Abstract
X-linked agammaglobulinemia (XLA) is an immunodeficiency caused by mutations in the gene coding for Bruton's agammaglobulinemia tyrosine kinase (BTK). A database (BTKbase) of BTK mutations has been compiled and the recent update lists 463 mutation entries from 406 unrelated families showing 303 unique molecular events. In addition to mutations, the database also lists variants or polymorphisms. Each patient is given a unique patient identity number (PIN). Information is included regarding the phenotype including symptoms. Mutations in all the five domains of BTK have been noticed to cause the disease, the most common event being missense mutations. The mutations appear almost uniformly throughout the molecule and frequently affect CpG sites that code for arginine residues. The putative structural implications of all the missense mutations are given in the database. The improved version of the registry having a number of new features is available at http://www. helsinki.fi/science/signal/btkbase.html
Full Text
The Full Text of this article is available as a PDF (306.6 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bence K., Ma W., Kozasa T., Huang X. Y. Direct stimulation of Bruton's tyrosine kinase by G(q)-protein alpha-subunit. Nature. 1997 Sep 18;389(6648):296–299. doi: 10.1038/38520. [DOI] [PubMed] [Google Scholar]
- Brooimans R. A., van den Berg A. J., Rijkers G. T., Sanders L. A., van Amstel J. K., Tilanus M. G., Grubben M. J., Zegers B. J. Identification of novel Bruton's tyrosine kinase mutations in 10 unrelated subjects with X linked agammaglobulinaemia. J Med Genet. 1997 Jun;34(6):484–488. doi: 10.1136/jmg.34.6.484. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cheng G., Ye Z. S., Baltimore D. Binding of Bruton's tyrosine kinase to Fyn, Lyn, or Hck through a Src homology 3 domain-mediated interaction. Proc Natl Acad Sci U S A. 1994 Aug 16;91(17):8152–8155. doi: 10.1073/pnas.91.17.8152. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cory G. O., Lovering R. C., Hinshelwood S., MacCarthy-Morrogh L., Levinsky R. J., Kinnon C. The protein product of the c-cbl protooncogene is phosphorylated after B cell receptor stimulation and binds the SH3 domain of Bruton's tyrosine kinase. J Exp Med. 1995 Aug 1;182(2):611–615. doi: 10.1084/jem.182.2.611. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Etzold T., Argos P. SRS--an indexing and retrieval tool for flat file data libraries. Comput Appl Biosci. 1993 Feb;9(1):49–57. doi: 10.1093/bioinformatics/9.1.49. [DOI] [PubMed] [Google Scholar]
- Guinamard R., Fougereau M., Seckinger P. The SH3 domain of Bruton's tyrosine kinase interacts with Vav, Sam68 and EWS. Scand J Immunol. 1997 Jun;45(6):587–595. doi: 10.1046/j.1365-3083.1997.d01-447.x. [DOI] [PubMed] [Google Scholar]
- Hagemann T. L., Chen Y., Rosen F. S., Kwan S. P. Genomic organization of the Btk gene and exon scanning for mutations in patients with X-linked agammaglobulinemia. Hum Mol Genet. 1994 Oct;3(10):1743–1749. doi: 10.1093/hmg/3.10.1743. [DOI] [PubMed] [Google Scholar]
- Haire R. N., Ohta Y., Strong S. J., Litman R. T., Liu Y., Prchal J. T., Cooper M. D., Litman G. W. Unusual patterns of exon skipping in Bruton tyrosine kinase are associated with mutations involving the intron 17 3' splice site. Am J Hum Genet. 1997 Apr;60(4):798–807. [PMC free article] [PubMed] [Google Scholar]
- Heyeck S. D., Berg L. J. Developmental regulation of a murine T-cell-specific tyrosine kinase gene, Tsk. Proc Natl Acad Sci U S A. 1993 Jan 15;90(2):669–673. doi: 10.1073/pnas.90.2.669. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hyvönen M., Saraste M. Structure of the PH domain and Btk motif from Bruton's tyrosine kinase: molecular explanations for X-linked agammaglobulinaemia. EMBO J. 1997 Jun 16;16(12):3396–3404. doi: 10.1093/emboj/16.12.3396. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jin H., Webster A. D., Vihinen M., Sideras P., Vorechovsky I., Hammarstróm L., Bernatowska-Matuszkiewicz E., Smith C. I., Bobrow M., Vetrie D. Identification of Btk mutations in 20 unrelated patients with X-linked agammaglobulinaemia (XLA). Hum Mol Genet. 1995 Apr;4(4):693–700. doi: 10.1093/hmg/4.4.693. [DOI] [PubMed] [Google Scholar]
- Kornfeld S. J., Haire R. N., Strong S. J., Tang H., Sung S. S., Fu S. M., Litman G. W. A novel mutation (Cys145-->Stop) in Bruton's tyrosine kinase is associated with newly diagnosed X-linked agammaglobulinemia in a 51-year-old male. Mol Med. 1996 Sep;2(5):619–623. [PMC free article] [PubMed] [Google Scholar]
- Kwan S. P., Kunkel L., Bruns G., Wedgwood R. J., Latt S., Rosen F. S. Mapping of the X-linked agammaglobulinemia locus by use of restriction fragment-length polymorphism. J Clin Invest. 1986 Feb;77(2):649–652. doi: 10.1172/JCI112351. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kwan S. P., Terwilliger J., Parmley R., Raghu G., Sandkuyl L. A., Ott J., Ochs H., Wedgwood R., Rosen F. Identification of a closely linked DNA marker, DXS178, to further refine the X-linked agammaglobulinemia locus. Genomics. 1990 Feb;6(2):238–242. doi: 10.1016/0888-7543(90)90562-9. [DOI] [PubMed] [Google Scholar]
- Mano H., Mano K., Tang B., Koehler M., Yi T., Gilbert D. J., Jenkins N. A., Copeland N. G., Ihle J. N. Expression of a novel form of Tec kinase in hematopoietic cells and mapping of the gene to chromosome 5 near Kit. Oncogene. 1993 Feb;8(2):417–424. [PubMed] [Google Scholar]
- Mattsson P. T., Vihinen M., Smith C. I. X-linked agammaglobulinemia (XLA): a genetic tyrosine kinase (Btk) disease. Bioessays. 1996 Oct;18(10):825–834. doi: 10.1002/bies.950181009. [DOI] [PubMed] [Google Scholar]
- Oeltjen J. C., Malley T. M., Muzny D. M., Miller W., Gibbs R. A., Belmont J. W. Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 1997 Apr;7(4):315–329. doi: 10.1101/gr.7.4.315. [DOI] [PubMed] [Google Scholar]
- Ohta Y., Haire R. N., Litman R. T., Fu S. M., Nelson R. P., Kratz J., Kornfeld S. J., de la Morena M., Good R. A., Litman G. W. Genomic organization and structure of Bruton agammaglobulinemia tyrosine kinase: localization of mutations associated with varied clinical presentations and course in X chromosome-linked agammaglobulinemia. Proc Natl Acad Sci U S A. 1994 Sep 13;91(19):9062–9066. doi: 10.1073/pnas.91.19.9062. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ollila J., Lappalainen I., Vihinen M. Sequence specificity in CpG mutation hotspots. FEBS Lett. 1996 Nov 4;396(2-3):119–122. doi: 10.1016/0014-5793(96)01075-7. [DOI] [PubMed] [Google Scholar]
- Ott J., Mensink E. J., Thompson A., Schot J. D., Schuurman R. K. Heterogeneity in the map distance between X-linked agammaglobulinemia and a map of nine RFLP loci. Hum Genet. 1986 Nov;74(3):280–283. doi: 10.1007/BF00282549. [DOI] [PubMed] [Google Scholar]
- Roberts R. J., Macelis D. REBASE - restriction enzymes and methylases. Nucleic Acids Res. 1998 Jan 1;26(1):338–350. doi: 10.1093/nar/26.1.338. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rohrer J., Parolini O., Belmont J. W., Conley M. E., Parolino O [corrected to Parolini O. ]. The genomic structure of human BTK, the defective gene in X-linked agammaglobulinemia. Immunogenetics. 1994;40(5):319–324. doi: 10.1007/BF01246672. [DOI] [PubMed] [Google Scholar]
- Saha B. K., Curtis S. K., Vogler L. B., Vihinen M. Molecular and structural characterization of five novel mutations in the Bruton's tyrosine kinase gene from patients with X-linked agammaglobulinemia. Mol Med. 1997 Jul;3(7):477–485. [PMC free article] [PubMed] [Google Scholar]
- Sideras P., Müller S., Shiels H., Jin H., Khan W. N., Nilsson L., Parkinson E., Thomas J. D., Brandén L., Larsson I. Genomic organization of mouse and human Bruton's agammaglobulinemia tyrosine kinase (Btk) loci. J Immunol. 1994 Dec 15;153(12):5607–5617. [PubMed] [Google Scholar]
- Sideras P., Smith C. I. Molecular and cellular aspects of X-linked agammaglobulinemia. Adv Immunol. 1995;59:135–223. doi: 10.1016/s0065-2776(08)60631-8. [DOI] [PubMed] [Google Scholar]
- Siliciano J. D., Morrow T. A., Desiderio S. V. itk, a T-cell-specific tyrosine kinase gene inducible by interleukin 2. Proc Natl Acad Sci U S A. 1992 Dec 1;89(23):11194–11198. doi: 10.1073/pnas.89.23.11194. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Smith C. I., Baskin B., Humire-Greiff P., Zhou J. N., Olsson P. G., Maniar H. S., Kjellén P., Lambris J. D., Christensson B., Hammarström L. Expression of Bruton's agammaglobulinemia tyrosine kinase gene, BTK, is selectively down-regulated in T lymphocytes and plasma cells. J Immunol. 1994 Jan 15;152(2):557–565. [PubMed] [Google Scholar]
- Smith C. I., Islam K. B., Vorechovský I., Olerup O., Wallin E., Rabbani H., Baskin B., Hammarström L. X-linked agammaglobulinemia and other immunoglobulin deficiencies. Immunol Rev. 1994 Apr;138:159–183. doi: 10.1111/j.1600-065x.1994.tb00851.x. [DOI] [PubMed] [Google Scholar]
- Smith C. I., Vihinen M. Immunodeficiency mutation databases--a new research tool. Immunol Today. 1996 Nov;17(11):495–496. doi: 10.1016/0167-5699(96)30063-7. [DOI] [PubMed] [Google Scholar]
- Tamagnone L., Lahtinen I., Mustonen T., Virtaneva K., Francis F., Muscatelli F., Alitalo R., Smith C. I., Larsson C., Alitalo K. BMX, a novel nonreceptor tyrosine kinase gene of the BTK/ITK/TEC/TXK family located in chromosome Xp22.2. Oncogene. 1994 Dec;9(12):3683–3688. [PubMed] [Google Scholar]
- Tsukada S., Saffran D. C., Rawlings D. J., Parolini O., Allen R. C., Klisak I., Sparkes R. S., Kubagawa H., Mohandas T., Quan S. Deficient expression of a B cell cytoplasmic tyrosine kinase in human X-linked agammaglobulinemia. Cell. 1993 Jan 29;72(2):279–290. doi: 10.1016/0092-8674(93)90667-f. [DOI] [PubMed] [Google Scholar]
- Vetrie D., Vorechovský I., Sideras P., Holland J., Davies A., Flinter F., Hammarström L., Kinnon C., Levinsky R., Bobrow M. The gene involved in X-linked agammaglobulinaemia is a member of the src family of protein-tyrosine kinases. Nature. 1993 Jan 21;361(6409):226–233. doi: 10.1038/361226a0. [DOI] [PubMed] [Google Scholar]
- Vihinen M., Belohradsky B. H., Haire R. N., Holinski-Feder E., Kwan S. P., Lappalainen I., Lehväslaiho H., Lester T., Meindl A., Ochs H. D. BTKbase, mutation database for X-linked agammaglobulinemia (XLA) Nucleic Acids Res. 1997 Jan 1;25(1):166–171. doi: 10.1093/nar/25.1.166. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vihinen M., Brooimans R. A., Kwan S. P., Lehväslaiho H., Litman G. W., Ochs H. D., Resnick I., Schwaber J. H., Vorechovsky I., Smith C. I. BTKbase: XLA-mutation registry. Immunol Today. 1996 Nov;17(11):502–506. doi: 10.1016/0167-5699(96)30058-3. [DOI] [PubMed] [Google Scholar]
- Vihinen M., Cooper M. D., de Saint Basile G., Fischer A., Good R. A., Hendriks R. W., Kinnon C., Kwan S. P., Litman G. W., Notarangelo L. D. BTKbase: a database of XLA-causing mutations. International Study Group. Immunol Today. 1995 Oct;16(10):460–465. doi: 10.1016/0167-5699(95)80027-1. [DOI] [PubMed] [Google Scholar]
- Vihinen M., Iwata T., Kinnon C., Kwan S. P., Ochs H. D., Vorechovský I., Smith C. I. BTKbase, mutation database for X-linked agammaglobulinemia (XLA). Nucleic Acids Res. 1996 Jan 1;24(1):160–165. doi: 10.1093/nar/24.1.160. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vihinen M., Nilsson L., Smith C. I. Structural basis of SH2 domain mutations in X-linked agammaglobulinemia. Biochem Biophys Res Commun. 1994 Dec 15;205(2):1270–1277. doi: 10.1006/bbrc.1994.2802. [DOI] [PubMed] [Google Scholar]
- Vihinen M., Nilsson L., Smith C. I. Tec homology (TH) adjacent to the PH domain. FEBS Lett. 1994 Aug 22;350(2-3):263–265. doi: 10.1016/0014-5793(94)00783-7. [DOI] [PubMed] [Google Scholar]
- Vihinen M., Nore B. F., Mattsson P. T., Bäckesjö C. M., Nars M., Koutaniemi S., Watanabe C., Lester T., Jones A., Ochs H. D. Missense mutations affecting a conserved cysteine pair in the TH domain of Btk. FEBS Lett. 1997 Aug 18;413(2):205–210. doi: 10.1016/s0014-5793(97)00912-5. [DOI] [PubMed] [Google Scholar]
- Vihinen M., Vetrie D., Maniar H. S., Ochs H. D., Zhu Q., Vorechovský I., Webster A. D., Notarangelo L. D., Nilsson L., Sowadski J. M. Structural basis for chromosome X-linked agammaglobulinemia: a tyrosine kinase disease. Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12803–12807. doi: 10.1073/pnas.91.26.12803. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vihinen M., Zvelebil M. J., Zhu Q., Brooimans R. A., Ochs H. D., Zegers B. J., Nilsson L., Waterfield M. D., Smith C. I. Structural basis for pleckstrin homology domain mutations in X-linked agammaglobulinemia. Biochemistry. 1995 Feb 7;34(5):1475–1481. doi: 10.1021/bi00005a002. [DOI] [PubMed] [Google Scholar]
- Vorechovský I., Luo L., Hertz J. M., Frøland S. S., Klemola T., Fiorini M., Quinti I., Paganelli R., Ozsahin H., Hammarström L. Mutation pattern in the Bruton's tyrosine kinase gene in 26 unrelated patients with X-linked agammaglobulinemia. Hum Mutat. 1997;9(5):418–425. doi: 10.1002/(SICI)1098-1004(1997)9:5<418::AID-HUMU7>3.0.CO;2-#. [DOI] [PubMed] [Google Scholar]
- Vorechovský I., Vetrie D., Holland J., Bentley D. R., Thomas K., Zhou J. N., Notarangelo L. D., Plebani A., Fontán G., Ochs H. D. Isolation of cosmid and cDNA clones in the region surrounding the BTK gene at Xq21.3-q22. Genomics. 1994 Jun;21(3):517–524. doi: 10.1006/geno.1994.1310. [DOI] [PubMed] [Google Scholar]
- Vorechovský I., Vihinen M., de Saint Basile G., Honsová S., Hammarström L., Müller S., Nilsson L., Fischer A., Smith C. I. DNA-based mutation analysis of Bruton's tyrosine kinase gene in patients with X-linked agammaglobulinaemia. Hum Mol Genet. 1995 Jan;4(1):51–58. doi: 10.1093/hmg/4.1.51. [DOI] [PubMed] [Google Scholar]
- Zhu Q., Zhang M., Rawlings D. J., Vihinen M., Hagemann T., Saffran D. C., Kwan S. P., Nilsson L., Smith C. I., Witte O. N. Deletion within the Src homology domain 3 of Bruton's tyrosine kinase resulting in X-linked agammaglobulinemia (XLA). J Exp Med. 1994 Aug 1;180(2):461–470. doi: 10.1084/jem.180.2.461. [DOI] [PMC free article] [PubMed] [Google Scholar]
- de Weers M., Verschuren M. C., Kraakman M. E., Mensink R. G., Schuurman R. K., van Dongen J. J., Hendriks R. W. The Bruton's tyrosine kinase gene is expressed throughout B cell differentiation, from early precursor B cell stages preceding immunoglobulin gene rearrangement up to mature B cell stages. Eur J Immunol. 1993 Dec;23(12):3109–3114. doi: 10.1002/eji.1830231210. [DOI] [PubMed] [Google Scholar]