Abstract
We have identified and partially purified a DNA binding protein from Arabidopsis that interacts specifically with the phytochrome-responsive promoter of the Arabidopsis cab140 gene. Promoter deletion analyses in transgenic tobacco showed that, if a region that includes the sequence interacting with this protein was deleted, both expression and phytochrome responsiveness were lost. The protein protected a cytosine- and adenine-rich region from DNase I digestion, and therefore it has been called Ca-1. CA-1 was shown to be a phosphoprotein, and dephosphorylation changed the migration of the protein-DNA complex in DNA mobility shift assays. The data suggested that the protein has an apparent molecular weight of 70,000. The CA-1-protected region of the cab140 promoter included an ACGT motif that has been found in the target sequences of a number of bZIP transcription factors, but the binding behavior of CA-1 differed from those factors. CA-1 binding activity was present in plants grown in either white light or darkness, and no differences in the binding activity were detected in the dark-grown plants after short red or white light treatments. However, the CA-1 binding activity was not detectable in extracts of seedlings bearing the det1 mutation grown in the dark and given the same illumination treatments as wild type. In contrast to wild type, the mutant seedlings express cab RNA at a high level when grown in complete darkness, and we found no further increase in cab140 mRNA in response to brief red illumination. The lack of CA-1 activity in the det1 mutant suggests that it may function as a transcriptional repressor regulating the expression of the cab140 gene in Arabidopsis.
Full Text
The Full Text of this article is available as a PDF (3.8 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Argüello G., García-Hernández E., Sánchez M., Gariglio P., Herrera-Estrella L., Simpson J. Characterization of DNA sequences that mediate nuclear protein binding to the regulatory region of the Pisum sativum (pea) chlorophyl a/b binding protein gene AB80: identification of a repeated heptamer motif. Plant J. 1992 May;2(3):301–309. doi: 10.1046/j.1365-313x.1992.t01-30-00999.x. [DOI] [PubMed] [Google Scholar]
- Bruce W. B., Christensen A. H., Klein T., Fromm M., Quail P. H. Photoregulation of a phytochrome gene promoter from oat transferred into rice by particle bombardment. Proc Natl Acad Sci U S A. 1989 Dec;86(24):9692–9696. doi: 10.1073/pnas.86.24.9692. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bruce W. B., Deng X. W., Quail P. H. A negatively acting DNA sequence element mediates phytochrome-directed repression of phyA gene transcription. EMBO J. 1991 Oct;10(10):3015–3024. doi: 10.1002/j.1460-2075.1991.tb07852.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brusslan J. A., Tobin E. M. Light-independent developmental regulation of cab gene expression in Arabidopsis thaliana seedlings. Proc Natl Acad Sci U S A. 1992 Aug 15;89(16):7791–7795. doi: 10.1073/pnas.89.16.7791. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buzby J. S., Yamada T., Tobin E. M. A light-regulated DNA-binding activity interacts with a conserved region of a Lemna gibba rbcS promoter. Plant Cell. 1990 Aug;2(8):805–814. doi: 10.1105/tpc.2.8.805. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chory J. Light signals in leaf and chloroplast development: photoreceptors and downstream responses in search of a transduction pathway. New Biol. 1991 Jun;3(6):538–548. [PubMed] [Google Scholar]
- Chory J., Peto C., Feinbaum R., Pratt L., Ausubel F. Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. Cell. 1989 Sep 8;58(5):991–999. doi: 10.1016/0092-8674(89)90950-1. [DOI] [PubMed] [Google Scholar]
- Deng X. W., Caspar T., Quail P. H. cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis. Genes Dev. 1991 Jul;5(7):1172–1182. doi: 10.1101/gad.5.7.1172. [DOI] [PubMed] [Google Scholar]
- Donald R. G., Cashmore A. R. Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter. EMBO J. 1990 Jun;9(6):1717–1726. doi: 10.1002/j.1460-2075.1990.tb08295.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Donald R. G., Schindler U., Batschauer A., Cashmore A. R. The plant G box promoter sequence activates transcription in Saccharomyces cerevisiae and is bound in vitro by a yeast activity similar to GBF, the plant G box binding factor. EMBO J. 1990 Jun;9(6):1727–1735. doi: 10.1002/j.1460-2075.1990.tb08296.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ellis J. G., Llewellyn D. J., Walker J. C., Dennis E. S., Peacock W. J. The ocs element: a 16 base pair palindrome essential for activity of the octopine synthase enhancer. EMBO J. 1987 Nov;6(11):3203–3208. doi: 10.1002/j.1460-2075.1987.tb02636.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gilmartin P. M., Memelink J., Hiratsuka K., Kay S. A., Chua N. H. Characterization of a gene encoding a DNA binding protein with specificity for a light-responsive element. Plant Cell. 1992 Jul;4(7):839–849. doi: 10.1105/tpc.4.7.839. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gilmartin P. M., Sarokin L., Memelink J., Chua N. H. Molecular light switches for plant genes. Plant Cell. 1990 May;2(5):369–378. doi: 10.1105/tpc.2.5.369. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Giuliano G., Pichersky E., Malik V. S., Timko M. P., Scolnik P. A., Cashmore A. R. An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene. Proc Natl Acad Sci U S A. 1988 Oct;85(19):7089–7093. doi: 10.1073/pnas.85.19.7089. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Green P. J., Kay S. A., Chua N. H. Sequence-specific interactions of a pea nuclear factor with light-responsive elements upstream of the rbcS-3A gene. EMBO J. 1987 Sep;6(9):2543–2549. doi: 10.1002/j.1460-2075.1987.tb02542.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Guiltinan M. J., Marcotte W. R., Jr, Quatrano R. S. A plant leucine zipper protein that recognizes an abscisic acid response element. Science. 1990 Oct 12;250(4978):267–271. doi: 10.1126/science.2145628. [DOI] [PubMed] [Google Scholar]
- Ha S. B., An G. Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene. Proc Natl Acad Sci U S A. 1988 Nov;85(21):8017–8021. doi: 10.1073/pnas.85.21.8017. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Karlin-Neumann G. A., Kohorn B. D., Thornber J. P., Tobin E. M. A chlorophyll a/b-protein encoded by a gene containing an intron with characteristics of a transposable element. J Mol Appl Genet. 1985;3(1):45–61. [PubMed] [Google Scholar]
- Karlin-Neumann G. A., Sun L., Tobin E. M. Expression of Light-Harvesting Chlorophyll a/b-Protein Genes Is Phytochrome-Regulated in Etiolated Arabidopsis thaliana Seedlings. Plant Physiol. 1988 Dec;88(4):1323–1331. doi: 10.1104/pp.88.4.1323. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Katagiri F., Chua N. H. Plant transcription factors: present knowledge and future challenges. Trends Genet. 1992 Jan;8(1):22–27. doi: 10.1016/0168-9525(92)90020-5. [DOI] [PubMed] [Google Scholar]
- Lam E., Benfey P. N., Gilmartin P. M., Fang R. X., Chua N. H. Site-specific mutations alter in vitro factor binding and change promoter expression pattern in transgenic plants. Proc Natl Acad Sci U S A. 1989 Oct;86(20):7890–7894. doi: 10.1073/pnas.86.20.7890. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lam E., Chua N. H. GT-1 binding site confers light responsive expression in transgenic tobacco. Science. 1990 Apr 27;248(4954):471–474. doi: 10.1126/science.2330508. [DOI] [PubMed] [Google Scholar]
- Luan S., Bogorad L. A rice cab gene promoter contains separate cis-acting elements that regulate expression in dicot and monocot plants. Plant Cell. 1992 Aug;4(8):971–981. doi: 10.1105/tpc.4.8.971. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Oeda K., Salinas J., Chua N. H. A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes. EMBO J. 1991 Jul;10(7):1793–1802. doi: 10.1002/j.1460-2075.1991.tb07704.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Perisic O., Lam E. A tobacco DNA binding protein that interacts with a light-responsive box II element. Plant Cell. 1992 Jul;4(7):831–838. doi: 10.1105/tpc.4.7.831. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sarokin L. P., Chua N. H. Binding sites for two novel phosphoproteins, 3AF5 and 3AF3, are required for rbcS-3A expression. Plant Cell. 1992 Apr;4(4):473–483. doi: 10.1105/tpc.4.4.473. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schindler U., Menkens A. E., Beckmann H., Ecker J. R., Cashmore A. R. Heterodimerization between light-regulated and ubiquitously expressed Arabidopsis GBF bZIP proteins. EMBO J. 1992 Apr;11(4):1261–1273. doi: 10.1002/j.1460-2075.1992.tb05170.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Singh K., Dennis E. S., Ellis J. G., Llewellyn D. J., Tokuhisa J. G., Wahleithner J. A., Peacock W. J. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell. 1990 Sep;2(9):891–903. doi: 10.1105/tpc.2.9.891. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Williams M. E., Foster R., Chua N. H. Sequences flanking the hexameric G-box core CACGTG affect the specificity of protein binding. Plant Cell. 1992 Apr;4(4):485–496. doi: 10.1105/tpc.4.4.485. [DOI] [PMC free article] [PubMed] [Google Scholar]