Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 2006 Jul;188(14):5266–5272. doi: 10.1128/JB.01566-05

Glycogen Phosphorylase, the Product of the glgP Gene, Catalyzes Glycogen Breakdown by Removing Glucose Units from the Nonreducing Ends in Escherichia coli

Nora Alonso-Casajús 1,, David Dauvillée 3,, Alejandro Miguel Viale 2, Francisco José Muñoz 1, Edurne Baroja-Fernández 1, María Teresa Morán-Zorzano 1, Gustavo Eydallin 1, Steven Ball 3*, Javier Pozueta-Romero 1,*
PMCID: PMC1539952  PMID: 16816199

Abstract

To understand the biological function of bacterial glycogen phosphorylase (GlgP), we have produced and characterized Escherichia coli cells with null or altered glgP expression. glgP deletion mutants (ΔglgP) totally lacked glycogen phosphorylase activity, indicating that all the enzymatic activity is dependent upon the glgP product. Moderate increases of glycogen phosphorylase activity were accompanied by marked reductions of the intracellular glycogen levels in cells cultured in the presence of glucose. In turn, both glycogen content and rates of glycogen accumulation in ΔglgP cells were severalfold higher than those of wild-type cells. These defects correlated with the presence of longer external chains in the polysaccharide accumulated by ΔglgP cells. The overall results thus show that GlgP catalyzes glycogen breakdown and affects glycogen structure by removing glucose units from the polysaccharide outer chains in E. coli.


Glycogen is a branched homopolysaccharide of α-1,4-linked glucose subunits with α-1,6-linked glucose at the branching points. Synthesized by glycogen synthase (GlgA; EC 2.4.1.21) using ADP-glucose (ADPG) as the sugar donor molecule, the accumulation of this polyglucan occurs under conditions of limited growth in the presence of an excess carbon source (44).

Regulation of glycogen biosynthesis in Escherichia coli involves a complex assemblage of factors that are adjusted to the physiological status of the cell. At the level of enzyme activity, for instance, the glycogen biosynthetic process is subjected to the regulation of ADPG synthesizing and cleaving enzymes, i.e., ADPG pyrophosphorylase (GlgC; EC 2.7.7.27) (5) and ADP-sugar pyrophosphatase (AspP; EC 3.6.1.21) (41), respectively. Moreover, depending on the carbon source, phosphoglucomutase (PGM; EC 2.7.5.1) has been shown to limit the glycogen biosynthetic process (1, 13). At the level of gene expression, the gluconeogenic process depends on the regulation of glgBX (coding, respectively, for the glycogen branching and debranching enzymes), glgS and glgCAP operons (34, 37, 44), the latter being regulated by cyclic AMP, GDP 3′-diphosphate, and the carbon storage regulator CsrA (3, 47, 54).

glgCAP encodes the two anabolic enzymes required for glycogen synthesis, GlgC and GlgA. Surprisingly at first glance, however, this operon also encodes the presumed catabolic enzyme glycogen phosphorylase (GlgP; EC 2.4.1.1) (46). This enzyme belongs to a structurally related and ubiquitous group of proteins that are generally regarded as glucan-degrading enzymes that catalyze the production of glucose-1-phosphate (G1P) by the reversible cleavage of α-1,4 bonds at the nonreducing ends of polyglucans, such as maltodextrins, starch, and glycogen (14, 20, 36).

The highly regulated muscle and liver glycogen phosphorylases are by far the best understood and most extensively studied members of the glucan phosphorylases group, their involvement in mammalian glycogen breakdown being well documented (6, 9, 10, 16, 40, 42). By contrast, despite the fact that plant glucan phosphorylases are assumed to be involved in generating G1P, some of them have been shown to play a pivotal role in processes such as tolerance to abiotic stress, flowering, and seed growth (28, 50, 52, 56). Despite intensive efforts, a case for a function of plant starch phosphorylases remains to be made.

In contrast to the case of mammalian glycogen phosphorylases, the role of the bacterial GlgP in glycogen metabolism is not well understood. Palmer et al. (43), for instance, suggested that GlgP does not play an important role in glycogen breakdown in E. coli. In clear contrast, and based on both its structural similarities with the mammalian counterpart and on the intracellular orthophosphate (Pi)-to-G1P ratio, bacterial GlgP has generally been suggested to recess the outer glycogen chains down to a length of four glucose residues from the branch point and, in combination with a debranching enzyme (GlgX), to participate in the slow degradation of glycogen during extended periods of substrate deprivation (4, 18, 21, 24, 38, 54, 55). The phenotype recently recorded for GlgX-defective E. coli mutants (24) is certainly consistent with this view. Nevertheless, the implication of bacterial GlgP in glycogen breakdown has never been formally demonstrated. Indeed, production and biochemical characterization of both glgP-less and -overexpressing cells are still lacking, and the role of GlgP in regulating glycogen breakdown must be considered as only imaginable and based on indirect evidence (4, 49). Significantly, Boss and coworkers have provided evidence that GlgP is involved in the production of maltodextrins acting as substrates and inducers for maltodextrin metabolism enzymes (12, 15, 25, 27, 29).

To gain insight into both functional and biological aspects of bacterial GlgP, we have characterized cells with altered glycogen phosphorylase activities. Results presented in this work demonstrate that GlgP catalyzes glycogen breakdown and affects glycogen structure by removing glucose units from the polysaccharide outer chains in E. coli.

MATERIALS AND METHODS

Bacterial strains, plasmids, and culture media.

Bacterial strains and plasmids used in this work and their characteristics are summarized in Table 1. Plasmids were propagated in E. coli XL1-Blue with the appropriate antibiotic selection. DNA manipulations were conducted by following the procedures indicated by Ausubel et al. (2). For biochemical analyses, cells were grown in either liquid Kornberg (1.1% K2HPO4, 0.85% KH2PO4, 0.6% [wt/vol] yeast extract) medium or M9 (48 mM Na2HPO4, 22 mM KH2PO4, 7 mM NaCl, 17 mM NH4Cl, 0.1 mM CaCl2, 2 mM MgSO4) minimal medium supplemented with 50 mM glucose. When indicated, cells were cultured with the indicated amounts of arabinose. LB medium (1% tryptone, 1% NaCl, 0.5% yeast extract) was used for routine laboratory cultures. In every case, cells were grown aerobically with rapid gyratory shaking at 37°C after inoculation with 1 volume of an overnight culture per 50 volumes of fresh medium. Solid medium was prepared by addition of 1.5% bacteriological agar to liquid medium.

TABLE 1.

Bacterial strains and plasmids used in this study

Designation Relevant genotype or description Source
Bacteria
    B/r B derivative, lon-11 sulA1 λrmal (Ts) CGSC
    B/r ΔglgP B/r ΔglgP::Kanr, glgP in the glgCAP operon replaced by a kanamycin resistance cassette This work
    B/r ΔglgCAP B/r ΔglgCAP::Kanr, glgCAP operon replaced by a kanamycin resistance cassette This work
    BL21(DE3) C43 F′ ompT hsdSB(rB mB) gal dcm (DE3); BL21(DE3) derivative Avidis
    BL21(DE3) C43 ΔglgP BL21(DE3) C43 ΔglgP::Kanr This work
    BL21(DE3) C43 ΔglgCAP BL21(DE3) C43 ΔglgCAP::Kanr This work
    TG1 K-12 derivative; F′ traD36 lacIq Δ(lacZ)M15 proBA/supE Δ(hsdM-mcrB)5 [rk mk mcrB] thi Δ(lac-proBA) Pasteur Institute
    TG1 ΔglgP TG1 ΔglgP::Kanr This work
    BW25113 lacIqrrnBT14 ΔlacZWJ16hsdR514 ΔaraBADAH33 ΔrhaBADLD78 23
    BW25113 ΔglgP BW25113 ΔglgP::Kanr This work
Plasmids
    pBAD-18 Expression plasmid, Ampr 33
    pBAD-GlgP PBAD-18 directing glgP expression This work
    pET-15b Expression plasmid, Ampr Novagen
    pET-GlgP PET-15b directing glgP expression This work

glgP and glgCAP disruptions.

Insertional mutagenesis of the glgCAP operon and glgP was carried out by using the method developed by Datsenko and Wanner (23). A selectable antibiotic resistance gene was generated by PCR from a freshly isolated colony of E. coli MC4100 containing a chromosomally located kanamycin resistance cassette, using 80-nucleotide-long primer pairs that included 60-nucleotide homology extensions for the targeted locus and 20-nucleotide priming sequences for the kanamycin resistance gene (Table 2). glgCAP and glgP deletion mutants (ΔglgCAP and ΔglgP, respectively) were confirmed by both Southern hybridization and PCR using glgCAP- and glgP-specific primers, respectively.

TABLE 2.

Primer pairs for glgCAP and glgP disruptiona

Locus Direction Sequence
glgCAP Forward GTG CAG CAC ATT CAG CGC GGC TGG TCA TTC TTT AAT GAA GAA ATG AAC GAG TTT GTC GAT AAA GCC ACG TTG TGT CTC AA
Reverse ATT CGC ACC GTC CAA CGT ACC GAT AGT CAG CGC ACC GTT AAG CGC AAA CTT CAT GTT ACT GCG CTG AGG TCT GCC TCG TG
glgP Forward ACG TTA GGG TTG CCG GGG CGC GGT TAC GGC ATC CGC TAT GAC TAC GGT ATG TTC AAG CAG AAA GCC ACG TTG TGT CTC AA
Reverse ATT CGC ACC GTC CAA CGT ACC GAT AGT CAG CGC ACC GTT AAG CGC AAA CTT CAT GTT ACT GCG CTG AGG TCT GCC TCG TG
a

Priming sequences for the kanamycin resistance gene are indicated in bold.

glgP expression.

glgP was amplified by PCR using the chromosomal DNA of E. coli BL21(DE3)C43 as template and the following primers: forward, 5′-GCTAGCAGGAGCTCGAGTCCATGAATGCTCCGTTTACATATTC-3′; reverse, 5′-GGATCCTTACAATCTCACCGGATCGATATGC-3′.

The ca. 2.5-kb PCR product thus obtained was cloned in the pGEM-T Easy vector (Promega) to create pG-glgP. glgP was subsequently cloned into either pET-15b (Novagen) or pBAD-18 (a pBAD/His derivative; Invitrogen) expression vectors (33), as illustrated in Fig. S1 and S2 in the supplemental material, to produce pET-glgP and pBAD-glgP, respectively. These plasmids were then used to transform cells by electroporation.

Production and purification of a recombinant GlgP.

His-tagged GlgP was purified using BL21(DE3)C43 transformed with pET-glgP. Cells were grown in LB medium containing 0.1 mg/ml of ampicillin to an absorbance at 600 nm of about 0.6, and then 0.5 mM isopropyl-β-d-thiogalactopyranoside was added to the culture medium. After 3 hours, the cells accumulated a protein whose size (ca. 90 kDa) was consistent with the predicted molecular mass (92.3 kDa) of the glgP gene product (see Fig. S3 in the supplemental material). One hundred milliliters of cultured cells was centrifuged at 6,000 × g for 10 min. The pelleted bacteria were resuspended in 4 ml of His-bind binding buffer (Novagen), sonicated, and centrifuged at 10,000 × g for 10 min. The supernatant thus obtained was subjected to His-bind chromatography (Novagen). The eluted protein was then rapidly desalted by ultrafiltration on a Centricon YM-10 filter (Amicon, Bedford, MA).

Enzyme assays.

The following enzymes were assayed at 37°C according to the indicated references: GlgC (48), AspP (41), GlgA (35), and PGM (1). GlgP was assayed in the direction of glucan breakdown by using a two-step determination of G1P. In step one, the reaction mixture (50 μl) contained 50 mM HEPES (pH 7.5), 30 mM Na-phosphate buffer (pH 7.5), glycogen (equivalent to 10 mM glucose), and protein extract. After 15 min of incubation, the reaction was stopped by boiling for 2 min. The G1P liberated was determined by using either one of the following methods.

(i) Assay A.

Spectrophotometrically, assay A was conducted with a 300-μl mixture containing 50 mM HEPES (pH 7.0), 1 mM EDTA, 2 mM MgCl2, 15 mM KCl, 0.6 mM NAD+, 1 U each of desalted PGM (P3397; Sigma) and glucose-6-phosphate dehydrogenase from Leuconostoc mesenteroides (G8404; Sigma), and 30 μl of the mixture from the step one reaction. After 20 min of incubation, the NADH production was monitored at 340 nm by using a Multiskan EX spectrophotometer (Labsystems, Chicago, Ill.).

(ii) Assay B.

Assay B entailed high-performance liquid chromatography with pulsed amperometric detection of G1P on a DX-500 Dionex system fitted to a Carbo-Pac PA10 column (4 by 250 mm) (7).

One unit of enzyme activity was defined as the amount of enzyme that catalyzes the production of 1 μmol of product per min.

Analytical procedures.

Bacterial growth was determined spectrophotometrically by following the absorbance at 600 nm. Protein content was measured by the Bradford method using a Bio-Rad prepared reagent. Glycogen was extracted and measured as described by Romeo et al. (48). Iodine staining of colonies on solid Kornberg medium was performed using iodine vapor essentially as described in references 26 and 48.

CLDs of ΔglgP and WT glycogens.

Glycogens from wild-type (WT) and ΔglgP cells were purified as previously described (24). The purified polysaccharides were then subjected to enzymatic debranching by incubation overnight at 42°C in the presence of 20 U of isoamylase (Megazyme International Ireland Ltd.) from Klebsiella pneumoniae in 55 mM sodium acetate pH 3.5 buffer. The chain length distribution (CLD) of glycogen β-limit dextrins was obtained with the same procedure except that the purified glycogens were subjected to β-amylolysis prior to debranching. Two milligrams of purified glycogen was incubated with 17 U of β-amylase from sweet potato (Sigma, St. Louis) overnight in 55 mM sodium acetate pH 4.6 buffer. The reaction was stopped by incubation of the samples during 5 min at 100°C. The β-limit dextrins obtained were then dialyzed versus the same buffer but at pH 3.5.

The CLDs were then analyzed by fluorophore-assisted capillary electrophoresis (FACE). Glucans were first derivatized with 8-amino-1,3,6-pyrenetrisulfonic acid (APTS) according to the manufacturer's recommendations (Beckman Coulter, Fullerton, CA). Briefly, 2 μl APTS in 15% acetic acid solution and 2 μl of 1 M NaBH3CN in tetrahydrofolate were added, and the coupling reaction was allowed overnight at 37°C in the dark. Separation and quantification of APTS-coupled glucans were carried out on a P/ACE system 5000 (Beckman Coulter) equipped with a laser-induced fluorescence system using a 4-mW argon ion laser. The excitation wavelength was 488 nm, and the fluorescence emitted at 520 nm was recorded on the Beckman P/ACE station software system (version 1.0). Uncoated fused silica capillaries of 57 cm length by 75-μm inner diameter were used. Running buffers were from Beckman Coulter. Samples were loaded into the capillaries by electroinjection at 10 kV for 10 s, and a voltage of 30 kV was applied for 30 min at a constant temperature of 25°C.

EM analyses.

Electron microscopy (EM) was done as described by Bonafonte et al. (11). Cells entering the stationary phase of growth were prefixed with 4% glutaraldehyde in 0.1 M cacodylate buffer (pH 7.3) for 2 h at 4°C, washed in 0.25 M sucrose, 0.1 M cacodylate buffer, and postfixed in 1% OsO4 in phosphate buffer (pH 7.3) at 4°C. After two washes with sodium Veronal (pH 7.4), the cells were embedded in 2% molten Noble agar. Sections were treated with 1% periodic acid and then with sodium chlorite. The gel was dehydrated and embedded in Epon-812, and ultrathin sections were placed on nickel grids, poststained for 30 min with uranyl acetate and for 15 min with lead citrate, and observed under a Zeiss EM 10CR electron microscope.

RESULTS AND DISCUSSION

All the glycogen phosphorylase activity in E. coli is catalyzed by GlgP.

ΔglgP- and glgP-overexpressing cells were produced as described in Materials and Methods and assayed for glycogen phosphorylase activity in the glycogen breakdown direction. WT cells showed readily measurable enzymatic activities (ca. 10 mU/mg protein). In clear contrast, glycogen phosphorylase activity was undetectable in the ΔglgP cells. In addition, glgP-overexpressing cells exhibited a ca. 20-fold increase of enzymatic activity compared to WT cells. The overall results thus show that most, if not all, glycogen phosphorylase activity in E. coli grown on glucose-containing medium is catalyzed by the glgP gene product.

GlgP catalyzes glycogen breakdown in E. coli.

To elucidate the biological function of GlgP, we compared the glycogen contents between WT cells and cells with altered glgP expression cultured in Kornberg medium supplemented with 50 mM glucose. Bacteria with altered glgP expression displayed a normal growth behavior compared with WT cells (not shown).

Iodine stain analyses on solid cultures (Fig. 1A) revealed that, whereas ΔglgCAP cells lacking the whole glycogen biosynthetic machinery (section 3) gave a negative stain compared with WT cells (section 1), ΔglgP cells (section 2) displayed a dark, brown iodine stain phenotype (22, 31, 39). We then performed time course measurements of the glycogen content in cells with altered glycogen phosphorylase activity cultured in liquid Kornberg medium supplemented with 50 mM glucose (Fig. 1B). These analyses showed that, as confirmed by EM analyses (Fig. 2), ΔglgCAP cells displayed a glycogen-less phenotype. In addition, and consistent with the results presented in Fig. 1, both glycogen amount and the rate of glycogen accumulation in ΔglgP cells were severalfold higher than those of their corresponding WT cells. The overall data thus show that (i) GlgP catalyzes glycogen breakdown in E. coli and (ii) in agreement with previous reports (8, 30, 32), bacterial cells can synthesize and mobilize glycogen simultaneously.

FIG. 1.

FIG. 1.

GlgP catalyzes E. coli glycogen breakdown in vivo. (A) Iodine staining of (1) WT, (2) ΔglgP, and (3) ΔglgCAP cells. Bacteria were cultured overnight in solid Kornberg medium supplemented with 50 mM glucose. (B) Time course analyses of the glycogen content in WT (▵), ΔglgP (□), and ΔglgCAP (○) cells cultured in liquid Kornberg medium supplemented with 50 mM glucose. The bacterial strain employed in this study was B/r. Essentially similar results were obtained with other bacterial strains.

FIG. 2.

FIG. 2.

Glycogen accumulation in GlgP-overproducing cells and ΔglgP and ΔglgCAP E. coli mutants. Cells cultured in liquid Kornberg medium supplemented with 50 mM glucose were analyzed by EM. Upper left quadrant, WT cells transformed with the plasmid vector (pET-15b); upper right quadrant, GlgP-overproducing WT cells (pET-glgP); lower left quadrant, ΔglgCAP mutants; lower right quadrant, ΔglgP mutants. Arrows indicate the position of electron-transparent cytoplasmic glycogen granules resembling “holes” preferentially located at the periphery of E. coli cells (17). The bacterial strain employed in these studies was BL21(DE3)C43. Essentially similar results were obtained with other bacterial strains. Bars, 1 μm.

glgP-overexpressing cells displayed a glycogen-less phenotype similar to that of ΔglgCAP cells at any stage of the culture (Fig. 3A), as also indicated by EM analyses (Fig. 2). Whether small increases in glycogen phosphorylase activity are accompanied by a reduction of glycogen levels was investigated by measuring glycogen contents in cells transformed with pBAD-glgP. These cells were cultured in liquid medium supplemented with 50 mM glucose, and glycogen phosphorylase activity was tuned by varying the concentration of arabinose in the culture medium. As shown in Fig. S4 in the supplemental material, both enzymatic activity and glycogen content in cells transformed with pBAD-18 remained nearly constant at any arabinose concentration. In clear contrast, glycogen phosphorylase activity in cells transformed with pBAD-glgP correlated well with arabinose concentration. Most importantly, intracellular glycogen content in cells transformed with pBAD-glgP showed a reverse correlation with respect to glycogen phosphorylase activity, and small increases of enzymatic activity were accompanied by a marked reduction of the glycogen content (Fig. 3B). The overall data thus show that GlgP exerts a very strong influence on the glycogen breakdown process.

FIG. 3.

FIG. 3.

Increasing glycogen phosphorylase activity leads to a marked reduction of glycogen levels in E. coli. (A) Time course analyses of the glycogen content in cells transformed with either pET-15b (▵) or pET-glgP (○) cultured in liquid M9 minimal medium supplemented with 50 mM glucose. (B) Glycogen phosphorylase activity-dependent glycogen content in cells transformed with pBAD-glgP cultured in liquid M9 minimal medium supplemented with 50 mM glucose. glgP expression was regulated by adding the arabinose concentrations indicated in Fig. S4 in the supplemental material. At the end of the exponential growth phase, cells were harvested and both glycogen content and glycogen phosphorylase activities were measured. The bacterial strain employed in this study was BL21(DE3)C43. Essentially similar results were obtained with other bacterial strains.

GlgP affects glycogen structure by removing glucose units from the polysaccharide outer chains.

The majority of characterized polyglucan phosphorylases are unable to act on chains smaller than five glucose residues in length (12, 50), the same behavior being found in E. coli GlgP (see Table S1 in the supplemental material). According to the generally assumed model of glycogen degradation (4), GlgX would be responsible for cleaving the small maltotretraose stubs produced by GlgP, thereby terminating glycogen breakdown. Both the glycogen excess phenotype and the altered structure of the polysaccharide in E. coli glgX deletion mutants (24) are certainly consistent with this view. In order to study the impact of GlgP absence on the glycogen structure in vivo, we analyzed the degree of polymerization (DP) of glycogen isolated from WT and ΔglgP cells. The results displayed in Fig. 4 clearly show an increase in chains corresponding to a DP of 13 to 30 glucose residues at the expense of chains of six, seven, and eight residues in ΔglgP cells, which is consistent with a function of GlgP in the degradation of the polysaccharide outer chains. These chains would then be elongated by GlgA without being removed by the missing phosphorylase, thereby leading to the observed CLD.

FIG. 4.

FIG. 4.

Chain length distribution of glycogens, determined by FACE (see Materials and Methods). Isoamylase debranched glycogens from both WT and ΔglgP cells were produced as described in Materials and Methods and separated up to DP 30. (A) CLDs expressed on a DP scale (x axis) are displayed as the percentage of total chains, expressed on a molar basis (y scale). (B) Difference plot generated by subtracting the mol% value of the WT at each chain length from the corresponding mol% of the mutant at the corresponding chain length. Dark bars correspond to WT cells, and light bars correspond to ΔglgP cells. The bacterial strain used in this study was TG1. Essentially similar results were obtained with other bacterial strains.

To further prove that the absence of GlgP has the largest impact on the polysaccharide's outer chains, glycogens from WT and ΔglgP cells were subjected to digestion with β-amylase, an exo type of hydrolase that produces β-maltose by digesting the outer chains of glycogen, amylose, and amylopectin. This enzyme is unable to bypass or hydrolyze the α-1,6 linkages and therefore stops two, three, or four residues from the first α-1,6 branch encountered to generate the so-called β-limit dextrin. If the dramatic differences seen in Fig. 4 were essentially confined to the outer chains of the polysaccharide, then the β-limit dextrins obtained from glycogen from WT and ΔglgP cells would have similar CLDs. Results displayed in Fig. 5 clearly show that this is the case, thereby proving that GlgP catalyzes glycogen breakdown by removing glucose units from the polysaccharide outer chains in E. coli.

FIG. 5.

FIG. 5.

CLD of glycogen β-limit dextrins determined by FACE. Isoamylase debranched glycogen β-limit dextrins from both WT and ΔglgP cells were produced as described in Materials and Methods and separated up to DP 20. Chains below DP 5 are not represented because of the very high background due to the presence of hyperabundant chains of DP 2 and 3 generated by the action of β-amylase. Dark bars correspond to WT cells, and light bars correspond to ΔglgP cells. The bacterial strain used in this study was TG1. Essentially similar results were obtained with other bacterial strains.

Regulatory considerations of GlgP.

We have confirmed that changes in the glycogen content in both ΔglgP- and glgP-overexpressing cells grown in the presence of glucose are due to changes in glycogen phosphorylase activities and not to pleiotropic changes in the activities of enzymes closely linked to glycogen biosynthesis. As shown in Table 3, GlgC, GlgA, PGM, and AspP activities in both ΔglgP- and glgP-overexpressing cells did not vary much with respect to those of WT cells. Remarkably, these analyses also revealed that maximum catalytic glycogen phosphorylase activities in WT cells are higher than those of gluconeogenic enzymes, such as GlgC and GlgA, during glycogen accumulation. This, and the fact that a moderate increase of glycogen phosphorylase activity leads to a dramatic reduction of glycogen content (Fig. 3B), indicates that, unless GlgP is highly regulated in the bacterial cell, glycogen accumulation would be prevented. In this context, it is noteworthy that, in contrast to the highly regulated eukaryotic glucan phosphorylases, bacterial phosphorylases show no apparent regulatory properties and are thought to be exclusively controlled at the level of gene expression (12, 36, 42, 49, 53). However, several reports have suggested that bacterial GlgPs may be subjected to posttranslational regulation. Chen and Segel (19), for instance, showed that E. coli glycogen phosphorylase activity in the glycogen synthetic direction can be moderately activated by AMP and inhibited by ADPG. However, our results indicate that GlgP does not exhibit regulatory properties with respect to substrates of physiological relevance, such as AMP, ADPG, UDP-glucose, glucose, and hexose-Ps, when assayed in the glycogen breakdown direction (see Table S2 in the supplemental material). GlgP could also be allosterically modulated in E. coli as a result of its interaction with the histidine phosphocarrier protein (HPr) of the phosphotransferase system (51). Other models of bacterial GlgP regulation are based on the occurrence of both particle-associated and soluble GlgP states, whose balance has been proposed to control glycogen accumulation (45). Needless to say, possible regulatory properties of GlgP and its importance in the control of glycogen accumulation need to be further investigated.

TABLE 3.

Activities of some enzymes closely linked to glycogen metabolism in transformed BL21(DE3)C43 cellsa

Enzyme Activity (mU/mg of bacterial protein) in cells transformed with:
pET-15b ΔglgP pET-glgP
GlgC 2.0 2.3 1.8
GlgA 1.5 1.7 1.6
GlgP 9.8 BDLb 209
PGM 205 96 160
AspP 9.3 8.9 10
a

BL21(DE3)C43 cells transformed with either pET-15b or pET-glgP and ΔglgP cells entering the stationary phase were assayed.

b

BDL, below the detection limit.

Supplementary Material

[Supplemental material]

Acknowledgments

This research was partially supported by grants BIO2001-1080 and BIO2004-01922 from the Consejo Interministerial de Ciencia y Tecnología and Fondo Europeo de Desarrollo Regional (Spain). A.M.V. expresses his most sincere gratitude to the Spanish Ministry of Culture and Education, to the Consejo Superior de Investigaciones Cientificas, and to the Public University of Navarra for their generous support. M.T.M.-Z. acknowledges a predoctoral FPU student fellowship from the Spanish Ministry of Education, Culture and Sport. G.E. acknowledges a predoctoral fellowship from the Public University of Navarra.

We thank Beatriz Zugasti (I.A., Pamplona, Spain) for expert technical support. We are indebted to Laura Guembe (University of Navarra) for technical assistance in EM analyses. We express our gratitude to M. Berlyn, E. coli Genetic Stock Center (Yale University) and the Pasteur Institute for providing us with the B/r and TG1 cells, respectively.

Footnotes

Supplemental material for this article may be found at http://jb.asm.org/.

REFERENCES

  • 1.Adhya, S., and M. Schwartz. 1971. Phosphoglucomutase mutants of Escherichia coli K-1. J. Bacteriol. 108:621-626. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1990. Current protocols in molecular biology. Wiley Interscience, New York, N.Y.
  • 3.Baker, C. S., I. Morozov, K. Suzuki, T. Romeo, and P. Babitzke. 2002. CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli. Mol. Microbiol. 44:1599-1610. [DOI] [PubMed] [Google Scholar]
  • 4.Ball, S. G., and M. K. Morell. 2003. From bacterial glycogen to starch: understanding the biogenesis of the plant starch granule. Annu. Rev. Plant Biol. 54:207-233. [DOI] [PubMed] [Google Scholar]
  • 5.Ballicora, M. A., A. A. Iglesias, and J. Preiss. 2003. ADP-glucose pyrophosphorylase, a regulatory enzyme for bacterial glycogen synthesis. Microbiol. Mol. Biol. Rev. 67:213-225. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Baqué, S., J. J. Guinovart, and A. M. Gómez-Foix. 1996. Overexpression of muscle glycogen phosphorylase in cultured human muscle fibers causes increased glucose consumption and nonoxidative disposal. J. Biol. Chem. 271:2594-2598. [DOI] [PubMed] [Google Scholar]
  • 7.Baroja-Fernández, E., F. J. Muñoz, T. Saikusa, A. Bastarrica-Berasategui, B. Moreno-Bruna, T. Akazawa, and J. Pozueta-Romero. 2003. Sucrose synthase catalyzes the de novo production of ADP-glucose linked to starch biosynthesis in heterotrophic tissues of plants. Plant Cell Physiol. 44:500-509. [DOI] [PubMed] [Google Scholar]
  • 8.Belanger, A. E., and G. Hatfull. 1999. Exponential-phase glycogen recycling is essential for growth of Mycobacterium smegmatis. J. Bacteriol. 181:6670-6678. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Board, M., M. Hadwen, and L. N. Johnson. 1995. Effects of novel analogues of D-glucose on glycogen phosphorylase activities in crude extracts of liver and skeletal muscle. Eur. J. Biochem. 228:753-761. [DOI] [PubMed] [Google Scholar]
  • 10.Bollen, M., S. Keppens, and W. Stalmans. 1998. Specific features of glycogen metabolism in the liver. Biochem. J. 336:19-31. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Bonafonte, M. A., C. Solano, B. Sesma, M. Alvarez, L. Montuenga, D. García-Ros, and C. Gamazo. 2000. The relationship between glycogen synthesis, biofilm formation and virulence in Salmonella enteritidis. FEMS Microbiol. Lett. 191:31-36. [DOI] [PubMed] [Google Scholar]
  • 12.Boos, W., and H. Shuman. 1998. Maltose/maltodextrin system of Escherichia coli: transport, metabolism, and regulation. Microbiol. Mol. Biol. Rev. 62:204-229. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Brautaset, T., S. B. Petersen, and S. Valla. 2000. In vitro determined kinetic properties of mutant phosphoglucomutases and their effects on sugar catabolism in Escherichia coli. Metabol. Eng. 2:104-114. [DOI] [PubMed] [Google Scholar]
  • 14.Buchbinder, J. L., V. L. Rath, and R. J. Fletterick. 2001. Structural relationships among regulated and unregulated phosphorylases. Annu. Rev. Biophys. Biomol. Struct. 30:191-209. [DOI] [PubMed] [Google Scholar]
  • 15.Bukau, B., M. Ehermann, and W. Boos. 1986. Osmoregulation of the maltose regulon in Escherichia coli. J. Bacteriol. 166:884-891. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.Burwinkel, B., H. D. Bakker, E. Herschkovitz, S. W. Moses, Y. S. Shin, and M. W. Kilimann. 1998. Mutations in the liver glycogen phosphorylase gene (PYGL) underlying glycogenosis type VI. Am. J. Hum. Genet. 62:785-791. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Cedergren, B., and T. Holme. 1959. On the glycogen in Escherichia coli B. Electron microscopy of ultrathin section cells. J. Ultrastruct. Res. 3:70-73. [DOI] [PubMed] [Google Scholar]
  • 18.Chen, G. S., and I. H. Segel. 1968. Escherichia coli polyglucose phosphorylases. Arch. Biochem. Biophys. 127:164-174. [DOI] [PubMed] [Google Scholar]
  • 19.Chen, G. S., and I. H. Segel. 1968. Purification and properties of glycogen phosphorylase from Escherichia coli. Arch. Biochem. Biophys. 127:175-186. [DOI] [PubMed] [Google Scholar]
  • 20.Chia, T., D. Thorneycroft, A. Chapple, G. Messerli, J. Chen, S. C. Zeeman, S. M. Smith, and A. M. Smith. 2004. A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night. Plant J. 37:853-863. [DOI] [PubMed] [Google Scholar]
  • 21.Creuzet-Sigal, N., and C. Frixon. 1977. Catabolism of glycogen in Escherichia coli. FEMS Microbiol. Lett. 1:235-238. [Google Scholar]
  • 22.Damotte, M., J. Cattaneo, N. Sigal, and J. Puig. 1968. Mutants of Escherichia coli K 12 altered in their ability to store glycogen. Biochem. Biophys. Res. Commun. 32:916-920. [DOI] [PubMed] [Google Scholar]
  • 23.Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Dauvillée, D., I. S. Kinderf, Z. Li, B. Kosar-Hashemi, M. S. Samuel, L. Rampling, S. Ball, and M. K. Morell. 2005. Role of the Escherichia coli glgX gene in glycogen metabolism. J. Bacteriol. 187:1465-1473. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Decker, K., R. Peist, J. Reidl, M. Kossmann, B. Brand, and W. Boos. 1993. Maltose and maltotriose can be formed endogenously in Escherichia coli from glucose and glucose-1-phosphate independently of enzymes of the maltose system. J. Bacteriol. 175:5655-5665. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Delrue, B., T. Fontaine, F. Routier, A. Decq, J. M. Wieruszeski, N. Van den Koornhuyse, M. L. Maddelein, B. Fournet, and S. Ball. 1992. Waxy Chlamydomonas reinhardtii monocellular algal mutants defective in amylose biosynthesis and granule-bound starch synthase activity accumulate a structurally modified amylopectin. J. Bacteriol. 174:3612-3620. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Dippel, R., T. Bergmiller, A. Böhm, and W. Boos. 2005. The maltodextrin system of Escherichia coli: glycogen-derived endogenous induction and osmoregulation. J. Bacteriol. 187:8332-8339. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Duwenig, E., M. Steup, L. Willmitzer, and J. Kossmann. 1997. Antisense inhibition of cytosolic phosphorylase in potato plants (Solanum tuberosum L.) affects tuber sprouting and flower formation with only little impact on carbohydrate metabolism. Plant J. 12:323-333. [DOI] [PubMed] [Google Scholar]
  • 29.Ehrmann, M., and W. Boos. 1987. Identification of endogenous inducers of the mal regulon in Escherichia coli. J. Bacteriol. 169:3539-3545. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Gaudet, G., E. Forano, G. Dauphin, and A. M. Delort. 1992. Futile cycling of glycogen in Fibrobacter succinogenes as shown by in situ 1H-NMR and 13C-NMR investigation Eur. J. Biochem. 207:155-162. [DOI] [PubMed] [Google Scholar]
  • 31.Govons, S., R. Vinopal, J. Ingraham, and J. Preiss. 1969. Isolation of mutants of Escherichia coli B altered in their ability to synthesize glycogen. J. Bacteriol. 97:970-972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 32.Guedon, E., M. Desvaux, and H. Petitdemange. 2000. Kinetic analysis of Clostridium cellulolyticum carbohydrate metabolism: importance of glucose 1-phosphate and glucose 6-phosphate branch points for distribution of carbon fluxes inside and outside cells as revealed by steady-state continuous culture. J. Bacteriol. 182:2010-2017. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33.Guzman, L.-M., D. Belin, M. J. Carson, and J. Beckwith. 1995. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J. Bacteriol. 177:4121-4130. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34.Hengge-Aronis, R., and D. Fischer. 1992. Identification and molecular analysis of glgS, a novel growth-phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli. Mol. Microbiol. 6:1877-1886. [DOI] [PubMed] [Google Scholar]
  • 35.Holmes, E., C. Boyer, and J. Preiss. 1982. Immunological characterization of Escherichia coli B glycogen synthase and branching enzyme and comparison with enzymes from other bacteria. J. Bacteriol. 151:1444-1453. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36.Hudson, J. W., G. B. Golding, and M. M. Crerar. 1993. Evolution of allosteric control in glycogen phosphorylase. J. Mol. Biol. 234:700-721. [DOI] [PubMed] [Google Scholar]
  • 37.Kozlov, G., D. Elias, M. Cygler, and K. Gehring. 2004. Structure of GlgS from Escherichia coli suggests a role in protein-protein interactions. BMC Biol. 2:10-16. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38.Krebs, E. G., and J. Preiss. 1975. Regulatory mechanisms in glycogen metabolism, p. 337-389. In J. J. Whelan (ed.), Biochemistry of carbohydrates, vol. 1. MTP international review of science. University Park Press, Baltimore, Md. [Google Scholar]
  • 39.Kuipers, A. G. J., E. Jacobsen, and R. G. F. Visser. 1994. Formation and deposition of amylose in the potato tuber starch granule are affected by the reduction of granule-bound starch synthase gene expression. Plant Cell 4:43-52. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 40.Massillon, D., M. Bollen, H. de Wulf, K. Overloop, F. Vanstapel, P. van Hecke, and W. Stalmans. 1995. Demonstration of a glycogen/glucose-1-phosphate cycle in hepatocytes from fasted rats. Selective inactivation of phosphorylase by 2-deoxy-2-fluoro-alpha-D-glucopyranosyl fluoride. J. Biol. Chem. 270:19351-19356. [DOI] [PubMed] [Google Scholar]
  • 41.Moreno-Bruna, B., E. Baroja-Fernández, F. J. Muñoz, A. Bastarrica-Berasategui, A. Zandueta-Criado, M. Rodríguez-López, I. Lasa, T. Akazawa, and J. Pozueta-Romero. 2001. Adenosine diphosphate sugar pyrophosphatase prevents glycogen biosynthesis in Escherichia coli. Proc. Natl. Acad. Sci. USA 98:8128-8132. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 42.Newgard, C. B., P. K. Hwang, and R. J. Fletterick. 1989. The family of glycogen phosphorylases: structure and function. Crit. Rev. Biochem. Mol. Biol. 24:69-99. [DOI] [PubMed] [Google Scholar]
  • 43.Palmer, T. N., G. Wöber, and W. J. Whelan. 1973. The pathway of exogenous and endogenous carbohydrate utilization in Escherichia coli: a dual function for the enzymes of the maltose operon. Eur. J. Biochem. 39:601-612. [DOI] [PubMed] [Google Scholar]
  • 44.Preiss, J., and T. Romeo. 1994. Molecular biology and regulatory aspects of glycogen biosynthesis in bacteria. Prog. Nucleic Acids Res. Mol. Biol. 47:299-329. [DOI] [PubMed] [Google Scholar]
  • 45.Pulkownik, A., and G. J. Walker. 1976. Metabolism of the reserve polysaccharide of Streptococcus mitior (mitis): is there a second α-1,4-glucan phosphorylase? J. Bacteriol. 127:281-290. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 46.Romeo, T., A. Kumar, and J. Preiss. 1988. Analysis of the Escherichia coli glycogen gene cluster suggests that catabolic enzymes are encoded among the biosynthetic genes. Gene 70:363-376. [DOI] [PubMed] [Google Scholar]
  • 47.Romeo, T., and J. Preiss. 1989. Genetic regulation of glycogen biosynthesis in Escherichia coli: in vitro effects of cyclic AMP and guanosine 5′-diphosphate 3′-diphosphate and analysis of in vivo transcripts. J. Bacteriol. 171:2773-2782. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48.Romeo, T., M. Gong, M. Y. Liu, and A. M. Brun-Zinkernagel. 1993. Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties. J. Bacteriol. 175:4744-4755. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 49.Schinzell, R., and B. Nidetzky. 1999. Bacterial alpha-glucan phosphorylases FEMS Microbiol. Lett. 171:73-79. [DOI] [PubMed] [Google Scholar]
  • 50.Schupp, N., and P. Ziegler. 2004. The relation of starch phosphorylases to starch metabolism in wheat. Plant Cell Physiol. 45:1471-1484. [DOI] [PubMed] [Google Scholar]
  • 51.Seok, Y., M. Sondej, P. Badawi, M. S. Lewis, M. C. Briggs, H. Jaffe, and A. Peterkofsky. 1997. High affinity binding and allosteric regulation of Escherichia coli glycogen phosphorylase by the histidine phosphocarrier protein, Hpr. J. Biol. Chem. 272:26511-26521. [DOI] [PubMed] [Google Scholar]
  • 52.Sonnewald, U., A. Basner, B. Greve, and M. Steup. 1995. A second L-type isozyme of potato glucan phosphorylase: cloning, antisense inhibition and expression analysis. Plant Mol. Biol. 27:567-576. [DOI] [PubMed] [Google Scholar]
  • 53.Watson, K. A., R. Schinzel, D. Palm, and L. N. Johnson. 1997. The crystal structure of Escherichia coli maltodextrin phosphorylase provides an explanation for the activity without control in this basic archetype of a phosphorylase. EMBO J. 16:1-14. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 54.Yang, H., M. Y. Liu, and T. Romeo. 1996. Coordinate genetic regulation of glycogen catabolism and biosynthesis in Escherichia coli via the csrA gene product. J. Bacteriol. 178:1012-1017. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 55.Yu, F., Y. Jen, E. Takeuchi, M. Inouye, H. Nakayama, M. Tagawa, and T. Fukui. 1988. Alpha-glucan phosphorylase from Escherichia coli. Cloning of the gene, and purification and characterization of the protein. J. Biol. Chem. 263:13706-13711. [PubMed] [Google Scholar]
  • 56.Zeeman, S. C., D. Thorneycroft, N. Schupp, A. Chapple, M. Weck, H. Dunstan, P. Haldimann, N. Bechtold, A. M. Smith, and S. M. Smith. 2004. Plastidial alpha-glucan phosphorylase is not required for starch degradation in Arabidopsis leaves but has a role in the tolerance of abiotic stress. Plant Physiol. 135:849-858. [DOI] [PMC free article] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

[Supplemental material]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES