Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1998 Aug 1;26(15):3468–3472. doi: 10.1093/nar/26.15.3468

Highly accurate analysis of heterozygous loci bysingle cell PCR.

A M Garvin 1, W Holzgreve 1, S Hahn 1
PMCID: PMC147732  PMID: 9671806

Abstract

Single cell PCR is a powerful method for determining the genetic properties of individual cells. In the instance of heterozygous loci, however, preferential amplification of one allele can lead to allele drop out (ADO) of the other allele. Fortunately ADO does not occur in all amplifications, and is usually random when it does occur, with both alleles being equally susceptible to drop out. Therefore pooling of results from multiple independently amplified cells should greatly improve the analysis of diallelic loci, and the misdiagnosis rate of diallelic loci should decrease exponentially with the number of cells analysed. We have shown that this is true and that multiplex PCR allows for the simultaneous identification of a cell in a mixture of cells using microsatellite loci known to be informative, and accurate genotyping at other loci. This approach has practical applications to non-invasive prenatal diagnosis where small numbers of fetal cells in the presence of maternal cells must be both identified and genotyped at loci involved in genetic disease.

Full Text

The Full Text of this article is available as a PDF (130.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bianchi D. W., Flint A. F., Pizzimenti M. F., Knoll J. H., Latt S. A. Isolation of fetal DNA from nucleated erythrocytes in maternal blood. Proc Natl Acad Sci U S A. 1990 May;87(9):3279–3283. doi: 10.1073/pnas.87.9.3279. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Cheung M. C., Goldberg J. D., Kan Y. W. Prenatal diagnosis of sickle cell anaemia and thalassaemia by analysis of fetal cells in maternal blood. Nat Genet. 1996 Nov;14(3):264–268. doi: 10.1038/ng1196-264. [DOI] [PubMed] [Google Scholar]
  3. Findlay I., Ray P., Quirke P., Rutherford A., Lilford R. Allelic drop-out and preferential amplification in single cells and human blastomeres: implications for preimplantation diagnosis of sex and cystic fibrosis. Hum Reprod. 1995 Jun;10(6):1609–1618. doi: 10.1093/humrep/10.6.1609. [DOI] [PubMed] [Google Scholar]
  4. Gänshirt-Ahlert D., Börjesson-Stoll R., Burschyk M., Dohr A., Garritsen H. S., Helmer E., Miny P., Velasco M., Walde C., Patterson D. Detection of fetal trisomies 21 and 18 from maternal blood using triple gradient and magnetic cell sorting. Am J Reprod Immunol. 1993 Sep-Oct;30(2-3):194–201. doi: 10.1111/j.1600-0897.1993.tb00620.x. [DOI] [PubMed] [Google Scholar]
  5. Gänshirt D., Garritsen H. S., Holzgreve W. Fetal cells in maternal blood. Curr Opin Obstet Gynecol. 1995 Apr;7(2):103–108. doi: 10.1097/00001703-199504000-00005. [DOI] [PubMed] [Google Scholar]
  6. Holzgreve W., Garritsen H. S., Ganshirt-Ahlert D. Fetal cells in the maternal circulation. J Reprod Med. 1992 May;37(5):410–418. [PubMed] [Google Scholar]
  7. Li H. H., Gyllensten U. B., Cui X. F., Saiki R. K., Erlich H. A., Arnheim N. Amplification and analysis of DNA sequences in single human sperm and diploid cells. Nature. 1988 Sep 29;335(6189):414–417. doi: 10.1038/335414a0. [DOI] [PubMed] [Google Scholar]
  8. Ray P. F., Handyside A. H. Increasing the denaturation temperature during the first cycles of amplification reduces allele dropout from single cells for preimplantation genetic diagnosis. Mol Hum Reprod. 1996 Mar;2(3):213–218. doi: 10.1093/molehr/2.3.213. [DOI] [PubMed] [Google Scholar]
  9. Ray P. F., Winston R. M., Handyside A. H. Reduced allele dropout in single-cell analysis for preimplantation genetic diagnosis of cystic fibrosis. J Assist Reprod Genet. 1996 Feb;13(2):104–106. doi: 10.1007/BF02072529. [DOI] [PubMed] [Google Scholar]
  10. Risch N., de Leon D., Ozelius L., Kramer P., Almasy L., Singer B., Fahn S., Breakefield X., Bressman S. Genetic analysis of idiopathic torsion dystonia in Ashkenazi Jews and their recent descent from a small founder population. Nat Genet. 1995 Feb;9(2):152–159. doi: 10.1038/ng0295-152. [DOI] [PubMed] [Google Scholar]
  11. Weber J. L., May P. E. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet. 1989 Mar;44(3):388–396. [PMC free article] [PubMed] [Google Scholar]
  12. Zheng Y. L., Carter N. P., Price C. M., Colman S. M., Milton P. J., Hackett G. A., Greaves M. F., Ferguson-Smith M. A. Prenatal diagnosis from maternal blood: simultaneous immunophenotyping and FISH of fetal nucleated erythrocytes isolated by negative magnetic cell sorting. J Med Genet. 1993 Dec;30(12):1051–1056. doi: 10.1136/jmg.30.12.1051. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES