA-binding proteins on bidirectional transcription from the common promoter region of human collagen type IV genes COL4A1 and COL4A2. Biochim Biophys Acta. 1993 Jul 18;1174(1):1–10. doi: 10.1016/0167-4781(93)90085-r. [DOI] [PubMed] [Google Scholar]
  29. Seed B., Sheen J. Y. A simple phase-extraction assay for chloramphenicol acyltransferase activity. Gene. 1988 Jul 30;67(2):271–277. doi: 10.1016/0378-1119(88)90403-9. [DOI] [PubMed] [Google Scholar]
  30. Seelan R. S., Gopalakrishnan L., Scarpulla R. C., Grossman L. I. Cytochrome c oxidase subunit VIIa liver isoform. Characterization and identification of promoter elements in the bovine gene. J Biol Chem. 1996 Jan 26;271(4):2112–2120. doi: 10.1074/jbc.271.4.2112. [DOI] [PubMed] [Google Scholar]
  31. Shimada T., Fujii H., Lin H. A 165-base pair sequence between the dihydrofolate reductase gene and the divergently transcribed upstream gene is sufficient for bidirectional transcriptional activity. J Biol Chem. 1989 Dec 5;264(34):20171–20174. [PubMed] [Google Scholar]
  32. Virbasius C. A., Virbasius J. V., Scarpulla R. C. NRF-1, an activator involved in nuclear-mitochondrial interactions, utilizes a new DNA-binding domain conserved in a family of developmental regulators. Genes Dev. 1993 Dec;7(12A):2431–2445. doi: 10.1101/gad.7.12a.2431. [DOI] [PubMed] [Google Scholar]
  33. Zalkin H., Dixon J. E. De novo purine nucleotide biosynthesis. Prog Nucleic Acid Res Mol Biol. 1992;42:259–287. doi: 10.1016/s0079-6603(08)60578-4. [DOI] [PubMed] [Google Scholar]
  34. Zhu Q. S., Chen K., Shih J. C. Bidirectional promoter of human monoamine oxidase A (MAO A) controlled by transcription factor Sp1. J Neurosci. 1994 Dec;14(12):7393–7403. doi: 10.1523/JNEUROSCI.14-12-07393.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES