Abstract
This first release of the tmRNA database (tmRDB) contains 19 tmRNA sequences, a tmRNA sequence alignment with emphasis of base pairs that are supported by comparative sequence analysis, and a tabulation of tmRNA-encoded tag peptides. The tmRNADB also offers an RNA secondary structure diagram of the Escherichia coli tmRNA, as well as PDB-formatted coordinates for three-dimensional modeling. The data are available on the World Wide Web at http://www.uthct. edu/tmRDB/tmRDB.html
Full Text
The Full Text of this article is available as a PDF (39.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Brown J. W. Phylogenetic comparative analysis of RNA structure on Macintosh computers. Comput Appl Biosci. 1991 Jul;7(3):391–393. doi: 10.1093/bioinformatics/7.3.391. [DOI] [PubMed] [Google Scholar]
- Felden B., Himeno H., Muto A., McCutcheon J. P., Atkins J. F., Gesteland R. F. Probing the structure of the Escherichia coli 10Sa RNA (tmRNA). RNA. 1997 Jan;3(1):89–103. [PMC free article] [PubMed] [Google Scholar]
- Keiler K. C., Waller P. R., Sauer R. T. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science. 1996 Feb 16;271(5251):990–993. doi: 10.1126/science.271.5251.990. [DOI] [PubMed] [Google Scholar]
- Larsen N., Zwieb C. SRP-RNA sequence alignment and secondary structure. Nucleic Acids Res. 1991 Jan 25;19(2):209–215. doi: 10.1093/nar/19.2.209. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mueller F., Döring T., Erdemir T., Greuer B., Jünke N., Osswald M., Rinke-Appel J., Stade K., Thamm S., Brimacombe R. Getting closer to an understanding of the three-dimensional structure of ribosomal RNA. Biochem Cell Biol. 1995 Nov-Dec;73(11-12):767–773. doi: 10.1139/o95-085. [DOI] [PubMed] [Google Scholar]
- Ray B. K., Apirion D. Characterization of 10S RNA: a new stable rna molecule from Escherichia coli. Mol Gen Genet. 1979 Jul 2;174(1):25–32. doi: 10.1007/BF00433301. [DOI] [PubMed] [Google Scholar]
- Thirup S., Larsen N. E. ALMA, an editor for large sequence alignments. Proteins. 1990;7(3):291–295. doi: 10.1002/prot.340070310. [DOI] [PubMed] [Google Scholar]
- Williams K. P., Bartel D. P. Phylogenetic analysis of tmRNA secondary structure. RNA. 1996 Dec;2(12):1306–1310. [PMC free article] [PubMed] [Google Scholar]
