Skip to main content
Applied and Environmental Microbiology logoLink to Applied and Environmental Microbiology
. 1995 Dec;61(12):4500–4504. doi: 10.1128/aem.61.12.4500-4504.1995

Substrate diversity and expression of the 2,4,5-trichlorophenoxyacetic acid oxygenase from Burkholderia cepacia AC1100.

C E Danganan 1, S Shankar 1, R W Ye 1, A M Chakrabarty 1
PMCID: PMC167763  PMID: 8534119

Abstract

Burkholderia cepacia AC1100 uses the chlorinated aromatic compound 2,4,5-trichlorophenoxyacetic acid as a sole source of carbon and energy. The genes encoding the proteins involved in the first step (tftA and tftB [previously designated tftA1 and tftA2, respectively]) have been cloned and sequenced. The oxygenase, TftAB, is capable of converting not only 2,4,5-trichlorophenoxyacetic acid to 2,4,5-trichlorophenol but also a wide range of chlorinated aromatic phenoxyacetates to their corresponding phenolic derivatives, as shown by whole-cell and cell-free assays. The rate of substrate utilization by TftAB depends upon the extent of chlorination of the substrate, the positions of the chlorines, and the phenoxy group. These results indicate a mechanistic similarity between TftAB and the 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate-dependent dioxygenase, TfdA, from Alcaligenes eutrophus JMP134. The promoter of the oxygenase genes was localized by promoter-probe analysis, and the transcriptional start site was identified by primer extension. The beta-galactosidase activity of the construct containing the promoter region cloned upstream of the beta-galactosidase gene in the promoter-probe vector pKRZ-1 showed that this construct is constitutively expressed in Escherichia coli and in AC1100. The -35 and -10 regions of the oxygenase genes show significant sequence identity to typical Escherichia coli sigma 70 promoters.

Full Text

The Full Text of this article is available as a PDF (324.4 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bagdasarian M. M., Amann E., Lurz R., Rückert B., Bagdasarian M. Activity of the hybrid trp-lac (tac) promoter of Escherichia coli in Pseudomonas putida. Construction of broad-host-range, controlled-expression vectors. Gene. 1983 Dec;26(2-3):273–282. doi: 10.1016/0378-1119(83)90197-x. [DOI] [PubMed] [Google Scholar]
  2. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  3. Danganan C. E., Ye R. W., Daubaras D. L., Xun L., Chakrabarty A. M. Nucleotide sequence and functional analysis of the genes encoding 2,4,5-trichlorophenoxyacetic acid oxygenase in Pseudomonas cepacia AC1100. Appl Environ Microbiol. 1994 Nov;60(11):4100–4106. doi: 10.1128/aem.60.11.4100-4106.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Daubaras D. L., Hershberger C. D., Kitano K., Chakrabarty A. M. Sequence analysis of a gene cluster involved in metabolism of 2,4,5-trichlorophenoxyacetic acid by Burkholderia cepacia AC1100. Appl Environ Microbiol. 1995 Apr;61(4):1279–1289. doi: 10.1128/aem.61.4.1279-1289.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Ditta G., Stanfield S., Corbin D., Helinski D. R. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347–7351. doi: 10.1073/pnas.77.12.7347. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Franklin F. C., Bagdasarian M., Bagdasarian M. M., Timmis K. N. Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway. Proc Natl Acad Sci U S A. 1981 Dec;78(12):7458–7462. doi: 10.1073/pnas.78.12.7458. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Fukumori F., Hausinger R. P. Alcaligenes eutrophus JMP134 "2,4-dichlorophenoxyacetate monooxygenase" is an alpha-ketoglutarate-dependent dioxygenase. J Bacteriol. 1993 Apr;175(7):2083–2086. doi: 10.1128/jb.175.7.2083-2086.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Fukumori F., Hausinger R. P. Purification and characterization of 2,4-dichlorophenoxyacetate/alpha-ketoglutarate dioxygenase. J Biol Chem. 1993 Nov 15;268(32):24311–24317. [PubMed] [Google Scholar]
  9. Grant W. F. The genotoxic effects of 2,4,5-T. Mutat Res. 1979;65(2):83–119. doi: 10.1016/0165-1110(79)90001-0. [DOI] [PubMed] [Google Scholar]
  10. Harker A. R., Olsen R. H., Seidler R. J. Phenoxyacetic acid degradation by the 2,4-dichlorophenoxyacetic acid (TFD) pathway of plasmid pJP4: mapping and characterization of the TFD regulatory gene, tfdR. J Bacteriol. 1989 Jan;171(1):314–320. doi: 10.1128/jb.171.1.314-320.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Haugland R. A., Sangodkar U. M., Sferra P. R., Chakrabarty A. M. Cloning and characterization of a chromosomal DNA region required for growth on 2,4,5-T by Pseudomonas cepacia AC1100. Gene. 1991 Apr;100:65–73. doi: 10.1016/0378-1119(91)90351-b. [DOI] [PubMed] [Google Scholar]
  12. Haugland R. A., Schlemm D. J., Lyons R. P., 3rd, Sferra P. R., Chakrabarty A. M. Degradation of the chlorinated phenoxyacetate herbicides 2,4-dichlorophenoxyacetic acid and 2,4,5-trichlorophenoxyacetic acid by pure and mixed bacterial cultures. Appl Environ Microbiol. 1990 May;56(5):1357–1362. doi: 10.1128/aem.56.5.1357-1362.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Inouye S., Nakazawa A., Nakazawa T. Molecular cloning of gene xylS of the TOL plasmid: evidence for positive regulation of the xylDEGF operon by xylS. J Bacteriol. 1981 Nov;148(2):413–418. doi: 10.1128/jb.148.2.413-418.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Jeffrey W. H., Cuskey S. M., Chapman P. J., Resnick S., Olsen R. H. Characterization of Pseudomonas putida mutants unable to catabolize benzoate: cloning and characterization of Pseudomonas genes involved in benzoate catabolism and isolation of a chromosomal DNA fragment able to substitute for xylS in activation of the TOL lower-pathway promoter. J Bacteriol. 1992 Aug;174(15):4986–4996. doi: 10.1128/jb.174.15.4986-4996.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Karns J. S., Duttagupta S., Chakrabarty A. M. Regulation of 2,4,5-trichlorophenoxyacetic acid and chlorophenol metabolism in Pseudomonas cepacia AC1100. Appl Environ Microbiol. 1983 Nov;46(5):1182–1186. doi: 10.1128/aem.46.5.1182-1186.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Karns J. S., Kilbane J. J., Chatterjee D. K., Chakrabarty A. M. Microbial biodegradation of 2,4,5-trichlorophenoxyacetic acid and chlorophenols. Basic Life Sci. 1984;28:3–21. doi: 10.1007/978-1-4684-4715-6_2. [DOI] [PubMed] [Google Scholar]
  17. Karns J. S., Kilbane J. J., Duttagupta S., Chakrabarty A. M. Metabolism of Halophenols by 2,4,5-trichlorophenoxyacetic acid-degrading Pseudomonas cepacia. Appl Environ Microbiol. 1983 Nov;46(5):1176–1181. doi: 10.1128/aem.46.5.1176-1181.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Kellogg S. T., Chatterjee D. K., Chakrabarty A. M. Plasmid-assisted molecular breeding: new technique for enhanced biodegradation of persistent toxic chemicals. Science. 1981 Dec 4;214(4525):1133–1135. doi: 10.1126/science.7302584. [DOI] [PubMed] [Google Scholar]
  19. Kilbane J. J., Chatterjee D. K., Karns J. S., Kellogg S. T., Chakrabarty A. M. Biodegradation of 2,4,5-trichlorophenoxyacetic acid by a pure culture of Pseudomonas cepacia. Appl Environ Microbiol. 1982 Jul;44(1):72–78. doi: 10.1128/aem.44.1.72-78.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. King R. J., Short K. A., Seidler R. J. Assay for detection and enumeration of genetically engineered microorganisms which is based on the activity of a deregulated 2,4-dichlorophenoxyacetate monooxygenase. Appl Environ Microbiol. 1991 Jun;57(6):1790–1792. doi: 10.1128/aem.57.6.1790-1792.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Mermod N., Ramos J. L., Bairoch A., Timmis K. N. The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon. Mol Gen Genet. 1987 May;207(2-3):349–354. doi: 10.1007/BF00331600. [DOI] [PubMed] [Google Scholar]
  22. Neidle E. L., Hartnett C., Ornston L. N., Bairoch A., Rekik M., Harayama S. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. J Bacteriol. 1991 Sep;173(17):5385–5395. doi: 10.1128/jb.173.17.5385-5395.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Neidle E., Hartnett C., Ornston L. N., Bairoch A., Rekik M., Harayama S. cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily. Eur J Biochem. 1992 Feb 15;204(1):113–120. doi: 10.1111/j.1432-1033.1992.tb16612.x. [DOI] [PubMed] [Google Scholar]
  24. Reineke W., Knackmuss H. J. Chemical structure and biodegradability of halogenate aromatic compounds. Substituent effects on 1,2-dioxygenation of benzoic acid. Biochim Biophys Acta. 1978 Sep 6;542(3):412–423. doi: 10.1016/0304-4165(78)90372-0. [DOI] [PubMed] [Google Scholar]
  25. Rothmel R. K., Shinabarger D. L., Parsek M. R., Aldrich T. L., Chakrabarty A. M. Functional analysis of the Pseudomonas putida regulatory protein CatR: transcriptional studies and determination of the CatR DNA-binding site by hydroxyl-radical footprinting. J Bacteriol. 1991 Aug;173(15):4717–4724. doi: 10.1128/jb.173.15.4717-4724.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Tomasi I., Artaud I., Bertheau Y., Mansuy D. Metabolism of polychlorinated phenols by Pseudomonas cepacia AC1100: determination of the first two steps and specific inhibitory effect of methimazole. J Bacteriol. 1995 Jan;177(2):307–311. doi: 10.1128/jb.177.2.307-311.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Wackett L. P., Gibson D. T. Degradation of trichloroethylene by toluene dioxygenase in whole-cell studies with Pseudomonas putida F1. Appl Environ Microbiol. 1988 Jul;54(7):1703–1708. doi: 10.1128/aem.54.7.1703-1708.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Xun L., Topp E., Orser C. S. Diverse substrate range of a Flavobacterium pentachlorophenol hydroxylase and reaction stoichiometries. J Bacteriol. 1992 May;174(9):2898–2902. doi: 10.1128/jb.174.9.2898-2902.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Applied and Environmental Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES