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. 1995 Oct;109(2):611–618. doi: 10.1104/pp.109.2.611

A rapeseed cold-inducible transcript encodes a phosphoenolpyruvate carboxykinase.

J Sáez-Vásquez 1, M Raynal 1, M Delseny 1
PMCID: PMC157627  PMID: 7480349

Abstract

We have isolated a clone corresponding to a new cold-regulated gene from a cDNA library made from rapeseed (Brassica napus cv Samourai) cold-acclimated etiolated seedlings. Sequence analysis and homology searches showed that this clone encodes a protein highly homologous to the ATP-dependent phosphoenolpyruvate carboxykinase (PEPCK; EC 4.1.1.49) from Saccharomyces cerevisiae, Trypanosoma, Rhizobium sp., and Escherichia coli; we refer to the B. napus clone as BnPEPCK. A potential ATP-binding site existing in all PEPCK proteins was also found in BnPEPCK. Although there was a basal expression of BnPEPCK in seedlings grown at control, room temperature, the steady-state level of the transcripts increased at 4 degrees C and decreased to normal levels when the seedlings were returned to control temperature (22 degrees C). Using antibodies made against a recombinant histidine-BnPEPCK fusion protein, we demonstrated that BnPEPCK protein level is correlated with the accumulation of the BnPEPCK transcript.

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Selected References

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  1. Aguan K., Sugawara K., Suzuki N., Kusano T. Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif. Mol Gen Genet. 1993 Jul;240(1):1–8. doi: 10.1007/BF00276876. [DOI] [PubMed] [Google Scholar]
  2. Christie P. J., Hahn M., Walbot V. Low-temperature accumulation of alcohol dehydrogenase-1 mRNA and protein activity in maize and rice seedlings. Plant Physiol. 1991 Mar;95(3):699–706. doi: 10.1104/pp.95.3.699. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Crespi M. D., Zabaleta E. J., Pontis H. G., Salerno G. L. Sucrose Synthase Expression during Cold Acclimation in Wheat. Plant Physiol. 1991 Jul;96(3):887–891. doi: 10.1104/pp.96.3.887. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Gilmour S. J., Artus N. N., Thomashow M. F. cDNA sequence analysis and expression of two cold-regulated genes of Arabidopsis thaliana. Plant Mol Biol. 1992 Jan;18(1):13–21. doi: 10.1007/BF00018452. [DOI] [PubMed] [Google Scholar]
  5. Higgins C. F., Gallagher M. P., Mimmack M. L., Pearce S. R. A family of closely related ATP-binding subunits from prokaryotic and eukaryotic cells. Bioessays. 1988 Apr;8(4):111–116. doi: 10.1002/bies.950080406. [DOI] [PubMed] [Google Scholar]
  6. Higgins D. G. CLUSTAL V: multiple alignment of DNA and protein sequences. Methods Mol Biol. 1994;25:307–318. doi: 10.1385/0-89603-276-0:307. [DOI] [PubMed] [Google Scholar]
  7. Höfte H., Desprez T., Amselem J., Chiapello H., Rouzé P., Caboche M., Moisan A., Jourjon M. F., Charpenteau J. L., Berthomieu P. An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant J. 1993 Dec;4(6):1051–1061. doi: 10.1046/j.1365-313x.1993.04061051.x. [DOI] [PubMed] [Google Scholar]
  8. Jarillo J. A., Leyva A., Salinas J., Martinez-Zapater J. M. Low Temperature Induces the Accumulation of Alcohol Dehydrogenase mRNA in Arabidopsis thaliana, a Chilling-Tolerant Plant. Plant Physiol. 1993 Mar;101(3):833–837. doi: 10.1104/pp.101.3.833. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Kurkela S., Borg-Franck M. Structure and expression of kin2, one of two cold- and ABA-induced genes of Arabidopsis thaliana. Plant Mol Biol. 1992 Jul;19(4):689–692. doi: 10.1007/BF00026794. [DOI] [PubMed] [Google Scholar]
  10. Lee S. P., Chen T. H. Molecular cloning of abscisic acid-responsive mRNAs expressed during the induction of freezing tolerance in bromegrass (Bromus inermis Leyss) suspension culture. Plant Physiol. 1993 Mar;101(3):1089–1096. doi: 10.1104/pp.101.3.1089. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Liljeström P., Laamanen I., Palva E. T. Structure and expression of the ompB operon, the regulatory locus for the outer membrane porin regulon in Salmonella typhimurium LT-2. J Mol Biol. 1988 Jun 20;201(4):663–673. doi: 10.1016/0022-2836(88)90465-2. [DOI] [PubMed] [Google Scholar]
  12. Lin C., Thomashow M. F. DNA Sequence Analysis of a Complementary DNA for Cold-Regulated Arabidopsis Gene cor15 and Characterization of the COR 15 Polypeptide. Plant Physiol. 1992 Jun;99(2):519–525. doi: 10.1104/pp.99.2.519. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Linss J., Goldenberg S., Urbina J. A., Amzel L. M. Cloning and characterization of the gene encoding ATP-dependent phospho-enol-pyruvate carboxykinase in Trypanosoma cruzi: comparison of primary and predicted secondary structure with host GTP-dependent enzyme. Gene. 1993 Dec 22;136(1-2):69–77. doi: 10.1016/0378-1119(93)90449-d. [DOI] [PubMed] [Google Scholar]
  14. Meza-Basso L., Alberdi M., Raynal M., Ferrero-Cadinanos M. L., Delseny M. Changes in Protein Synthesis in Rapeseed (Brassica napus) Seedlings during a Low Temperature Treatment. Plant Physiol. 1986 Nov;82(3):733–738. doi: 10.1104/pp.82.3.733. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Parcy F., Valon C., Raynal M., Gaubier-Comella P., Delseny M., Giraudat J. Regulation of gene expression programs during Arabidopsis seed development: roles of the ABI3 locus and of endogenous abscisic acid. Plant Cell. 1994 Nov;6(11):1567–1582. doi: 10.1105/tpc.6.11.1567. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Parsons M., Smith J. M. Trypanosome glycosomal protein P60 is homologous to phosphoenolpyruvate carboxykinase (ATP). Nucleic Acids Res. 1989 Aug 11;17(15):6411–6411. doi: 10.1093/nar/17.15.6411. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Pearson W. R. Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol. 1990;183:63–98. doi: 10.1016/0076-6879(90)83007-v. [DOI] [PubMed] [Google Scholar]
  18. Stucka R., Valdés-Hevia M. D., Gancedo C., Schwarzlose C., Feldmann H. Nucleotide sequence of the phosphoenolpyruvate carboxykinase gene from Saccharomyces cerevisiae. Nucleic Acids Res. 1988 Nov 25;16(22):10926–10926. doi: 10.1093/nar/16.22.10926. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Sáez-Vásquez J., Raynal M., Meza-Basso L., Delseny M. Two related, low-temperature-induced genes from Brassica napus are homologous to the human tumour bbc1 (breast basic conserved) gene. Plant Mol Biol. 1993 Dec;23(6):1211–1221. doi: 10.1007/BF00042354. [DOI] [PubMed] [Google Scholar]
  20. Weretilnyk E., Orr W., White T. C., Iu B., Singh J. Characterization of three related low-temperature-regulated cDNAs from winter Brassica napus. Plant Physiol. 1993 Jan;101(1):171–177. doi: 10.1104/pp.101.1.171. [DOI] [PMC free article] [PubMed] [Google Scholar]

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