Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1997 Jun 15;25(12):2375–2380. doi: 10.1093/nar/25.12.2375

Demethylation of DNA by purified chick embryo 5-methylcytosine-DNA glycosylase requires both protein and RNA.

M Frémont 1, M Siegmann 1, S Gaulis 1, R Matthies 1, D Hess 1, J P Jost 1
PMCID: PMC146753  PMID: 9171088

Abstract

We have previously purified and characterized a 5-methylcytosine (5-MeC)-DNA glycosylase from 12 day old chick embryos [Jost,J.P. et al. (1995) J. Biol. Chem. 270, 9734-9739]. The activity of the purified enzyme is abolished upon treatment with proteinase K and ribonuclease A. RNA copurifies with 5-MeC-DNA glycosylase activity throughout all chromatographic steps and preparative gel electrophoresis. RNA with a length of approximately 300-500 nucleotides was isolated from the gel purified enzyme. Upon extensive treatment with proteinase K, the gel eluted and labeled RNA did not show any significant change in molecular mass. The purified RNA incubated alone or in the presence of Mg2+and deoxyribonucleotide phosphates had no 5-MeC-DNA glycosylase or demethylating activities. However, activity of 5-MeC-DNA glycosylase could be restored when the purified RNA was incubated with the inactive protein, free of RNA.

Full Text

The Full Text of this article is available as a PDF (118.1 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bauw G., Van Damme J., Puype M., Vandekerckhove J., Gesser B., Ratz G. P., Lauridsen J. B., Celis J. E. Protein-electroblotting and -microsequencing strategies in generating protein data bases from two-dimensional gels. Proc Natl Acad Sci U S A. 1989 Oct;86(20):7701–7705. doi: 10.1073/pnas.86.20.7701. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Gaspar N. J., Kinzy T. G., Scherer B. J., Hümbelin M., Hershey J. W., Merrick W. C. Translation initiation factor eIF-2. Cloning and expression of the human cDNA encoding the gamma-subunit. J Biol Chem. 1994 Feb 4;269(5):3415–3422. [PubMed] [Google Scholar]
  3. Greider C. W., Blackburn E. H. The telomere terminal transferase of Tetrahymena is a ribonucleoprotein enzyme with two kinds of primer specificity. Cell. 1987 Dec 24;51(6):887–898. doi: 10.1016/0092-8674(87)90576-9. [DOI] [PubMed] [Google Scholar]
  4. Guerrier-Takada C., Gardiner K., Marsh T., Pace N., Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell. 1983 Dec;35(3 Pt 2):849–857. doi: 10.1016/0092-8674(83)90117-4. [DOI] [PubMed] [Google Scholar]
  5. Herschlag D., Cech T. R. DNA cleavage catalysed by the ribozyme from Tetrahymena. Nature. 1990 Mar 29;344(6265):405–409. doi: 10.1038/344405a0. [DOI] [PubMed] [Google Scholar]
  6. Hofsteenge J., Kieffer B., Matthies R., Hemmings B. A., Stone S. R. Amino acid sequence of the ribonuclease inhibitor from porcine liver reveals the presence of leucine-rich repeats. Biochemistry. 1988 Nov 15;27(23):8537–8544. doi: 10.1021/bi00423a006. [DOI] [PubMed] [Google Scholar]
  7. Jost J. P., Jost Y. C. Transient DNA demethylation in differentiating mouse myoblasts correlates with higher activity of 5-methyldeoxycytidine excision repair. J Biol Chem. 1994 Apr 1;269(13):10040–10043. [PubMed] [Google Scholar]
  8. Jost J. P. Nuclear extracts of chicken embryos promote an active demethylation of DNA by excision repair of 5-methyldeoxycytidine. Proc Natl Acad Sci U S A. 1993 May 15;90(10):4684–4688. doi: 10.1073/pnas.90.10.4684. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Jost J. P., Siegmann M., Sun L., Leung R. Mechanisms of DNA demethylation in chicken embryos. Purification and properties of a 5-methylcytosine-DNA glycosylase. J Biol Chem. 1995 Apr 28;270(17):9734–9739. doi: 10.1074/jbc.270.17.9734. [DOI] [PubMed] [Google Scholar]
  10. Li E., Bestor T. H., Jaenisch R. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell. 1992 Jun 12;69(6):915–926. doi: 10.1016/0092-8674(92)90611-f. [DOI] [PubMed] [Google Scholar]
  11. Mayer R. E., Hendrix P., Cron P., Matthies R., Stone S. R., Goris J., Merlevede W., Hofsteenge J., Hemmings B. A. Structure of the 55-kDa regulatory subunit of protein phosphatase 2A: evidence for a neuronal-specific isoform. Biochemistry. 1991 Apr 16;30(15):3589–3597. doi: 10.1021/bi00229a001. [DOI] [PubMed] [Google Scholar]
  12. Mörl M., Niemer I., Schmelzer C. New reactions catalyzed by a group II intron ribozyme with RNA and DNA substrates. Cell. 1992 Sep 4;70(5):803–810. doi: 10.1016/0092-8674(92)90313-2. [DOI] [PubMed] [Google Scholar]
  13. Neddermann P., Jiricny J. The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells. J Biol Chem. 1993 Oct 5;268(28):21218–21224. [PubMed] [Google Scholar]
  14. Razin A., Kafri T. DNA methylation from embryo to adult. Prog Nucleic Acid Res Mol Biol. 1994;48:53–81. doi: 10.1016/s0079-6603(08)60853-3. [DOI] [PubMed] [Google Scholar]
  15. Robertson D. L., Joyce G. F. Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature. 1990 Mar 29;344(6265):467–468. doi: 10.1038/344467a0. [DOI] [PubMed] [Google Scholar]
  16. Smith D., Pace N. R. Multiple magnesium ions in the ribonuclease P reaction mechanism. Biochemistry. 1993 May 25;32(20):5273–5281. doi: 10.1021/bi00071a001. [DOI] [PubMed] [Google Scholar]
  17. Steinberg R. A. Enzymic removal of 5-methylcytosine from poly(dG-5-methyl-dC) by HeLa cell nuclear extracts is not by a DNA glycosylase. Nucleic Acids Res. 1995 May 11;23(9):1621–1624. doi: 10.1093/nar/23.9.1621. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Stringer E. A., Chaudhuri A., Maitra U. Purified eukaryotic initiation factor 2 from calf liver consists of two polypeptide chains of 48,000 and 38,000 daltons. J Biol Chem. 1979 Aug 10;254(15):6845–6848. [PubMed] [Google Scholar]
  19. Vairapandi M., Duker N. J. Enzymic removal of 5-methylcytosine from DNA by a human DNA-glycosylase. Nucleic Acids Res. 1993 Nov 25;21(23):5323–5327. doi: 10.1093/nar/21.23.5323. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Weiss A., Keshet I., Razin A., Cedar H. DNA demethylation in vitro: involvement of RNA. Cell. 1996 Sep 6;86(5):709–718. doi: 10.1016/s0092-8674(00)80146-4. [DOI] [PubMed] [Google Scholar]
  21. Wong T. W., Clayton D. A. DNA primase of human mitochondria is associated with structural RNA that is essential for enzymatic activity. Cell. 1986 Jun 20;45(6):817–825. doi: 10.1016/0092-8674(86)90556-8. [DOI] [PubMed] [Google Scholar]
  22. Zimmerly S., Guo H., Eskes R., Yang J., Perlman P. S., Lambowitz A. M. A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility. Cell. 1995 Nov 17;83(4):529–538. doi: 10.1016/0092-8674(95)90092-6. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES