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. 1994 Aug;6(8):1157–1170. doi: 10.1105/tpc.6.8.1157

A DNA sequence required for geminivirus replication also mediates transcriptional regulation.

P A Eagle 1, B M Orozco 1, L Hanley-Bowdoin 1
PMCID: PMC160509  PMID: 7919985

Abstract

Tomato golden mosaic virus (TGMV), a member of the geminivirus family, requires a single virus-encoded protein for DNA replication. We show that the TGMV replication protein, AL1, also acts during transcription to specifically repress the activity of its promoter. An earlier study established that AL1 binds to a 13-bp sequence (5'-GGTAGTAAGGTAG) that is essential for activity of the TGMV replication origin. Analysis of AL1 binding site mutants in transient expression assays demonstrated that the same site, which is located between the transcription start site and TATA box in the AL1 promoter, also mediates transcriptional repression. These experiments revealed that the repeated motifs in the AL1 binding site contribute differentially to repression, as has been observed previously for AL1-DNA binding and viral replication. Introduction of the AL1 binding site into the 35S promoter of the cauliflower mosaic virus was sufficient to confer AL1-mediated repression to the heterologous promoter. Analysis of a truncated AL1 promoter and of mutant AL1 proteins showed that repression does not require a replication-competent template or a replication-competent AL1 protein. Transient expression studies using two different Nicotiana cell lines revealed that, although the two lines replicate plasmids containing the TGMV origin similarly, they support very different levels of AL1-mediated repression. These results suggest that geminivirus transcriptional repression and replication may be independent processes.

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Selected References

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  1. Accotto G. P., Donson J., Mullineaux P. M. Mapping of Digitaria streak virus transcripts reveals different RNA species from the same transcription unit. EMBO J. 1989 Apr;8(4):1033–1039. doi: 10.1002/j.1460-2075.1989.tb03470.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Baniahmad A., Ha I., Reinberg D., Tsai S., Tsai M. J., O'Malley B. W. Interaction of human thyroid hormone receptor beta with transcription factor TFIIB may mediate target gene derepression and activation by thyroid hormone. Proc Natl Acad Sci U S A. 1993 Oct 1;90(19):8832–8836. doi: 10.1073/pnas.90.19.8832. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bell S. P., Kobayashi R., Stillman B. Yeast origin recognition complex functions in transcription silencing and DNA replication. Science. 1993 Dec 17;262(5141):1844–1849. doi: 10.1126/science.8266072. [DOI] [PubMed] [Google Scholar]
  4. Bell S. P., Stillman B. ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature. 1992 May 14;357(6374):128–134. doi: 10.1038/357128a0. [DOI] [PubMed] [Google Scholar]
  5. DePamphilis M. L. Transcriptional elements as components of eukaryotic origins of DNA replication. Cell. 1988 Mar 11;52(5):635–638. doi: 10.1016/0092-8674(88)90398-4. [DOI] [PubMed] [Google Scholar]
  6. Dekker E. L., Woolston C. J., Xue Y. B., Cox B., Mullineaux P. M. Transcript mapping reveals different expression strategies for the bicistronic RNAs of the geminivirus wheat dwarf virus. Nucleic Acids Res. 1991 Aug 11;19(15):4075–4081. doi: 10.1093/nar/19.15.4075. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Dong G., Broker T. R., Chow L. T. Human papillomavirus type 11 E2 proteins repress the homologous E6 promoter by interfering with the binding of host transcription factors to adjacent elements. J Virol. 1994 Feb;68(2):1115–1127. doi: 10.1128/jvi.68.2.1115-1127.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Dostatni N., Lambert P. F., Sousa R., Ham J., Howley P. M., Yaniv M. The functional BPV-1 E2 trans-activating protein can act as a repressor by preventing formation of the initiation complex. Genes Dev. 1991 Sep;5(9):1657–1671. doi: 10.1101/gad.5.9.1657. [DOI] [PubMed] [Google Scholar]
  9. Elmer J. S., Brand L., Sunter G., Gardiner W. E., Bisaro D. M., Rogers S. G. Genetic analysis of the tomato golden mosaic virus. II. The product of the AL1 coding sequence is required for replication. Nucleic Acids Res. 1988 Jul 25;16(14B):7043–7060. doi: 10.1093/nar/16.14.7043. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Etessami P., Saunders K., Watts J., Stanley J. Mutational analysis of complementary-sense genes of African cassava mosaic virus DNA A. J Gen Virol. 1991 May;72(Pt 5):1005–1012. doi: 10.1099/0022-1317-72-5-1005. [DOI] [PubMed] [Google Scholar]
  11. Fanning E., Knippers R. Structure and function of simian virus 40 large tumor antigen. Annu Rev Biochem. 1992;61:55–85. doi: 10.1146/annurev.bi.61.070192.000415. [DOI] [PubMed] [Google Scholar]
  12. Fontes E. P., Gladfelter H. J., Schaffer R. L., Petty I. T., Hanley-Bowdoin L. Geminivirus replication origins have a modular organization. Plant Cell. 1994 Mar;6(3):405–416. doi: 10.1105/tpc.6.3.405. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Fontes E. P., Luckow V. A., Hanley-Bowdoin L. A geminivirus replication protein is a sequence-specific DNA binding protein. Plant Cell. 1992 May;4(5):597–608. doi: 10.1105/tpc.4.5.597. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Fried M., Crothers D. M. Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucleic Acids Res. 1981 Dec 11;9(23):6505–6525. doi: 10.1093/nar/9.23.6505. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Frischmuth S., Frischmuth T., Jeske H. Transcript mapping of Abutilon mosaic virus, a geminivirus. Virology. 1991 Dec;185(2):596–604. doi: 10.1016/0042-6822(91)90530-o. [DOI] [PubMed] [Google Scholar]
  16. Gröning B. R., Hayes R. J., Buck K. W. Simultaneous regulation of tomato golden mosaic virus coat protein and AL1 gene expression: expression of the AL4 gene may contribute to suppression of the AL1 gene. J Gen Virol. 1994 Apr;75(Pt 4):721–726. doi: 10.1099/0022-1317-75-4-721. [DOI] [PubMed] [Google Scholar]
  17. Haley A., Zhan X., Richardson K., Head K., Morris B. Regulation of the activities of African cassava mosaic virus promoters by the AC1, AC2, and AC3 gene products. Virology. 1992 Jun;188(2):905–909. doi: 10.1016/0042-6822(92)90551-y. [DOI] [PubMed] [Google Scholar]
  18. Hamilton W. D., Stein V. E., Coutts R. H., Buck K. W. Complete nucleotide sequence of the infectious cloned DNA components of tomato golden mosaic virus: potential coding regions and regulatory sequences. EMBO J. 1984 Sep;3(9):2197–2205. doi: 10.1002/j.1460-2075.1984.tb02114.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Hanley-Bowdoin L., Elmer J. S., Rogers S. G. Functional expression of the leftward open reading frames of the A component of tomato golden mosaic virus in transgenic tobacco plants. Plant Cell. 1989 Nov;1(11):1057–1067. doi: 10.1105/tpc.1.11.1057. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Hayes R. J., Buck K. W. Replication of tomato golden mosaic virus DNA B in transgenic plants expressing open reading frames (ORFs) of DNA A: requirement of ORF AL2 for production of single-stranded DNA. Nucleic Acids Res. 1989 Dec 25;17(24):10213–10222. doi: 10.1093/nar/17.24.10213. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Herschbach B. M., Johnson A. D. Transcriptional repression in eukaryotes. Annu Rev Cell Biol. 1993;9:479–509. doi: 10.1146/annurev.cb.09.110193.002403. [DOI] [PubMed] [Google Scholar]
  22. Hofer J. M., Dekker E. L., Reynolds H. V., Woolston C. J., Cox B. S., Mullineaux P. M. Coordinate regulation of replication and virion sense gene expression in wheat dwarf virus. Plant Cell. 1992 Feb;4(2):213–223. doi: 10.1105/tpc.4.2.213. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Horikoshi N., Maguire K., Kralli A., Maldonado E., Reinberg D., Weinmann R. Direct interaction between adenovirus E1A protein and the TATA box binding transcription factor IID. Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5124–5128. doi: 10.1073/pnas.88.12.5124. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Ilyina T. V., Koonin E. V. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 1992 Jul 11;20(13):3279–3285. doi: 10.1093/nar/20.13.3279. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Junghans H., Metzlaff M. A simple and rapid method for the preparation of total plant DNA. Biotechniques. 1990 Feb;8(2):176–176. [PubMed] [Google Scholar]
  26. Jupp R., Hoffmann S., Depto A., Stenberg R. M., Ghazal P., Nelson J. A. Direct interaction of the human cytomegalovirus IE86 protein with the cis repression signal does not preclude TBP from binding to the TATA box. J Virol. 1993 Sep;67(9):5595–5604. doi: 10.1128/jvi.67.9.5595-5604.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Kay R., Chan A., Daly M., McPherson J. Duplication of CaMV 35S Promoter Sequences Creates a Strong Enhancer for Plant Genes. Science. 1987 Jun 5;236(4806):1299–1302. doi: 10.1126/science.236.4806.1299. [DOI] [PubMed] [Google Scholar]
  28. Kunkel T. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc Natl Acad Sci U S A. 1985 Jan;82(2):488–492. doi: 10.1073/pnas.82.2.488. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Lazarowitz S. G., Wu L. C., Rogers S. G., Elmer J. S. Sequence-specific interaction with the viral AL1 protein identifies a geminivirus DNA replication origin. Plant Cell. 1992 Jul;4(7):799–809. doi: 10.1105/tpc.4.7.799. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Morris-Krsinich B. A., Mullineaux P. M., Donson J., Boulton M. I., Markham P. G., Short M. N., Davies J. W. Bidirectional transcription of maize streak virus DNA and identification of the coat protein gene. Nucleic Acids Res. 1985 Oct 25;13(20):7237–7256. doi: 10.1093/nar/13.20.7237. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Morris B., Richardson K., Eddy P., Zhan X. C., Haley A., Gardner R. Mutagenesis of the AC3 open reading frame of African cassava mosaic virus DNA A reduces DNA B replication and ameliorates disease symptoms. J Gen Virol. 1991 Jun;72(Pt 6):1205–1213. doi: 10.1099/0022-1317-72-6-1205. [DOI] [PubMed] [Google Scholar]
  32. Mullineaux P. M., Rigden J. E., Dry I. B., Krake L. R., Rezaian M. A. Mapping of the polycistronic RNAs of tomato leaf curl geminivirus. Virology. 1993 Mar;193(1):414–423. doi: 10.1006/viro.1993.1138. [DOI] [PubMed] [Google Scholar]
  33. Nevins J. R. E2F: a link between the Rb tumor suppressor protein and viral oncoproteins. Science. 1992 Oct 16;258(5081):424–429. doi: 10.1126/science.1411535. [DOI] [PubMed] [Google Scholar]
  34. Ohkuma Y., Horikoshi M., Roeder R. G., Desplan C. Engrailed, a homeodomain protein, can repress in vitro transcription by competition with the TATA box-binding protein transcription factor IID. Proc Natl Acad Sci U S A. 1990 Mar;87(6):2289–2293. doi: 10.1073/pnas.87.6.2289. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Pilartz M., Jeske H. Abutilon mosaic geminivirus double-stranded DNA is packed into minichromosomes. Virology. 1992 Aug;189(2):800–802. doi: 10.1016/0042-6822(92)90610-2. [DOI] [PubMed] [Google Scholar]
  36. Revington G. N., Sunter G., Bisaro D. M. DNA sequences essential for replication of the B genome component of tomato golden mosaic virus. Plant Cell. 1989 Oct;1(10):985–992. doi: 10.1105/tpc.1.10.985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Roberts M. S., Boundy A., O'Hare P., Pizzorno M. C., Ciufo D. M., Hayward G. S. Direct correlation between a negative autoregulatory response element at the cap site of the herpes simplex virus type 1 IE175 (alpha 4) promoter and a specific binding site for the IE175 (ICP4) protein. J Virol. 1988 Nov;62(11):4307–4320. doi: 10.1128/jvi.62.11.4307-4320.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Rogers S. G., Bisaro D. M., Horsch R. B., Fraley R. T., Hoffmann N. L., Brand L., Elmer J. S., Lloyd A. M. Tomato golden mosaic virus A component DNA replicates autonomously in transgenic plants. Cell. 1986 May 23;45(4):593–600. doi: 10.1016/0092-8674(86)90291-6. [DOI] [PubMed] [Google Scholar]
  39. Sandler A. B., Vande Pol S. B., Spalholz B. A. Repression of bovine papillomavirus type 1 transcription by the E1 replication protein. J Virol. 1993 Sep;67(9):5079–5087. doi: 10.1128/jvi.67.9.5079-5087.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Saunders K., Lucy A., Stanley J. DNA forms of the geminivirus African cassava mosaic virus consistent with a rolling circle mechanism of replication. Nucleic Acids Res. 1991 May 11;19(9):2325–2330. doi: 10.1093/nar/19.9.2325. [DOI] [PMC free article] [PubMed] [Google Scholar]
  41. Stenger D. C., Revington G. N., Stevenson M. C., Bisaro D. M. Replicational release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. Proc Natl Acad Sci U S A. 1991 Sep 15;88(18):8029–8033. doi: 10.1073/pnas.88.18.8029. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Sunter G., Bisaro D. M. Transactivation of geminivirus AR1 and BR1 gene expression by the viral AL2 gene product occurs at the level of transcription. Plant Cell. 1992 Oct;4(10):1321–1331. doi: 10.1105/tpc.4.10.1321. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Sunter G., Bisaro D. M. Transcription map of the B genome component of tomato golden mosaic virus and comparison with A component transcripts. Virology. 1989 Dec;173(2):647–655. doi: 10.1016/0042-6822(89)90577-1. [DOI] [PubMed] [Google Scholar]
  44. Sunter G., Hartitz M. D., Bisaro D. M. Tomato golden mosaic virus leftward gene expression: autoregulation of geminivirus replication protein. Virology. 1993 Jul;195(1):275–280. doi: 10.1006/viro.1993.1374. [DOI] [PubMed] [Google Scholar]
  45. Thomashow M. F., Nutter R., Montoya A. L., Gordon M. P., Nester E. W. Integration and organization of Ti plasmid sequences in crown gall tumors. Cell. 1980 Mar;19(3):729–739. doi: 10.1016/s0092-8674(80)80049-3. [DOI] [PubMed] [Google Scholar]
  46. Thömmes P., Osman T. A., Hayes R. J., Buck K. W. TGMV replication protein AL1 preferentially binds to single-stranded DNA from the common region. FEBS Lett. 1993 Mar 15;319(1-2):95–99. doi: 10.1016/0014-5793(93)80044-u. [DOI] [PubMed] [Google Scholar]
  47. Townsend R., Stanley J., Curson S. J., Short M. N. Major polyadenylated transcripts of cassava latent virus and location of the gene encoding coat protein. EMBO J. 1985 Jan;4(1):33–37. doi: 10.1002/j.1460-2075.1985.tb02313.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Vieira J., Messing J. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene. 1982 Oct;19(3):259–268. doi: 10.1016/0378-1119(82)90015-4. [DOI] [PubMed] [Google Scholar]
  49. Virshup D. M., Russo A. A., Kelly T. J. Mechanism of activation of simian virus 40 DNA replication by protein phosphatase 2A. Mol Cell Biol. 1992 Nov;12(11):4883–4895. doi: 10.1128/mcb.12.11.4883. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Zawel L., Reinberg D. Initiation of transcription by RNA polymerase II: a multi-step process. Prog Nucleic Acid Res Mol Biol. 1993;44:67–108. doi: 10.1016/s0079-6603(08)60217-2. [DOI] [PubMed] [Google Scholar]
  51. Zhan X., Richardson K. A., Haley A., Morris B. A. The activity of the coat protein promoter of chloris striate mosaic virus is enhanced by its own and C1-C2 gene products. Virology. 1993 Mar;193(1):498–502. doi: 10.1006/viro.1993.1153. [DOI] [PubMed] [Google Scholar]

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