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. 1998 Jul 1;26(13):3146–3153. doi: 10.1093/nar/26.13.3146

XR-C1, a new CHO cell mutant which is defective in DNA-PKcs, is impaired in both V(D)J coding and signal joint formation.

A Errami 1, D M He 1, A A Friedl 1, W J Overkamp 1, B Morolli 1, E A Hendrickson 1, F Eckardt-Schupp 1, M Oshimura 1, P H Lohman 1, S P Jackson 1, M Z Zdzienicka 1
PMCID: PMC147672  PMID: 9628911

Abstract

DNA-dependent protein kinase (DNA-PK) plays an important role in DNA double-strand break (DSB) repair and V(D)J recombination. We have isolated a new X-ray-sensitive CHO cell line, XR-C1, which is impaired in DSB repair and which was assigned to complementation group 7, the group that is defective in the XRCC7 / SCID ( Prkdc ) gene encoding the catalytic subunit of DNA-PK (DNA-PKcs). Consistent with this complementation analysis, XR-C1 cells lackeddetectable DNA-PKcs protein, did not display DNA-PK catalytic activity and were complemented by the introduction of a single human chromosome 8 (providing the Prkdc gene). The impact of the XR-C1 mutation on V(D)J recombination was quite different from that found in most rodent cells defective in DNA-PKcs, which are preferentially blocked in coding joint formation, whereas XR-C1 cells were defective in forming both coding and signal joints. These results suggest that DNA-PKcs is required for both coding and signal joint formation during V(D)J recombination and that the XR-C1 mutant cell line may prove to be a useful tool in understanding this pathway.

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Selected References

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  1. Anderson C. W., Lees-Miller S. P. The nuclear serine/threonine protein kinase DNA-PK. Crit Rev Eukaryot Gene Expr. 1992;2(4):283–314. [PubMed] [Google Scholar]
  2. Araki R., Fujimori A., Hamatani K., Mita K., Saito T., Mori M., Fukumura R., Morimyo M., Muto M., Itoh M. Nonsense mutation at Tyr-4046 in the DNA-dependent protein kinase catalytic subunit of severe combined immune deficiency mice. Proc Natl Acad Sci U S A. 1997 Mar 18;94(6):2438–2443. doi: 10.1073/pnas.94.6.2438. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Biedermann K. A., Sun J. R., Giaccia A. J., Tosto L. M., Brown J. M. scid mutation in mice confers hypersensitivity to ionizing radiation and a deficiency in DNA double-strand break repair. Proc Natl Acad Sci U S A. 1991 Feb 15;88(4):1394–1397. doi: 10.1073/pnas.88.4.1394. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Blunt T., Gell D., Fox M., Taccioli G. E., Lehmann A. R., Jackson S. P., Jeggo P. A. Identification of a nonsense mutation in the carboxyl-terminal region of DNA-dependent protein kinase catalytic subunit in the scid mouse. Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10285–10290. doi: 10.1073/pnas.93.19.10285. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Bosma M. J., Carroll A. M. The SCID mouse mutant: definition, characterization, and potential uses. Annu Rev Immunol. 1991;9:323–350. doi: 10.1146/annurev.iy.09.040191.001543. [DOI] [PubMed] [Google Scholar]
  6. Carter T., Vancurová I., Sun I., Lou W., DeLeon S. A DNA-activated protein kinase from HeLa cell nuclei. Mol Cell Biol. 1990 Dec;10(12):6460–6471. doi: 10.1128/mcb.10.12.6460. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Cary R. B., Peterson S. R., Wang J., Bear D. G., Bradbury E. M., Chen D. J. DNA looping by Ku and the DNA-dependent protein kinase. Proc Natl Acad Sci U S A. 1997 Apr 29;94(9):4267–4272. doi: 10.1073/pnas.94.9.4267. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Danska J. S., Guidos C. J. Essential and perilous: V(D)J recombination and DNA damage checkpoints in lymphocyte precursors. Semin Immunol. 1997 Jun;9(3):199–206. doi: 10.1006/smim.1997.0072. [DOI] [PubMed] [Google Scholar]
  9. Danska J. S., Holland D. P., Mariathasan S., Williams K. M., Guidos C. J. Biochemical and genetic defects in the DNA-dependent protein kinase in murine scid lymphocytes. Mol Cell Biol. 1996 Oct;16(10):5507–5517. doi: 10.1128/mcb.16.10.5507. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Errami A., Smider V., Rathmell W. K., He D. M., Hendrickson E. A., Zdzienicka M. Z., Chu G. Ku86 defines the genetic defect and restores X-ray resistance and V(D)J recombination to complementation group 5 hamster cell mutants. Mol Cell Biol. 1996 Apr;16(4):1519–1526. doi: 10.1128/mcb.16.4.1519. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Finnie N. J., Gottlieb T. M., Blunt T., Jeggo P. A., Jackson S. P. DNA-dependent protein kinase activity is absent in xrs-6 cells: implications for site-specific recombination and DNA double-strand break repair. Proc Natl Acad Sci U S A. 1995 Jan 3;92(1):320–324. doi: 10.1073/pnas.92.1.320. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Friedl A. A., Kraxenberger A., Eckardt-Schupp F. An electrophoretic approach to the assessment of the spatial distribution of DNA double-strand breaks in mammalian cells. Electrophoresis. 1995 Oct;16(10):1865–1874. doi: 10.1002/elps.11501601306. [DOI] [PubMed] [Google Scholar]
  13. Fujimori A., Araki R., Fukumura R., Saito T., Mori M., Mita K., Tatsumi K., Abe M. The murine DNA-PKcs gene consists of 86 exons dispersed in more than 250 kb. Genomics. 1997 Oct 1;45(1):194–199. doi: 10.1006/geno.1997.4919. [DOI] [PubMed] [Google Scholar]
  14. Fukumura R., Araki R., Fujimori A., Mori M., Saito T., Watanabe F., Sarashi M., Itsukaichi H., Eguchi-Kasai K., Sato K. Murine cell line SX9 bearing a mutation in the dna-pkcs gene exhibits aberrant V(D)J recombination not only in the coding joint but also in the signal joint. J Biol Chem. 1998 May 22;273(21):13058–13064. doi: 10.1074/jbc.273.21.13058. [DOI] [PubMed] [Google Scholar]
  15. Fulop G. M., Phillips R. A. The scid mutation in mice causes a general defect in DNA repair. Nature. 1990 Oct 4;347(6292):479–482. doi: 10.1038/347479a0. [DOI] [PubMed] [Google Scholar]
  16. Gu Y., Jin S., Gao Y., Weaver D. T., Alt F. W. Ku70-deficient embryonic stem cells have increased ionizing radiosensitivity, defective DNA end-binding activity, and inability to support V(D)J recombination. Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):8076–8081. doi: 10.1073/pnas.94.15.8076. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Hammarsten O., Chu G. DNA-dependent protein kinase: DNA binding and activation in the absence of Ku. Proc Natl Acad Sci U S A. 1998 Jan 20;95(2):525–530. doi: 10.1073/pnas.95.2.525. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Hartley K. O., Gell D., Smith G. C., Zhang H., Divecha N., Connelly M. A., Admon A., Lees-Miller S. P., Anderson C. W., Jackson S. P. DNA-dependent protein kinase catalytic subunit: a relative of phosphatidylinositol 3-kinase and the ataxia telangiectasia gene product. Cell. 1995 Sep 8;82(5):849–856. doi: 10.1016/0092-8674(95)90482-4. [DOI] [PubMed] [Google Scholar]
  19. He D. M., Lee S. E., Hendrickson E. A. Restoration of X-ray and etoposide resistance, Ku-end binding activity and V(D) J recombination to the Chinese hamster sxi-3 mutant by a hamster Ku86 cDNA. Mutat Res. 1996 May 15;363(1):43–56. doi: 10.1016/0921-8777(95)00060-7. [DOI] [PubMed] [Google Scholar]
  20. Hendrickson E. A., Qin X. Q., Bump E. A., Schatz D. G., Oettinger M., Weaver D. T. A link between double-strand break-related repair and V(D)J recombination: the scid mutation. Proc Natl Acad Sci U S A. 1991 May 15;88(10):4061–4065. doi: 10.1073/pnas.88.10.4061. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Hendrickson E. A., Schatz D. G., Weaver D. T. The scid gene encodes a trans-acting factor that mediates the rejoining event of Ig gene rearrangement. Genes Dev. 1988 Jul;2(7):817–829. doi: 10.1101/gad.2.7.817. [DOI] [PubMed] [Google Scholar]
  22. Hesse J. E., Lieber M. R., Gellert M., Mizuuchi K. Extrachromosomal DNA substrates in pre-B cells undergo inversion or deletion at immunoglobulin V-(D)-J joining signals. Cell. 1987 Jun 19;49(6):775–783. doi: 10.1016/0092-8674(87)90615-5. [DOI] [PubMed] [Google Scholar]
  23. Hesse J. E., Lieber M. R., Mizuuchi K., Gellert M. V(D)J recombination: a functional definition of the joining signals. Genes Dev. 1989 Jul;3(7):1053–1061. doi: 10.1101/gad.3.7.1053. [DOI] [PubMed] [Google Scholar]
  24. Itoh M., Hamatani K., Komatsu K., Araki R., Takayama K., Abe M. Human chromosome 8 (p12-->q22) complements radiosensitivity in the severe combined immune deficiency (SCID) mouse. Radiat Res. 1993 Jun;134(3):364–368. [PubMed] [Google Scholar]
  25. Jeggo P. A. DNA-PK: at the cross-roads of biochemistry and genetics. Mutat Res. 1997 Jun 9;384(1):1–14. doi: 10.1016/s0921-8777(97)00009-8. [DOI] [PubMed] [Google Scholar]
  26. Kemp L. M., Sedgwick S. G., Jeggo P. A. X-ray sensitive mutants of Chinese hamster ovary cells defective in double-strand break rejoining. Mutat Res. 1984 Nov-Dec;132(5-6):189–196. doi: 10.1016/0167-8817(84)90037-3. [DOI] [PubMed] [Google Scholar]
  27. Kirchgessner C. U., Tosto L. M., Biedermann K. A., Kovacs M., Araujo D., Stanbridge E. J., Brown J. M. Complementation of the radiosensitive phenotype in severe combined immunodeficient mice by human chromosome 8. Cancer Res. 1993 Dec 15;53(24):6011–6016. [PubMed] [Google Scholar]
  28. Koi M., Shimizu M., Morita H., Yamada H., Oshimura M. Construction of mouse A9 clones containing a single human chromosome tagged with neomycin-resistance gene via microcell fusion. Jpn J Cancer Res. 1989 May;80(5):413–418. doi: 10.1111/j.1349-7006.1989.tb02329.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Komatsu K., Ohta T., Jinno Y., Niikawa N., Okumura Y. Functional complementation in mouse-human radiation hybrids assigns the putative murine scid gene to the pericentric region of human chromosome 8. Hum Mol Genet. 1993 Jul;2(7):1031–1034. doi: 10.1093/hmg/2.7.1031. [DOI] [PubMed] [Google Scholar]
  30. Kurimasa A., Nagata Y., Shimizu M., Emi M., Nakamura Y., Oshimura M. A human gene that restores the DNA-repair defect in SCID mice is located on 8p11.1-->q11.1. Hum Genet. 1994 Jan;93(1):21–26. doi: 10.1007/BF00218907. [DOI] [PubMed] [Google Scholar]
  31. Lee S. E., Pulaski C. R., He D. M., Benjamin D. M., Voss M., Um J., Hendrickson E. A. Isolation of mammalian cell mutants that are X-ray sensitive, impaired in DNA double-strand break repair and defective for V(D)J recombination. Mutat Res. 1995 May;336(3):279–291. doi: 10.1016/0921-8777(95)00002-2. [DOI] [PubMed] [Google Scholar]
  32. Lees-Miller S. P., Godbout R., Chan D. W., Weinfeld M., Day R. S., 3rd, Barron G. M., Allalunis-Turner J. Absence of p350 subunit of DNA-activated protein kinase from a radiosensitive human cell line. Science. 1995 Feb 24;267(5201):1183–1185. doi: 10.1126/science.7855602. [DOI] [PubMed] [Google Scholar]
  33. Lieber M. R., Hesse J. E., Lewis S., Bosma G. C., Rosenberg N., Mizuuchi K., Bosma M. J., Gellert M. The defect in murine severe combined immune deficiency: joining of signal sequences but not coding segments in V(D)J recombination. Cell. 1988 Oct 7;55(1):7–16. doi: 10.1016/0092-8674(88)90004-9. [DOI] [PubMed] [Google Scholar]
  34. Lin J. Y., Mühlmann-Diaz M. C., Stackhouse M. A., Robinson J. F., Taccioli G. E., Chen D. J., Bedford J. S. An ionizing radiation-sensitive CHO mutant cell line: irs-20. IV. Genetic complementation, V(D)J recombination and the scid phenotype. Radiat Res. 1997 Feb;147(2):166–171. [PubMed] [Google Scholar]
  35. Malynn B. A., Blackwell T. K., Fulop G. M., Rathbun G. A., Furley A. J., Ferrier P., Heinke L. B., Phillips R. A., Yancopoulos G. D., Alt F. W. The scid defect affects the final step of the immunoglobulin VDJ recombinase mechanism. Cell. 1988 Aug 12;54(4):453–460. doi: 10.1016/0092-8674(88)90066-9. [DOI] [PubMed] [Google Scholar]
  36. Nussenzweig A., Chen C., da Costa Soares V., Sanchez M., Sokol K., Nussenzweig M. C., Li G. C. Requirement for Ku80 in growth and immunoglobulin V(D)J recombination. Nature. 1996 Aug 8;382(6591):551–555. doi: 10.1038/382551a0. [DOI] [PubMed] [Google Scholar]
  37. Nussenzweig A., Sokol K., Burgman P., Li L., Li G. C. Hypersensitivity of Ku80-deficient cell lines and mice to DNA damage: the effects of ionizing radiation on growth, survival, and development. Proc Natl Acad Sci U S A. 1997 Dec 9;94(25):13588–13593. doi: 10.1073/pnas.94.25.13588. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Oettinger M. A., Schatz D. G., Gorka C., Baltimore D. RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination. Science. 1990 Jun 22;248(4962):1517–1523. doi: 10.1126/science.2360047. [DOI] [PubMed] [Google Scholar]
  39. Ouyang H., Nussenzweig A., Kurimasa A., Soares V. C., Li X., Cordon-Cardo C., Li W. h., Cheong N., Nussenzweig M., Iliakis G. Ku70 is required for DNA repair but not for T cell antigen receptor gene recombination In vivo. J Exp Med. 1997 Sep 15;186(6):921–929. doi: 10.1084/jem.186.6.921. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Pang D., Yoo S., Dynan W. S., Jung M., Dritschilo A. Ku proteins join DNA fragments as shown by atomic force microscopy. Cancer Res. 1997 Apr 15;57(8):1412–1415. [PubMed] [Google Scholar]
  41. Peterson S. R., Stackhouse M., Waltman M. J., Chen F., Sato K., Chen D. J. Characterization of two DNA double-stranded break repair-deficient cell lines that express inactive DNA-dependent protein kinase catalytic subunits. J Biol Chem. 1997 Apr 11;272(15):10227–10231. doi: 10.1074/jbc.272.15.10227. [DOI] [PubMed] [Google Scholar]
  42. Priestley A., Beamish H. J., Gell D., Amatucci A. G., Muhlmann-Diaz M. C., Singleton B. K., Smith G. C., Blunt T., Schalkwyk L. C., Bedford J. S. Molecular and biochemical characterisation of DNA-dependent protein kinase-defective rodent mutant irs-20. Nucleic Acids Res. 1998 Apr 15;26(8):1965–1973. doi: 10.1093/nar/26.8.1965. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Ramsden D. A., Gellert M. Ku protein stimulates DNA end joining by mammalian DNA ligases: a direct role for Ku in repair of DNA double-strand breaks. EMBO J. 1998 Jan 15;17(2):609–614. doi: 10.1093/emboj/17.2.609. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Sadofsky M. J., Hesse J. E., McBlane J. F., Gellert M. Expression and V(D)J recombination activity of mutated RAG-1 proteins. Nucleic Acids Res. 1993 Dec 11;21(24):5644–5650. doi: 10.1093/nar/21.24.5644. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Shin E. K., Perryman L. E., Meek K. A kinase-negative mutation of DNA-PK(CS) in equine SCID results in defective coding and signal joint formation. J Immunol. 1997 Apr 15;158(8):3565–3569. [PubMed] [Google Scholar]
  46. Smider V., Chu G. The end-joining reaction in V(D)J recombination. Semin Immunol. 1997 Jun;9(3):189–197. doi: 10.1006/smim.1997.0070. [DOI] [PubMed] [Google Scholar]
  47. Stackhouse M. A., Bedford J. S. An ionizing radiation-sensitive mutant of CHO cells: irs-20. I. Isolation and initial characterization. Radiat Res. 1993 Nov;136(2):241–249. [PubMed] [Google Scholar]
  48. Stamato T. D., Weinstein R., Giaccia A., Mackenzie L. Isolation of cell cycle-dependent gamma ray-sensitive Chinese hamster ovary cell. Somatic Cell Genet. 1983 Mar;9(2):165–173. doi: 10.1007/BF01543175. [DOI] [PubMed] [Google Scholar]
  49. Taccioli G. E., Cheng H. L., Varghese A. J., Whitmore G., Alt F. W. A DNA repair defect in Chinese hamster ovary cells affects V(D)J recombination similarly to the murine scid mutation. J Biol Chem. 1994 Mar 11;269(10):7439–7442. [PubMed] [Google Scholar]
  50. Verhaegh G. W., Jongmans W., Morolli B., Jaspers N. G., van der Schans G. P., Lohman P. H., Zdzienicka M. Z. A novel type of X-ray-sensitive Chinese hamster cell mutant with radioresistant DNA synthesis and hampered DNA double-strand break repair. Mutat Res. 1995 Sep;337(2):119–129. doi: 10.1016/0921-8777(95)00017-e. [DOI] [PubMed] [Google Scholar]
  51. Warters R. L., Barrows L. R., Chen D. J. DNA double-strand break repair in two radiation-sensitive mouse mammary carcinoma cell lines. Mutat Res. 1995 Jan;336(1):1–7. [PubMed] [Google Scholar]
  52. Weaver D. T. Regulation and repair of double-strand DNA breaks. Crit Rev Eukaryot Gene Expr. 1996;6(4):345–375. doi: 10.1615/critreveukargeneexpr.v6.i4.20. [DOI] [PubMed] [Google Scholar]
  53. White R. J., Gottlieb T. M., Downes C. S., Jackson S. P. Mitotic regulation of a TATA-binding-protein-containing complex. Mol Cell Biol. 1995 Apr;15(4):1983–1992. doi: 10.1128/mcb.15.4.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  54. Whitmore G. F., Varghese A. J., Gulyas S. Cell cycle responses of two X-ray sensitive mutants defective in DNA repair. Int J Radiat Biol. 1989 Nov;56(5):657–665. doi: 10.1080/09553008914551881. [DOI] [PubMed] [Google Scholar]
  55. Wiegant J., Ried T., Nederlof P. M., van der Ploeg M., Tanke H. J., Raap A. K. In situ hybridization with fluoresceinated DNA. Nucleic Acids Res. 1991 Jun 25;19(12):3237–3241. doi: 10.1093/nar/19.12.3237. [DOI] [PMC free article] [PubMed] [Google Scholar]
  56. Wiler R., Leber R., Moore B. B., VanDyk L. F., Perryman L. E., Meek K. Equine severe combined immunodeficiency: a defect in V(D)J recombination and DNA-dependent protein kinase activity. Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11485–11489. doi: 10.1073/pnas.92.25.11485. [DOI] [PMC free article] [PubMed] [Google Scholar]
  57. Yaneva M., Kowalewski T., Lieber M. R. Interaction of DNA-dependent protein kinase with DNA and with Ku: biochemical and atomic-force microscopy studies. EMBO J. 1997 Aug 15;16(16):5098–5112. doi: 10.1093/emboj/16.16.5098. [DOI] [PMC free article] [PubMed] [Google Scholar]
  58. Zdzienicka M. Z., Jongmans W., Oshimura M., Priestley A., Whitmore G. F., Jeggo P. A. Complementation analysis of the murine scid cell line. Radiat Res. 1995 Sep;143(3):238–244. [PubMed] [Google Scholar]
  59. Zdzienicka M. Z., Simons J. W. Mutagen-sensitive cell lines are obtained with a high frequency in V79 Chinese hamster cells. Mutat Res. 1987 Jun;178(2):235–244. doi: 10.1016/0027-5107(87)90274-0. [DOI] [PubMed] [Google Scholar]
  60. Zdzienicka M. Z., Tran Q., van der Schans G. P., Simons J. W. Characterization of an X-ray-hypersensitive mutant of V79 Chinese hamster cells. Mutat Res. 1988 Nov;194(3):239–249. doi: 10.1016/0167-8817(88)90025-9. [DOI] [PubMed] [Google Scholar]
  61. Zhu C., Bogue M. A., Lim D. S., Hasty P., Roth D. B. Ku86-deficient mice exhibit severe combined immunodeficiency and defective processing of V(D)J recombination intermediates. Cell. 1996 Aug 9;86(3):379–389. doi: 10.1016/s0092-8674(00)80111-7. [DOI] [PubMed] [Google Scholar]

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