Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1997 Sep 15;25(18):3747–3748. doi: 10.1093/nar/25.18.3747

Fluorescence-, isotope- or biotin-labeling of the 5 '-end of single-stranded DNA/RNA using T4 RNA ligase.

Y Kinoshita 1, K Nishigaki 1, Y Husimi 1
PMCID: PMC146945  PMID: 9278501

Abstract

A rapid 5'-labeling method of single-stranded DNA/RNA was developed, which is based on the utilization of an adenylated intermediate in the reaction of T4 RNA ligase. This method is commonly useful for fluorescence-, isotope- or biotin-labeling of the 5'-ends of both oligo- and polynucleotides.

Full Text

The Full Text of this article is available as a PDF (43.9 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bayer E. A., Wilchek M. Protein biotinylation. Methods Enzymol. 1990;184:138–160. doi: 10.1016/0076-6879(90)84268-l. [DOI] [PubMed] [Google Scholar]
  2. Di Mauro E., Costanzo G., Negri R. One-lane chemical sequencing of PCR amplified DNA: the use of terminal transferase and of the base analogue inosine. Nucleic Acids Res. 1994 Sep 11;22(18):3811–3812. doi: 10.1093/nar/22.18.3811. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Igloi G. L., Schiefermayr E. Enzymatic addition of fluorescein- or biotin-riboUTP to oligonucleotides results in primers suitable for DNA sequencing and PCR. Biotechniques. 1993 Sep;15(3):486-8, 490-2, 494-7. [PubMed] [Google Scholar]
  4. Kempe T., Sundquist W. I., Chow F., Hu S. L. Chemical and enzymatic biotin-labeling of oligodeoxyribonucleotides. Nucleic Acids Res. 1985 Jan 11;13(1):45–57. doi: 10.1093/nar/13.1.45. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Kinoshita Y., Nishigaki K. Unexpectedly general replaceability of ATP in ATP-requiring enzymes. J Biochem. 1997 Jul;122(1):205–211. doi: 10.1093/oxfordjournals.jbchem.a021730. [DOI] [PubMed] [Google Scholar]
  6. McGregor A., Rao M. V., Duckworth G., Stockley P. G., Connolly B. A. Preparation of oligoribonucleotides containing 4-thiouridine using Fpmp chemistry. Photo-crosslinking to RNA binding proteins using 350 nm irradiation. Nucleic Acids Res. 1996 Aug 15;24(16):3173–3180. doi: 10.1093/nar/24.16.3173. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Olejnik J., Krzymańska-Olejnik E., Rothschild K. J. Photocleavable biotin phosphoramidite for 5'-end-labeling, affinity purification and phosphorylation of synthetic oligonucleotides. Nucleic Acids Res. 1996 Jan 15;24(2):361–366. doi: 10.1093/nar/24.2.361. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Paulsen H., Wintermeyer W. Incorporation of 1,N6-ethenoadenosine into the 3' terminus of tRNA using T4 RNA ligase. 2. Preparation and ribosome interaction of fluorescent Escherichia coli tRNAMetf. Eur J Biochem. 1984 Jan 2;138(1):125–130. doi: 10.1111/j.1432-1033.1984.tb07890.x. [DOI] [PubMed] [Google Scholar]
  9. Schott H., Schrade H. Single-step elongation of oligodeoxynucleotides using terminal deoxynucleotidyl transferase. Eur J Biochem. 1984 Sep 17;143(3):613–620. doi: 10.1111/j.1432-1033.1984.tb08414.x. [DOI] [PubMed] [Google Scholar]
  10. Sigurdson S. T., Eckstein F. Site specific labelling of sugar residues in oligoribonucleotides: reactions of aliphatic isocyanates with 2' amino groups. Nucleic Acids Res. 1996 Aug 15;24(16):3129–3133. doi: 10.1093/nar/24.16.3129. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Sugino A., Snoper T. J., Cozzarelli N. R. Bacteriophage T4 RNA ligase. Reaction intermediates and interaction of substrates. J Biol Chem. 1977 Mar 10;252(5):1732–1738. [PubMed] [Google Scholar]
  12. Zhang X. H., Chiang V. L. Single-stranded DNA ligation by T4 RNA ligase for PCR cloning of 5'-noncoding fragments and coding sequence of a specific gene. Nucleic Acids Res. 1996 Mar 1;24(5):990–991. doi: 10.1093/nar/24.5.990. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES