Abstract
A cDNA coding for radish (Raphanus sativus L.) acetoacetyl-coenzyme A thiolase (AACT) was cloned by complementation of the erg10 mutation affecting AACT in yeast (Saccharomyces cerevisiae). The longest reading frame encodes a protein of 406 amino acids with a predicted relative molecular weight of 42,032, with significant similarities to eukaryotic and prokaryotic thiolases. There is no evidence for the presence of a leader peptide characteristic, e.g. of glyoxysomal thiolase. Yeast transformants expressing the radish AACT gene placed under the control of the GAL1 promoter exhibited a 10-fold higher enzyme activity than a wild-type yeast strain after induction by galactose. This enzyme activity is exclusively localized in the soluble fraction but not in membranes. These data indicate that we have cloned a gene encoding cytoplasmic (biosynthetic) AACT. Genomic DNA gel blot analysis suggests the presence of a single AACT gene, which is expressed in all parts of the seedling. Expression in cotyledons appears to be light-stimulated. We present preliminary evidence that a smaller transcript represents an antisense species being read from the same gene.
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- Alam A., Britton G., Powls R., Goad J. Aspects related to 3-hydroxy-3-methylglutaryl-CoA synthesis in higher plants. Biochem Soc Trans. 1991 Apr;19(2):164S–164S. doi: 10.1042/bst019164s. [DOI] [PubMed] [Google Scholar]
- Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
- Aviv H., Leder P. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose. Proc Natl Acad Sci U S A. 1972 Jun;69(6):1408–1412. doi: 10.1073/pnas.69.6.1408. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bach T. J., Boronat A., Caelles C., Ferrer A., Weber T., Wettstein A. Aspects related to mevalonate biosynthesis in plants. Lipids. 1991 Aug;26(8):637–648. doi: 10.1007/BF02536429. [DOI] [PubMed] [Google Scholar]
- Basson M. E., Thorsness M., Rine J. Saccharomyces cerevisiae contains two functional genes encoding 3-hydroxy-3-methylglutaryl-coenzyme A reductase. Proc Natl Acad Sci U S A. 1986 Aug;83(15):5563–5567. doi: 10.1073/pnas.83.15.5563. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Becker D. M., Guarente L. High-efficiency transformation of yeast by electroporation. Methods Enzymol. 1991;194:182–187. doi: 10.1016/0076-6879(91)94015-5. [DOI] [PubMed] [Google Scholar]
- Bensadoun A., Weinstein D. Assay of proteins in the presence of interfering materials. Anal Biochem. 1976 Jan;70(1):241–250. doi: 10.1016/s0003-2697(76)80064-4. [DOI] [PubMed] [Google Scholar]
- Chomczynski P. One-hour downward alkaline capillary transfer for blotting of DNA and RNA. Anal Biochem. 1992 Feb 14;201(1):134–139. doi: 10.1016/0003-2697(92)90185-a. [DOI] [PubMed] [Google Scholar]
- Dawes I. W., Hardie I. D. Selective killing of vegetative cells in sporulated yeast cultures by exposure to diethyl ether. Mol Gen Genet. 1974;131(4):281–289. doi: 10.1007/BF00264859. [DOI] [PubMed] [Google Scholar]
- Dequin S., Gloeckler R., Herbert C. J., Boutelet F. Cloning, sequencing and analysis of the yeast S. uvarum ERG10 gene encoding acetoacetyl CoA thiolase. Curr Genet. 1988 Jun;13(6):471–478. doi: 10.1007/BF02427752. [DOI] [PubMed] [Google Scholar]
- Dynan W. S., Tjian R. Control of eukaryotic messenger RNA synthesis by sequence-specific DNA-binding proteins. 1985 Aug 29-Sep 4Nature. 316(6031):774–778. doi: 10.1038/316774a0. [DOI] [PubMed] [Google Scholar]
- Düring K. Ultrasensitive chemiluminescent and colorigenic detection of DNA, RNA, and proteins in plant molecular biology. Anal Biochem. 1991 Aug 1;196(2):433–438. doi: 10.1016/0003-2697(91)90490-k. [DOI] [PubMed] [Google Scholar]
- Engler-Blum G., Meier M., Frank J., Müller G. A. Reduction of background problems in nonradioactive northern and Southern blot analyses enables higher sensitivity than 32P-based hybridizations. Anal Biochem. 1993 May 1;210(2):235–244. doi: 10.1006/abio.1993.1189. [DOI] [PubMed] [Google Scholar]
- Enjuto M., Balcells L., Campos N., Caelles C., Arró M., Boronat A. Arabidopsis thaliana contains two differentially expressed 3-hydroxy-3-methylglutaryl-CoA reductase genes, which encode microsomal forms of the enzyme. Proc Natl Acad Sci U S A. 1994 Feb 1;91(3):927–931. doi: 10.1073/pnas.91.3.927. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gachotte D., Husselstein T., Bard M., Lacroute F., Benveniste P. Isolation and characterization of an Arabidopsis thaliana cDNA encoding a delta 7-sterol-C-5-desaturase by functional complementation of a defective yeast mutant. Plant J. 1996 Mar;9(3):391–398. doi: 10.1046/j.1365-313x.1996.09030391.x. [DOI] [PubMed] [Google Scholar]
- Gehring U., Harris J. I. The active site cysteines of thiolase. Eur J Biochem. 1970 Nov;16(3):492–498. doi: 10.1111/j.1432-1033.1970.tb01108.x. [DOI] [PubMed] [Google Scholar]
- Greenspan M. D., Yudkovitz J. B., Lo C. Y., Chen J. S., Alberts A. W., Hunt V. M., Chang M. N., Yang S. S., Thompson K. L., Chiang Y. C. Inhibition of hydroxymethylglutaryl-coenzyme A synthase by L-659,699. Proc Natl Acad Sci U S A. 1987 Nov;84(21):7488–7492. doi: 10.1073/pnas.84.21.7488. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Groppe J. C., Morse D. E. Isolation of full-length RNA templates for reverse transcription from tissues rich in RNase and proteoglycans. Anal Biochem. 1993 May 1;210(2):337–343. doi: 10.1006/abio.1993.1205. [DOI] [PubMed] [Google Scholar]
- Hahn S., Hoar E. T., Guarente L. Each of three "TATA elements" specifies a subset of the transcription initiation sites at the CYC-1 promoter of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1985 Dec;82(24):8562–8566. doi: 10.1073/pnas.82.24.8562. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Igual J. C., González-Bosch C., Dopazo J., Pérez-Ortín J. E. Phylogenetic analysis of the thiolase family. Implications for the evolutionary origin of peroxisomes. J Mol Evol. 1992 Aug;35(2):147–155. doi: 10.1007/BF00183226. [DOI] [PubMed] [Google Scholar]
- Inouye M. Antisense RNA: its functions and applications in gene regulation--a review. Gene. 1988 Dec 10;72(1-2):25–34. doi: 10.1016/0378-1119(88)90124-2. [DOI] [PubMed] [Google Scholar]
- Kaiser P., Auer B. Rapid shuttle plasmid preparation from yeast cells by transfer to E. coli. Biotechniques. 1993 Apr;14(4):552–552. [PubMed] [Google Scholar]
- Karst F., Lacroute F. Yeast mutant requiring only a sterol as growth supplement. Biochem Biophys Res Commun. 1974 Jul 10;59(1):370–376. doi: 10.1016/s0006-291x(74)80216-0. [DOI] [PubMed] [Google Scholar]
- Kassir Y., Simchen G. Monitoring meiosis and sporulation in Saccharomyces cerevisiae. Methods Enzymol. 1991;194:94–110. doi: 10.1016/0076-6879(91)94009-2. [DOI] [PubMed] [Google Scholar]
- Kornblatt J. A., Rudney H. Two forms of acetoacetyl coenzyme A thiolase in yeast. II. Intracellular location and relationship to growth. J Biol Chem. 1971 Jul 25;246(14):4424–4430. [PubMed] [Google Scholar]
- Kyte J., Doolittle R. F. A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982 May 5;157(1):105–132. doi: 10.1016/0022-2836(82)90515-0. [DOI] [PubMed] [Google Scholar]
- Mathieu M., Zeelen J. P., Pauptit R. A., Erdmann R., Kunau W. H., Wierenga R. K. The 2.8 A crystal structure of peroxisomal 3-ketoacyl-CoA thiolase of Saccharomyces cerevisiae: a five-layered alpha beta alpha beta alpha structure constructed from two core domains of identical topology. Structure. 1994 Sep 15;2(9):797–808. doi: 10.1016/s0969-2126(94)00081-6. [DOI] [PubMed] [Google Scholar]
- McClung J. K., Gonzales R. A. Purification of plasmid DNA by fast protein liquid chromatography on superose 6 preparative grade. Anal Biochem. 1989 Mar;177(2):378–382. doi: 10.1016/0003-2697(89)90069-9. [DOI] [PubMed] [Google Scholar]
- Mol J. N., van der Krol A. R., van Tunen A. J., van Blokland R., de Lange P., Stuitje A. R. Regulation of plant gene expression by antisense RNA. FEBS Lett. 1990 Aug 1;268(2):427–430. doi: 10.1016/0014-5793(90)81298-3. [DOI] [PubMed] [Google Scholar]
- Murphy D. J. Manipulation of lipid metabolism in transgenic plants: biotechnological goals and biochemical realities. Biochem Soc Trans. 1994 Nov;22(4):926–931. doi: 10.1042/bst0220926. [DOI] [PubMed] [Google Scholar]
- Peoples O. P., Masamune S., Walsh C. T., Sinskey A. J. Biosynthetic thiolase from Zoogloea ramigera. III. Isolation and characterization of the structural gene. J Biol Chem. 1987 Jan 5;262(1):97–102. [PubMed] [Google Scholar]
- Preisig-Müller R., Kindl H. Thiolase mRNA translated in vitro yields a peptide with a putative N-terminal presequence. Plant Mol Biol. 1993 Apr;22(1):59–66. doi: 10.1007/BF00038995. [DOI] [PubMed] [Google Scholar]
- Riou C., Tourte Y., Lacroute F., Karst F. Isolation and characterization of a cDNA encoding Arabidopsis thaliana mevalonate kinase by genetic complementation in yeast. Gene. 1994 Oct 21;148(2):293–297. doi: 10.1016/0378-1119(94)90701-3. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schmitz G. G., Walter T., Seibl R., Kessler C. Nonradioactive labeling of oligonucleotides in vitro with the hapten digoxigenin by tailing with terminal transferase. Anal Biochem. 1991 Jan;192(1):222–231. doi: 10.1016/0003-2697(91)90212-c. [DOI] [PubMed] [Google Scholar]
- Schneider J. C., Guarente L. Vectors for expression of cloned genes in yeast: regulation, overproduction, and underproduction. Methods Enzymol. 1991;194:373–388. doi: 10.1016/0076-6879(91)94028-b. [DOI] [PubMed] [Google Scholar]
- Servouse M., Karst F. Regulation of early enzymes of ergosterol biosynthesis in Saccharomyces cerevisiae. Biochem J. 1986 Dec 1;240(2):541–547. doi: 10.1042/bj2400541. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sprague G. F., Jr Assay of yeast mating reaction. Methods Enzymol. 1991;194:77–93. doi: 10.1016/0076-6879(91)94008-z. [DOI] [PubMed] [Google Scholar]
- Stermer B. A., Bianchini G. M., Korth K. L. Regulation of HMG-CoA reductase activity in plants. J Lipid Res. 1994 Jul;35(7):1133–1140. [PubMed] [Google Scholar]
- Thomas B. J., Rothstein R. Elevated recombination rates in transcriptionally active DNA. Cell. 1989 Feb 24;56(4):619–630. doi: 10.1016/0092-8674(89)90584-9. [DOI] [PubMed] [Google Scholar]
- Thompson S., Mayerl F., Peoples O. P., Masamune S., Sinskey A. J., Walsh C. T. Mechanistic studies on beta-ketoacyl thiolase from Zoogloea ramigera: identification of the active-site nucleophile as Cys89, its mutation to Ser89, and kinetic and thermodynamic characterization of wild-type and mutant enzymes. Biochemistry. 1989 Jul 11;28(14):5735–5742. doi: 10.1021/bi00440a006. [DOI] [PubMed] [Google Scholar]
- Tomoda H., Kumagai H., Tanaka H., Omura S. F-244 specifically inhibits 3-hydroxy-3-methylglutaryl coenzyme A synthase. Biochim Biophys Acta. 1987 Dec 14;922(3):351–356. [PubMed] [Google Scholar]
- Tsay Y. H., Robinson G. W. Cloning and characterization of ERG8, an essential gene of Saccharomyces cerevisiae that encodes phosphomevalonate kinase. Mol Cell Biol. 1991 Feb;11(2):620–631. doi: 10.1128/mcb.11.2.620. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weber T., Bach T. J. Conversion of acetyl-coenzyme A into 3-hydroxy-3-methylglutaryl-coenzyme A in radish seedlings. Evidence of a single monomeric protein catalyzing a FeII/quinone-stimulated double condensation reaction. Biochim Biophys Acta. 1994 Feb 10;1211(1):85–96. doi: 10.1016/0005-2760(94)90142-2. [DOI] [PubMed] [Google Scholar]
- Williams S. F., Palmer M. A., Peoples O. P., Walsh C. T., Sinskey A. J., Masamune S. Biosynthetic thiolase from Zoogloea ramigera. Mutagenesis of the putative active-site base Cys-378 to Ser-378 changes the partitioning of the acetyl S-enzyme intermediate. J Biol Chem. 1992 Aug 15;267(23):16041–16043. [PubMed] [Google Scholar]
- von Heijne G., Steppuhn J., Herrmann R. G. Domain structure of mitochondrial and chloroplast targeting peptides. Eur J Biochem. 1989 Apr 1;180(3):535–545. doi: 10.1111/j.1432-1033.1989.tb14679.x. [DOI] [PubMed] [Google Scholar]