Abstract
UV radiation induces two major classes of pyrimidine dimers: the pyrimidine [6-4] pyrimidone photoproduct (6-4 product) and the cyclobutane pyrimidine dimer (CPD). Many organisms produce enzymes, termed photolyases, that specifically bind to these damage products and split them via a UV-A/blue light-dependent mechanism, thereby reversing the damage. These photolyases are specific for either CPDs or 6-4 products. A gene that expresses a protein with 6-4 photolyase activity in vitro was recently cloned from Drosophila melanogaster and Xenopus laevis. We report here the isolation of a homolog of this gene, cloned on the basis of sequence similarity, from the higher plant Arabidopsis thaliana. This cloned gene produces a protein with 6-4 photolyase activity when expressed in Escherichia coli. We also find that a previously described mutant of Arabidopsis (uvr3) that is defective in photoreactivation of 6-4 products carries a nonsense mutation in this 6-4 photolyase homolog. We have therefore termed this gene UVR3. Although homologs of this gene have previously been shown to produce a functional 6-4 photolyase when expressed in heterologous systems, this is the first demonstration of a requirement for this gene for photoreactivation of 6-4 products in vivo.
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Selected References
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- Ahmad M., Cashmore A. R. HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature. 1993 Nov 11;366(6451):162–166. doi: 10.1038/366162a0. [DOI] [PubMed] [Google Scholar]
- Ahmad M., Jarillo J. A., Klimczak L. J., Landry L. G., Peng T., Last R. L., Cashmore A. R. An enzyme similar to animal type II photolyases mediates photoreactivation in Arabidopsis. Plant Cell. 1997 Feb;9(2):199–207. doi: 10.1105/tpc.9.2.199. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Akasaka S., Yamamoto K. Construction of Escherichia coli K12 phr deletion and insertion mutants by gene replacement. Mutat Res. 1991 Jan;254(1):27–35. doi: 10.1016/0921-8777(91)90037-p. [DOI] [PubMed] [Google Scholar]
- Bochner B. R., Huang H. C., Schieven G. L., Ames B. N. Positive selection for loss of tetracycline resistance. J Bacteriol. 1980 Aug;143(2):926–933. doi: 10.1128/jb.143.2.926-933.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen J. J., Mitchell D. L., Britt A. B. A Light-Dependent Pathway for the Elimination of UV-Induced Pyrimidine (6-4) Pyrimidinone Photoproducts in Arabidopsis. Plant Cell. 1994 Sep;6(9):1311–1317. doi: 10.1105/tpc.6.9.1311. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hoffman P. D., Batschauer A., Hays J. B. PHH1, a novel gene from Arabidopsis thaliana that encodes a protein similar to plant blue-light photoreceptors and microbial photolyases. Mol Gen Genet. 1996 Nov 27;253(1-2):259–265. doi: 10.1007/s004380050321. [DOI] [PubMed] [Google Scholar]
- Jiang C. Z., Yee J., Mitchell D. L., Britt A. B. Photorepair mutants of Arabidopsis. Proc Natl Acad Sci U S A. 1997 Jul 8;94(14):7441–7445. doi: 10.1073/pnas.94.14.7441. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kanai S., Kikuno R., Toh H., Ryo H., Todo T. Molecular evolution of the photolyase-blue-light photoreceptor family. J Mol Evol. 1997 Nov;45(5):535–548. doi: 10.1007/pl00006258. [DOI] [PubMed] [Google Scholar]
- Kato T., Jr, Todo T., Ayaki H., Ishizaki K., Morita T., Mitra S., Ikenaga M. Cloning of a marsupial DNA photolyase gene and the lack of related nucleotide sequences in placental mammals. Nucleic Acids Res. 1994 Oct 11;22(20):4119–4124. doi: 10.1093/nar/22.20.4119. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim S. T., Malhotra K., Smith C. A., Taylor J. S., Sancar A. Characterization of (6-4) photoproduct DNA photolyase. J Biol Chem. 1994 Mar 18;269(11):8535–8540. [PubMed] [Google Scholar]
- Kim S. T., Malhotra K., Taylor J. S., Sancar A. Purification and partial characterization of (6-4) photoproduct DNA photolyase from Xenopus laevis. Photochem Photobiol. 1996 Mar;63(3):292–295. doi: 10.1111/j.1751-1097.1996.tb03028.x. [DOI] [PubMed] [Google Scholar]
- Landry L. G., Stapleton A. E., Lim J., Hoffman P., Hays J. B., Walbot V., Last R. L. An Arabidopsis photolyase mutant is hypersensitive to ultraviolet-B radiation. Proc Natl Acad Sci U S A. 1997 Jan 7;94(1):328–332. doi: 10.1073/pnas.94.1.328. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lin C., Robertson D. E., Ahmad M., Raibekas A. A., Jorns M. S., Dutton P. L., Cashmore A. R. Association of flavin adenine dinucleotide with the Arabidopsis blue light receptor CRY1. Science. 1995 Aug 18;269(5226):968–970. doi: 10.1126/science.7638620. [DOI] [PubMed] [Google Scholar]
- Malhotra K., Kim S. T., Batschauer A., Dawut L., Sancar A. Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactors but lack DNA repair activity. Biochemistry. 1995 May 23;34(20):6892–6899. doi: 10.1021/bi00020a037. [DOI] [PubMed] [Google Scholar]
- Pang Q., Hays J. B. UV-B-Inducible and Temperature-Sensitive Photoreactivation of Cyclobutane Pyrimidine Dimers in Arabidopsis thaliana. Plant Physiol. 1991 Feb;95(2):536–543. doi: 10.1104/pp.95.2.536. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sancar A. Structure and function of DNA photolyase. Biochemistry. 1994 Jan 11;33(1):2–9. doi: 10.1021/bi00167a001. [DOI] [PubMed] [Google Scholar]
- Sancar G. B. DNA photolyases: physical properties, action mechanism, and roles in dark repair. Mutat Res. 1990 Sep-Nov;236(2-3):147–160. doi: 10.1016/0921-8777(90)90002-m. [DOI] [PubMed] [Google Scholar]
- The electronic Plant Gene Register. Plant Physiol. 1996 Mar;110(3):1047–1048. doi: 10.1104/pp.110.3.1047. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Todo T., Kim S. T., Hitomi K., Otoshi E., Inui T., Morioka H., Kobayashi H., Ohtsuka E., Toh H., Ikenaga M. Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4)photolyase. Nucleic Acids Res. 1997 Feb 15;25(4):764–768. doi: 10.1093/nar/25.4.764. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Todo T., Ryo H., Yamamoto K., Toh H., Inui T., Ayaki H., Nomura T., Ikenaga M. Similarity among the Drosophila (6-4)photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family. Science. 1996 Apr 5;272(5258):109–112. doi: 10.1126/science.272.5258.109. [DOI] [PubMed] [Google Scholar]
- Todo T., Takemori H., Ryo H., Ihara M., Matsunaga T., Nikaido O., Sato K., Nomura T. A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts. Nature. 1993 Jan 28;361(6410):371–374. doi: 10.1038/361371a0. [DOI] [PubMed] [Google Scholar]
- Uchida N., Mitani H., Todo T., Ikenaga M., Shima A. Photoreactivating enzyme for (6-4) photoproducts in cultured goldfish cells. Photochem Photobiol. 1997 Jun;65(6):964–968. doi: 10.1111/j.1751-1097.1997.tb07955.x. [DOI] [PubMed] [Google Scholar]
- Yamamoto K. Photoreactivation reverses ultraviolet radiation induced premutagenic lesions leading to frameshift mutations in Escherichia coli. Mol Gen Genet. 1985;201(2):141–145. doi: 10.1007/BF00425650. [DOI] [PubMed] [Google Scholar]
- Yamamoto K., Satake M., Shinagawa H., Fujiwara Y. Amelioration of the ultraviolet sensitivity of an Escherichia coli recA mutant in the dark by photoreactivating enzyme. Mol Gen Genet. 1983;190(3):511–515. doi: 10.1007/BF00331084. [DOI] [PubMed] [Google Scholar]
- Yasui A., Eker A. P., Yasuhira S., Yajima H., Kobayashi T., Takao M., Oikawa A. A new class of DNA photolyases present in various organisms including aplacental mammals. EMBO J. 1994 Dec 15;13(24):6143–6151. doi: 10.1002/j.1460-2075.1994.tb06961.x. [DOI] [PMC free article] [PubMed] [Google Scholar]