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. 1996 Sep;112(1):43–51. doi: 10.1104/pp.112.1.43

Identification of an Arabidopsis thaliana ribulose-1,5-bisphosphate carboxylase/oxygenase activase (RCA) minimal promoter regulated by light and the circadian clock.

Z Liu 1, C C Taub 1, C R McClung 1
PMCID: PMC157921  PMID: 8819320

Abstract

Transcription of the Arabidopsis thaliana gene encoding ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) activase (RCA) is organ-specific, light-responsive, and regulated by the circadian clock. RCA is transcribed throughout the green parts of the plant, but not in roots and petals. Responses elicited by short pulses of light indicate that the light response is mediated, at least in part, by phytochrome. Analysis of transgenic tobacco and Arabidopsis carrying RCA 5' untranscribed regions fused to reporter genes (uidA, encoding beta-glucuronidase, or cat, encoding chloramphenicol acetyltransferase) indicate that elements sufficient to confer organ-specific, light-responsive, and clock-regulated transcription are localized within 317 base pairs upstream of the site of transcription initiation. A clock-responsive element sufficient to confer a low-amplitude (approximately 2-fold) circadian oscillation lies within 317 base pairs of the trascription start, but other elements necessary for high-amplitude (approximately 10-fold) circadian oscillation lie upstream of -317 and are removed by deletion from -970 to -317.

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Selected References

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  1. Anderson S. L., Kay S. A. Functional dissection of circadian clock- and phytochrome-regulated transcription of the Arabidopsis CAB2 gene. Proc Natl Acad Sci U S A. 1995 Feb 28;92(5):1500–1504. doi: 10.1073/pnas.92.5.1500. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Anderson S. L., Teakle G. R., Martino-Catt S. J., Kay S. A. Circadian clock- and phytochrome-regulated transcription is conferred by a 78 bp cis-acting domain of the Arabidopsis CAB2 promoter. Plant J. 1994 Oct;6(4):457–470. doi: 10.1046/j.1365-313x.1994.6040457.x. [DOI] [PubMed] [Google Scholar]
  3. Bent A. F., Kunkel B. N., Dahlbeck D., Brown K. L., Schmidt R., Giraudat J., Leung J., Staskawicz B. J. RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science. 1994 Sep 23;265(5180):1856–1860. doi: 10.1126/science.8091210. [DOI] [PubMed] [Google Scholar]
  4. Bevan M. Binary Agrobacterium vectors for plant transformation. Nucleic Acids Res. 1984 Nov 26;12(22):8711–8721. doi: 10.1093/nar/12.22.8711. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Borello U., Ceccarelli E., Giuliano G. Constitutive, light-responsive and circadian clock-responsive factors compete for the different l box elements in plant light-regulated promoters. Plant J. 1993 Oct;4(4):611–619. doi: 10.1046/j.1365-313x.1993.04040611.x. [DOI] [PubMed] [Google Scholar]
  6. Carre I. A., Kay S. A. Multiple DNA-Protein Complexes at a Circadian-Regulated Promoter Element. Plant Cell. 1995 Dec;7(12):2039–2051. doi: 10.1105/tpc.7.12.2039. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Degenhardt J., Tobin E. M. A DNA binding activity for one of two closely defined phytochrome regulatory elements in an Lhcb promoter is more abundant in etiolated than in green plants. Plant Cell. 1996 Jan;8(1):31–41. doi: 10.1105/tpc.8.1.31. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Fejes E., Pay A., Kanevsky I., Szell M., Adam E., Kay S., Nagy F. A 268 bp upstream sequence mediates the circadian clock-regulated transcription of the wheat Cab-1 gene in transgenic plants. Plant Mol Biol. 1990 Dec;15(6):921–932. doi: 10.1007/BF00039431. [DOI] [PubMed] [Google Scholar]
  9. Gilmartin P. M., Sarokin L., Memelink J., Chua N. H. Molecular light switches for plant genes. Plant Cell. 1990 May;2(5):369–378. doi: 10.1105/tpc.2.5.369. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Jefferson R. A., Kavanagh T. A., Bevan M. W. GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 1987 Dec 20;6(13):3901–3907. doi: 10.1002/j.1460-2075.1987.tb02730.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Kehoe D. M., Degenhardt J., Winicov I., Tobin E. M. Two 10-bp regions are critical for phytochrome regulation of a Lemna gibba Lhcb gene promoter. Plant Cell. 1994 Aug;6(8):1123–1134. doi: 10.1105/tpc.6.8.1123. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Lam E., Chua N. H. ASF-2: a factor that binds to the cauliflower mosaic virus 35S promoter and a conserved GATA motif in Cab promoters. Plant Cell. 1989 Dec;1(12):1147–1156. doi: 10.1105/tpc.1.12.1147. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Liu Z. R., Sanford J. C. Investigation of the mechanism underlying the inhibitory effect of heterologous ras genes in plant cells. Plant Mol Biol. 1993 Aug;22(5):751–765. doi: 10.1007/BF00027362. [DOI] [PubMed] [Google Scholar]
  14. Martino-Catt S., Ort D. R. Low temperature interrupts circadian regulation of transcriptional activity in chilling-sensitive plants. Proc Natl Acad Sci U S A. 1992 May 1;89(9):3731–3735. doi: 10.1073/pnas.89.9.3731. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Millar A. J., McGrath R. B., Chua N. H. Phytochrome phototransduction pathways. Annu Rev Genet. 1994;28:325–349. doi: 10.1146/annurev.ge.28.120194.001545. [DOI] [PubMed] [Google Scholar]
  16. Millar A. J., Short S. R., Chua N. H., Kay S. A. A novel circadian phenotype based on firefly luciferase expression in transgenic plants. Plant Cell. 1992 Sep;4(9):1075–1087. doi: 10.1105/tpc.4.9.1075. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Miziorko H. M., Lorimer G. H. Ribulose-1,5-bisphosphate carboxylase-oxygenase. Annu Rev Biochem. 1983;52:507–535. doi: 10.1146/annurev.bi.52.070183.002451. [DOI] [PubMed] [Google Scholar]
  18. Orozco B. M., McClung C. R., Werneke J. M., Ogren W. L. Molecular basis of the ribulose-1,5-bisphosphate carboxylase/oxygenase activase mutation in Arabidopsis thaliana is a guanine-to-adenine transition at the 5'-splice junction of intron 3. Plant Physiol. 1993 May;102(1):227–232. doi: 10.1104/pp.102.1.227. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Orozco B. M., Ogren W. L. Localization of light-inducible and tissue-specific regions of the spinach ribulose bisphosphate carboxylase/oxygenase (rubisco) activase promoter in transgenic tobacco plants. Plant Mol Biol. 1993 Dec;23(6):1129–1138. doi: 10.1007/BF00042347. [DOI] [PubMed] [Google Scholar]
  20. Piechulla B. 'Circadian clock' directs the expression of plant genes. Plant Mol Biol. 1993 Jun;22(3):533–542. doi: 10.1007/BF00015982. [DOI] [PubMed] [Google Scholar]
  21. Pilgrim M. L., McClung C. R. Differential Involvement of the Circadian Clock in the Expression of Genes Required for Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Synthesis, Assembly, and Activation in Arabidopsis thaliana. Plant Physiol. 1993 Oct;103(2):553–564. doi: 10.1104/pp.103.2.553. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Rundle S. J., Zielinski R. E. Alterations in barley ribulose-1,5-bisphosphate carboxylase/oxygenase activase gene expression during development and in response to illumination. J Biol Chem. 1991 Aug 5;266(22):14802–14807. [PubMed] [Google Scholar]
  23. Schindler U., Cashmore A. R. Photoregulated gene expression may involve ubiquitous DNA binding proteins. EMBO J. 1990 Nov;9(11):3415–3427. doi: 10.1002/j.1460-2075.1990.tb07549.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Somerville C. R., Portis A. R., Ogren W. L. A Mutant of Arabidopsis thaliana Which Lacks Activation of RuBP Carboxylase In Vivo. Plant Physiol. 1982 Aug;70(2):381–387. doi: 10.1104/pp.70.2.381. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Sun L., Doxsee R. A., Harel E., Tobin E. M. CA-1, a novel phosphoprotein, interacts with the promoter of the cab140 gene in Arabidopsis and is undetectable in det1 mutant seedlings. Plant Cell. 1993 Jan;5(1):109–121. doi: 10.1105/tpc.5.1.109. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Watillon B., Kettmann R., Boxus P., Burny A. Developmental and circadian pattern of rubisco activase mRNA accumulation in apple plants. Plant Mol Biol. 1993 Nov;23(3):501–509. doi: 10.1007/BF00019298. [DOI] [PubMed] [Google Scholar]
  27. Werneke J. M., Ogren W. L. Structure of an Arabidopsis thaliana cDNA encoding rubisco activase. Nucleic Acids Res. 1989 Apr 11;17(7):2871–2871. doi: 10.1093/nar/17.7.2871. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Zielinski R. E., Werneke J. M., Jenkins M. E. Coordinate Expression of Rubisco Activase and Rubisco during Barley Leaf Cell Development. Plant Physiol. 1989 Jun;90(2):516–521. doi: 10.1104/pp.90.2.516. [DOI] [PMC free article] [PubMed] [Google Scholar]

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