Table 2.
Pattern of substitutions
|
Pattern of gaps in numt |
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Size (bp) | Changes between cymt and numt (bp)
|
Ts
|
Tv
|
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Segments | cymt | numt | Subst. | Gaps | A-G | T-C | G-C | A-T | T-G | A-C | Ts/Tv ratio | Insertions (bp) | (bp) Deletions | Number of stop codons within numt | Percent differences of nucleotide |
Protein Coding Genes | |||||||||||||||
ND5 | 1530 | 1533 | 124 | 11 | 35 | 76 | 4 | 3 | 1 | 5 | 8,5 | 7(1bpx3+2bpx2) | 4(1bpx4) | 1 | 8,8 |
ND6 | 528 | 527 | 38 | 5 | 14 | 19 | - | 1 | 3 | 1 | 6,6 | 2(1bpx2) | 3(1bpx1+2bpx1) | - | 8,1 |
ND1 | 957 | 958 | 71 | 5 | 15 | 52 | 1 | 1 | 1 | 1 | 16,8 | 3(1bpx4) | 2(1bpx2) | 3 | 7,0 |
ND2 | 1044 | 1044 | 84 | 4 | 26 | 46 | 4 | 4 | - | 4 | 6,0 | 2(1bpx2) | 2(1bpx2) | - | 8,4 |
CytB | 1140 | 1143 | 94 | 15 | 29 | 59 | 1 | 2 | 1 | 2 | 14,7 | 9(1bpx9) | 6(1bpx6) | - | 10,5 |
COI | 1545 | 1550 | 124 | 19 | 48 | 65 | 1 | 2 | 6 | 2 | 10,3 | 12(1bpx9+3bpx1) | 7(1bpx7) | 23 | 9,3 |
COII | 684 | 684 | 62 | 8 | 27 | 33 | - | - | 1 | 1 | 30,0 | 4(1bpx2+2bpx1) | 4(1bpx4) | - | 10,2 |
ATP8 | 182 | 183 | 23 | 9 | 10 | 9 | 1 | 2 | 1 | 1 | 3,8 | 5(1bpx3+2bpx1) | 4(1bpx2+2bpx1) | 5 | 17,6 |
Total | 7610 | 7622 | 620 | 76 | 204 | 359 | 12 | 15 | 14 | 17 | 9,7 | 44 | 32 | 32 | 9,1 |
rRNAs | |||||||||||||||
12S | 957 | 956 | 19 | 9 | 7 | 9 | - | - | - | 3 | 5,3 | 4(1bpx4) | 5(1bpx5) | - | 2,9 |
16S | 1575 | 1545 | 42 | 44 | 13 | 22 | 1 | 4 | - | 1 | 5,8 | 7(1bpx7) | 37(6bpx1+1bpx6+25bpx1) | - | 5,5 |
Total | 2532 | 2501 | 61 | 53 | 20 | 31 | 1 | 4 | - | 4 | 5,7 | 11 | 42 | - | 4,5 |
tRNAs | |||||||||||||||
tRNA-Glu | 71 | 70 | - | 1 | - | - | - | - | - | - | - | - | 1(1bpx1) | - | 1,4 |
tRNA-Thr | 70 | 70 | 4 | - | 1 | 2 | - | 1 | - | - | 3 | - | - | - | 5,7 |
tRNA-Pro | 66 | 66 | - | - | - | - | - | - | - | - | - | - | - | - | 0 |
tRNA-Phe | 71 | 75 | 6 | 6 | 3 | 1 | 1 | - | 1 | - | 2 | 5(2bpx1+1bpx3) | 1(1bpx1) | - | 16,9 |
tRNA-Val | 68 | 68 | - | - | - | - | - | - | - | - | - | - | - | 0 | |
tRNA-Leu | 75 | 75 | 4 | - | - | 2 | - | 1 | 1 | - | 1 | - | - | - | 5,3 |
tRNA-Ile | 69 | 69 | 2 | - | 2 | - | - | - | - | - | 2 | - | - | - | 2,9 |
tRNA-Gln | 74 | 74 | - | - | - | - | - | - | - | - | - | - | - | - | 0 |
tRNA-Met | 69 | 69 | 1 | - | - | 1 | - | - | - | - | 1 | - | - | - | 1,4 |
tRNA-Trp | 69 | 69 | 3 | 4 | - | 1 | - | 1 | 1 | - | 0,5 | 2(1bpx2) | 2(1bpx2) | - | 10,1 |
tRNA-Ala | 69 | 69 | 3 | - | 1 | 2 | - | - | - | - | 3 | - | - | - | 4,3 |
tRNA-Asn | 73 | 73 | 3 | - | 1 | 1 | - | - | 1 | - | 2 | - | - | - | 4,1 |
tRNA-Cys | 66 | 66 | 2 | - | 1 | - | - | 1 | - | - | 1 | - | - | - | 3,0 |
tRNA-Tyr | 68 | 66 | 4 | 4 | - | 2 | 1 | - | - | 1 | 1 | 1(1bpx1) | 3(1bpx3) | - | 11,8 |
tRNA-Ser | 70 | 70 | 3 | - | 1 | 2 | - | - | - | - | 3 | - | - | - | 4,3 |
tRNA-Asp | 69 | 70 | 4 | 1 | 2 | 2 | - | - | - | - | 4 | 1(1bpx1) | - | - | 7,2 |
tRNA-Lys | 69 | 69 | 4 | - | 1 | 3 | - | - | - | - | 4 | - | - | - | 5,8 |
Total | 1186 | 1188 | 43 | 16 | 13 | 19 | 2 | 4 | 4 | 1 | 2,9 | 9 | 7 | - | 5,0 |
Control region | 1539 | 1181 | 79 | 378 | 25 | 39 | 2 | 6 | 2 | 5 | 4,3 | 10(1bpx7+3bpx1) | 368(1bpx5+23bpx1+340bpx1) | - | 30 |
Total | 12867 | 12492 | 803 | 523 | 262 | 448 | 17 | 29 | 20 | 27 | 7,6 | 74 | 449 | 32 | 10,3 |