Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1998 Jan 1;26(1):198–199. doi: 10.1093/nar/26.1.198

Databases and software for the analysis of mutations in the human p53 gene, human hprt gene and both the lacI and lacZ gene in transgenic rodents.

N F Cariello 1, G R Douglas 1, N J Gorelick 1, D W Hart 1, J D Wilson 1, T Soussi 1
PMCID: PMC147201  PMID: 9399835

Abstract

We have created databases and software applications for the analysis of DNA mutations at the human p53 gene, the human hprt gene and both the rodent transgenic lacI and lacZ loci. The databases themselves are stand-alone dBASE files and the software for analysis of the databases runs on IBM-compatible computers with Microsoft Windows. Each database has a separate software analysis program. The software created for these databases permit the filtering, ordering, report generation and display of information in the database. In addition, a significant number of routines have been developed for the analysis of single base substitutions. One method of obtaining the databases and software is via the World Wide Web. Open the following home page with a Web Browser: http://sunsite.unc.edu/dnam/mainpage. html . Alternatively, the databases and programs are available via public FTP from: anonymous@sunsite.unc.edu. There is no password required to enter the system. The databases and software are found beneath the subdirectory: pub/academic/biology/dna-mutations. Two other programs are available at the site, a program for comparison of mutational spectra and a program for entry of mutational data into a relational database.

Full Text

The Full Text of this article is available as a PDF (27.5 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Albertini R. J., O'Neill J. P., Nicklas J. A., Heintz N. H., Kelleher P. C. Alterations of the hprt gene in human in vivo-derived 6-thioguanine-resistant T lymphocytes. Nature. 1985 Jul 25;316(6026):369–371. doi: 10.1038/316369a0. [DOI] [PubMed] [Google Scholar]
  2. Cariello N. F., Beroud C., Soussi T. Database and software for the analysis of mutations at the human p53 gene. Nucleic Acids Res. 1994 Sep;22(17):3549–3550. [PMC free article] [PubMed] [Google Scholar]
  3. Cariello N. F., Cui L., Beroud C., Soussi T. Database and software for the analysis of mutations in the human p53 gene. Cancer Res. 1994 Aug 15;54(16):4454–4460. [PubMed] [Google Scholar]
  4. Cariello N. F., Douglas G. R. Database and software for the analysis of mutations at the lacZ locus in transgenic rodents. Environ Mol Mutagen. 1996;28(2):145–153. doi: 10.1002/(SICI)1098-2280(1996)28:2<145::AID-EM11>3.0.CO;2-F. [DOI] [PubMed] [Google Scholar]
  5. Cariello N. F., Douglas G. R., Dycaico M. J., Gorelick N. J., Provost G. S., Soussi T. Databases and software for the analysis of mutations in the human p53 gene, the human hprt gene and both the lacI and lacZ gene in transgenic rodents. Nucleic Acids Res. 1997 Jan 1;25(1):136–137. doi: 10.1093/nar/25.1.136. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Cariello N. F., Douglas G. R., Soussi T. Databases and software for the analysis of mutations in the human p53 gene, the human hprt gene and the lacZ gene in transgenic rodents. Nucleic Acids Res. 1996 Jan 1;24(1):119–120. doi: 10.1093/nar/24.1.119. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Cariello N. F., Gorelick N. J. Database and software for the analysis of mutations at the lacI gene in both transgenic rodents and bacteria. Environ Mol Mutagen. 1996;28(4):397–404. doi: 10.1002/(SICI)1098-2280(1996)28:4<397::AID-EM14>3.0.CO;2-A. [DOI] [PubMed] [Google Scholar]
  8. Cariello N. F., Piegorsch W. W., Adams W. T., Skopek T. R. Computer program for the analysis of mutational spectra: application to p53 mutations. Carcinogenesis. 1994 Oct;15(10):2281–2285. doi: 10.1093/carcin/15.10.2281. [DOI] [PubMed] [Google Scholar]
  9. Cariello N. F. Software for the analysis of mutations at the human hprt gene. Mutat Res. 1994 Apr;312(2):173–185. doi: 10.1016/0165-1161(94)90023-x. [DOI] [PubMed] [Google Scholar]
  10. Cariello N. Relational database model for DNA mutations and a software program for implementation of the model. Mutat Res. 1996 Feb 29;359(2):103–117. doi: 10.1016/s0165-1161(96)90257-5. [DOI] [PubMed] [Google Scholar]
  11. Caron de Fromentel C., Soussi T. TP53 tumor suppressor gene: a model for investigating human mutagenesis. Genes Chromosomes Cancer. 1992 Jan;4(1):1–15. doi: 10.1002/gcc.2870040102. [DOI] [PubMed] [Google Scholar]
  12. Douglas G. R., Jiao J., Gingerich J. D., Gossen J. A., Soper L. M. Temporal and molecular characteristics of mutations induced by ethylnitrosourea in germ cells isolated from seminiferous tubules and in spermatozoa of lacZ transgenic mice. Proc Natl Acad Sci U S A. 1995 Aug 1;92(16):7485–7489. doi: 10.1073/pnas.92.16.7485. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Gossen J. A., de Leeuw W. J., Tan C. H., Zwarthoff E. C., Berends F., Lohman P. H., Knook D. L., Vijg J. Efficient rescue of integrated shuttle vectors from transgenic mice: a model for studying mutations in vivo. Proc Natl Acad Sci U S A. 1989 Oct;86(20):7971–7975. doi: 10.1073/pnas.86.20.7971. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Harbach P. R., Filipunas A. L., Wang Y., Aaron C. S. DNA sequence analysis of spontaneous and N-ethyl-N-nitrosourea-induced hprt mutations arising in vivo in cynomolgus monkey T-lymphocytes. Environ Mol Mutagen. 1992;20(2):96–105. doi: 10.1002/em.2850200205. [DOI] [PubMed] [Google Scholar]
  15. Hollstein M., Sidransky D., Vogelstein B., Harris C. C. p53 mutations in human cancers. Science. 1991 Jul 5;253(5015):49–53. doi: 10.1126/science.1905840. [DOI] [PubMed] [Google Scholar]
  16. Jones I. M., Burkhart-Schultz K., Crippen T. L. Cloned mouse lymphocytes permit analysis of somatic mutations that occur in vivo. Somat Cell Mol Genet. 1987 Jul;13(4):325–333. doi: 10.1007/BF01534926. [DOI] [PubMed] [Google Scholar]
  17. Kohler S. W., Provost G. S., Kretz P. L., Dycaico M. J., Sorge J. A., Short J. M. Development of a short-term, in vivo mutagenesis assay: the effects of methylation on the recovery of a lambda phage shuttle vector from transgenic mice. Nucleic Acids Res. 1990 May 25;18(10):3007–3013. doi: 10.1093/nar/18.10.3007. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Provost G. S., Kretz P. L., Hamner R. T., Matthews C. D., Rogers B. J., Lundberg K. S., Dycaico M. J., Short J. M. Transgenic systems for in vivo mutation analysis. Mutat Res. 1993 Jul;288(1):133–149. doi: 10.1016/0027-5107(93)90215-2. [DOI] [PubMed] [Google Scholar]
  19. Turner D. R., Morley A. A., Haliandros M., Kutlaca R., Sanderson B. J. In vivo somatic mutations in human lymphocytes frequently result from major gene alterations. Nature. 1985 May 23;315(6017):343–345. doi: 10.1038/315343a0. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES