Abstract
To investigate the repair of oxidative damage in DNA, we have established an in vitro assay utilizing human lymphoblastoid whole cell extracts and plasmid DNA damaged by exposure to methylene blue and visible light. This treatment has been shown to produce predominantly 7-hydro-8-oxodeoxyguanosine (8-oxodG) in double-stranded DNA at low levels of modification. DNA containing 1. 6 lesions per plasmid is substrate for efficient repair synthesis by cell extracts. The incorporation of dGMP is 2.7 +/- 0.5 times greater than the incorporation of dCMP, indicating an average repair patch of 3-4 nucleotides. Damage-specific nicking occurs within 15 min, while resynthesis is slower. The incorporation of dGMP increases linearly, while the incorporation of dCMP exhibits a distinct lag. Extracts from xeroderma pigmentosum (XP) complementation groups A and B exhibit 25 and 40%, respectively, of the incorporation of dCMP compared with normal extracts, but extracts from an XP-D cell line exhibit twice the activity. These data suggest that the efficient repair of 8-oxodG lesions observed in human cell extracts involves more than one pathway of base excision repair.
Full Text
The Full Text of this article is available as a PDF (289.2 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Ames B. N., Shigenaga M. K., Hagen T. M. Oxidants, antioxidants, and the degenerative diseases of aging. Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):7915–7922. doi: 10.1073/pnas.90.17.7915. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Balajee A. S., May A., Dianov G. L., Friedberg E. C., Bohr V. A. Reduced RNA polymerase II transcription in intact and permeabilized Cockayne syndrome group B cells. Proc Natl Acad Sci U S A. 1997 Apr 29;94(9):4306–4311. doi: 10.1073/pnas.94.9.4306. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Beckman K. B., Ames B. N. Oxidative decay of DNA. J Biol Chem. 1997 Aug 8;272(32):19633–19636. doi: 10.1074/jbc.272.32.19633. [DOI] [PubMed] [Google Scholar]
- Bessho T., Roy R., Yamamoto K., Kasai H., Nishimura S., Tano K., Mitra S. Repair of 8-hydroxyguanine in DNA by mammalian N-methylpurine-DNA glycosylase. Proc Natl Acad Sci U S A. 1993 Oct 1;90(19):8901–8904. doi: 10.1073/pnas.90.19.8901. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bessho T., Tano K., Kasai H., Ohtsuka E., Nishimura S. Evidence for two DNA repair enzymes for 8-hydroxyguanine (7,8-dihydro-8-oxoguanine) in human cells. J Biol Chem. 1993 Sep 15;268(26):19416–19421. [PubMed] [Google Scholar]
- Boiteux S., Gajewski E., Laval J., Dizdaroglu M. Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase): excision of purine lesions in DNA produced by ionizing radiation or photosensitization. Biochemistry. 1992 Jan 14;31(1):106–110. doi: 10.1021/bi00116a016. [DOI] [PubMed] [Google Scholar]
- Cooper P. K., Nouspikel T., Clarkson S. G., Leadon S. A. Defective transcription-coupled repair of oxidative base damage in Cockayne syndrome patients from XP group G. Science. 1997 Feb 14;275(5302):990–993. doi: 10.1126/science.275.5302.990. [DOI] [PubMed] [Google Scholar]
- Croteau D. L., ap Rhys C. M., Hudson E. K., Dianov G. L., Hansford R. G., Bohr V. A. An oxidative damage-specific endonuclease from rat liver mitochondria. J Biol Chem. 1997 Oct 24;272(43):27338–27344. doi: 10.1074/jbc.272.43.27338. [DOI] [PubMed] [Google Scholar]
- Czeczot H., Tudek B., Lambert B., Laval J., Boiteux S. Escherichia coli Fpg protein and UvrABC endonuclease repair DNA damage induced by methylene blue plus visible light in vivo and in vitro. J Bacteriol. 1991 Jun;173(11):3419–3424. doi: 10.1128/jb.173.11.3419-3424.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Demple B., Harrison L. Repair of oxidative damage to DNA: enzymology and biology. Annu Rev Biochem. 1994;63:915–948. doi: 10.1146/annurev.bi.63.070194.004411. [DOI] [PubMed] [Google Scholar]
- DiGiuseppe J. A., Dresler S. L. Bleomycin-induced DNA repair synthesis in permeable human fibroblasts: mediation of long-patch and short-patch repair by distinct DNA polymerases. Biochemistry. 1989 Nov 28;28(24):9515–9520. doi: 10.1021/bi00450a040. [DOI] [PubMed] [Google Scholar]
- Dianov G., Price A., Lindahl T. Generation of single-nucleotide repair patches following excision of uracil residues from DNA. Mol Cell Biol. 1992 Apr;12(4):1605–1612. doi: 10.1128/mcb.12.4.1605. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dizdaroglu M. Oxidative damage to DNA in mammalian chromatin. Mutat Res. 1992 Sep;275(3-6):331–342. doi: 10.1016/0921-8734(92)90036-o. [DOI] [PubMed] [Google Scholar]
- Dresler S. L., Lieberman M. W. Identification of DNA polymerases involved in DNA excision repair in diploid human fibroblasts. J Biol Chem. 1983 Aug 25;258(16):9990–9994. [PubMed] [Google Scholar]
- Evans M. K., Robbins J. H., Ganges M. B., Tarone R. E., Nairn R. S., Bohr V. A. Gene-specific DNA repair in xeroderma pigmentosum complementation groups A, C, D, and F. Relation to cellular survival and clinical features. J Biol Chem. 1993 Mar 5;268(7):4839–4847. [PubMed] [Google Scholar]
- Floyd R. A., West M. S., Eneff K. L., Schneider J. E. Methylene blue plus light mediates 8-hydroxyguanine formation in DNA. Arch Biochem Biophys. 1989 Aug 15;273(1):106–111. doi: 10.1016/0003-9861(89)90167-7. [DOI] [PubMed] [Google Scholar]
- Frosina G., Fortini P., Rossi O., Carrozzino F., Raspaglio G., Cox L. S., Lane D. P., Abbondandolo A., Dogliotti E. Two pathways for base excision repair in mammalian cells. J Biol Chem. 1996 Apr 19;271(16):9573–9578. doi: 10.1074/jbc.271.16.9573. [DOI] [PubMed] [Google Scholar]
- Jaruga P., Dizdaroglu M. Repair of products of oxidative DNA base damage in human cells. Nucleic Acids Res. 1996 Apr 15;24(8):1389–1394. doi: 10.1093/nar/24.8.1389. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Klein J. C., Bleeker M. J., Saris C. P., Roelen H. C., Brugghe H. F., van den Elst H., van der Marel G. A., van Boom J. H., Westra J. G., Kriek E. Repair and replication of plasmids with site-specific 8-oxodG and 8-AAFdG residues in normal and repair-deficient human cells. Nucleic Acids Res. 1992 Sep 11;20(17):4437–4443. doi: 10.1093/nar/20.17.4437. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Klungland A., Lindahl T. Second pathway for completion of human DNA base excision-repair: reconstitution with purified proteins and requirement for DNase IV (FEN1). EMBO J. 1997 Jun 2;16(11):3341–3348. doi: 10.1093/emboj/16.11.3341. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kvam E., Berg K., Steen H. B. Characterization of singlet oxygen-induced guanine residue damage after photochemical treatment of free nucleosides and DNA. Biochim Biophys Acta. 1994 Jan 18;1217(1):9–15. [PubMed] [Google Scholar]
- Leadon S. A., Cooper P. K. Preferential repair of ionizing radiation-induced damage in the transcribed strand of an active human gene is defective in Cockayne syndrome. Proc Natl Acad Sci U S A. 1993 Nov 15;90(22):10499–10503. doi: 10.1073/pnas.90.22.10499. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lindahl T. Instability and decay of the primary structure of DNA. Nature. 1993 Apr 22;362(6422):709–715. doi: 10.1038/362709a0. [DOI] [PubMed] [Google Scholar]
- Lipscomb L. A., Peek M. E., Morningstar M. L., Verghis S. M., Miller E. M., Rich A., Essigmann J. M., Williams L. D. X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine. Proc Natl Acad Sci U S A. 1995 Jan 31;92(3):719–723. doi: 10.1073/pnas.92.3.719. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matsumoto Y., Bogenhagen D. F. Repair of a synthetic abasic site in DNA in a Xenopus laevis oocyte extract. Mol Cell Biol. 1989 Sep;9(9):3750–3757. doi: 10.1128/mcb.9.9.3750. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matsumoto Y., Kim K., Bogenhagen D. F. Proliferating cell nuclear antigen-dependent abasic site repair in Xenopus laevis oocytes: an alternative pathway of base excision DNA repair. Mol Cell Biol. 1994 Sep;14(9):6187–6197. doi: 10.1128/mcb.14.9.6187. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McBride T. J., Schneider J. E., Floyd R. A., Loeb L. A. Mutations induced by methylene blue plus light in single-stranded M13mp2. Proc Natl Acad Sci U S A. 1992 Aug 1;89(15):6866–6870. doi: 10.1073/pnas.89.15.6866. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nash H. M., Bruner S. D., Schärer O. D., Kawate T., Addona T. A., Spooner E., Lane W. S., Verdine G. L. Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr Biol. 1996 Aug 1;6(8):968–980. doi: 10.1016/s0960-9822(02)00641-3. [DOI] [PubMed] [Google Scholar]
- Radicella J. P., Dherin C., Desmaze C., Fox M. S., Boiteux S. Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):8010–8015. doi: 10.1073/pnas.94.15.8010. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ravanat J. L., Cadet J. Reaction of singlet oxygen with 2'-deoxyguanosine and DNA. Isolation and characterization of the main oxidation products. Chem Res Toxicol. 1995 Apr-May;8(3):379–388. doi: 10.1021/tx00045a009. [DOI] [PubMed] [Google Scholar]
- Reardon J. T., Bessho T., Kung H. C., Bolton P. H., Sancar A. In vitro repair of oxidative DNA damage by human nucleotide excision repair system: possible explanation for neurodegeneration in xeroderma pigmentosum patients. Proc Natl Acad Sci U S A. 1997 Aug 19;94(17):9463–9468. doi: 10.1073/pnas.94.17.9463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Regan J. D., Setlow R. B. Two forms of repair in the DNA of human cells damaged by chemical carcinogens and mutagens. Cancer Res. 1974 Dec;34(12):3318–3325. [PubMed] [Google Scholar]
- Roldán-Arjona T., Wei Y. F., Carter K. C., Klungland A., Anselmino C., Wang R. P., Augustus M., Lindahl T. Molecular cloning and functional expression of a human cDNA encoding the antimutator enzyme 8-hydroxyguanine-DNA glycosylase. Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):8016–8020. doi: 10.1073/pnas.94.15.8016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rosenquist T. A., Zharkov D. O., Grollman A. P. Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase. Proc Natl Acad Sci U S A. 1997 Jul 8;94(14):7429–7434. doi: 10.1073/pnas.94.14.7429. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rünger T. M., Epe B., Möller K. Repair of ultraviolet B and singlet oxygen-induced DNA damage in xeroderma pigmentosum cells. J Invest Dermatol. 1995 Jan;104(1):68–73. doi: 10.1111/1523-1747.ep12613504. [DOI] [PubMed] [Google Scholar]
- Satoh M. S., Jones C. J., Wood R. D., Lindahl T. DNA excision-repair defect of xeroderma pigmentosum prevents removal of a class of oxygen free radical-induced base lesions. Proc Natl Acad Sci U S A. 1993 Jul 1;90(13):6335–6339. doi: 10.1073/pnas.90.13.6335. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shivji M. K., Podust V. N., Hübscher U., Wood R. D. Nucleotide excision repair DNA synthesis by DNA polymerase epsilon in the presence of PCNA, RFC, and RPA. Biochemistry. 1995 Apr 18;34(15):5011–5017. doi: 10.1021/bi00015a012. [DOI] [PubMed] [Google Scholar]
- Taffe B. G., Larminat F., Laval J., Croteau D. L., Anson R. M., Bohr V. A. Gene-specific nuclear and mitochondrial repair of formamidopyrimidine DNA glycosylase-sensitive sites in Chinese hamster ovary cells. Mutat Res. 1996 Dec 2;364(3):183–192. doi: 10.1016/s0921-8777(96)00031-6. [DOI] [PubMed] [Google Scholar]
- Tchou J., Kasai H., Shibutani S., Chung M. H., Laval J., Grollman A. P., Nishimura S. 8-oxoguanine (8-hydroxyguanine) DNA glycosylase and its substrate specificity. Proc Natl Acad Sci U S A. 1991 Jun 1;88(11):4690–4694. doi: 10.1073/pnas.88.11.4690. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wood M. L., Dizdaroglu M., Gajewski E., Essigmann J. M. Mechanistic studies of ionizing radiation and oxidative mutagenesis: genetic effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique site in a viral genome. Biochemistry. 1990 Jul 31;29(30):7024–7032. doi: 10.1021/bi00482a011. [DOI] [PubMed] [Google Scholar]
- Wood R. D., Shivji M. K. Which DNA polymerases are used for DNA-repair in eukaryotes? Carcinogenesis. 1997 Apr;18(4):605–610. doi: 10.1093/carcin/18.4.605. [DOI] [PubMed] [Google Scholar]
- Yacoub A., Augeri L., Kelley M. R., Doetsch P. W., Deutsch W. A. A Drosophila ribosomal protein contains 8-oxoguanine and abasic site DNA repair activities. EMBO J. 1996 May 1;15(9):2306–2312. [PMC free article] [PubMed] [Google Scholar]
- van der Kemp P. A., Thomas D., Barbey R., de Oliveira R., Boiteux S. Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine. Proc Natl Acad Sci U S A. 1996 May 28;93(11):5197–5202. doi: 10.1073/pnas.93.11.5197. [DOI] [PMC free article] [PubMed] [Google Scholar]