Abstract
Aspergillus parasiticus and Aspergillus sojae are two morphologically similar species belonging to the Aspergillus section flavi. A new method to distinguish the two species, the aflatoxin producer A. parasiticus and the koji mold A. sojae, was developed. Single primers with arbitrary sequences were used to generate random amplified polymorphic DNA (RAPD) markers from strains of these two species. Three decamers, OPA-04, OPB-10, and OPR-01, allowed adequate discrimination between strains of A. parasiticus and A. sojae in RAPD analyses. A. sojae was further separated into group I and group II with the three primers. On the other hand, A. parasiticus was divided into group A and group B when amplified with OPA-04 and OPR-10 primers. The previously misidentified stain CCRC 32423 and the misclassified strain CCRC 30227 were identified as Aspergillus flavus and A. sojae, respectively, on the basis of RAPD patterns and morphological characteristics. We suggest that the RAPD technique is a rapid and reliable tool to distinguish A. parasiticus from A. sojae.
Full Text
The Full Text of this article is available as a PDF (316.6 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Aufauvre-Brown A., Cohen J., Holden D. W. Use of randomly amplified polymorphic DNA markers to distinguish isolates of Aspergillus fumigatus. J Clin Microbiol. 1992 Nov;30(11):2991–2993. doi: 10.1128/jcm.30.11.2991-2993.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Crowhurst R. N., Hawthorne B. T., Rikkerink E. H., Templeton M. D. Differentiation of Fusarium solani f. sp. cucurbitae races 1 and 2 by random amplification of polymorphic DNA. Curr Genet. 1991 Nov;20(5):391–396. doi: 10.1007/BF00317067. [DOI] [PubMed] [Google Scholar]
- Loudon K. W., Burnie J. P., Coke A. P., Matthews R. C. Application of polymerase chain reaction to fingerprinting Aspergillus fumigatus by random amplification of polymorphic DNA. J Clin Microbiol. 1993 May;31(5):1117–1121. doi: 10.1128/jcm.31.5.1117-1121.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rafalski J. A., Tingey S. V. Genetic diagnostics in plant breeding: RAPDs, microsatellites and machines. Trends Genet. 1993 Aug;9(8):275–280. doi: 10.1016/0168-9525(93)90013-8. [DOI] [PubMed] [Google Scholar]
- Vilgalys R., Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol. 1990 Aug;172(8):4238–4246. doi: 10.1128/jb.172.8.4238-4246.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wei D. L., Jong S. C. Production of aflatoxins by strains of the Aspergillus flavus group maintained in ATCC. Mycopathologia. 1986 Jan;93(1):19–24. doi: 10.1007/BF00437010. [DOI] [PubMed] [Google Scholar]
- Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 1990 Dec 25;18(24):7213–7218. doi: 10.1093/nar/18.24.7213. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Williams J. G., Kubelik A. R., Livak K. J., Rafalski J. A., Tingey S. V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990 Nov 25;18(22):6531–6535. doi: 10.1093/nar/18.22.6531. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Williams J. G., Reiter R. S., Young R. M., Scolnik P. A. Genetic mapping of mutations using phenotypic pools and mapped RAPD markers. Nucleic Acids Res. 1993 Jun 11;21(11):2697–2702. doi: 10.1093/nar/21.11.2697. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yu K., Pauls K. P. Optimization of the PCR program for RAPD analysis. Nucleic Acids Res. 1992 May 25;20(10):2606–2606. doi: 10.1093/nar/20.10.2606. [DOI] [PMC free article] [PubMed] [Google Scholar]
