Skip to main content
NCBI home page
Applied and Environmental Microbiology logoLink to Applied and Environmental Microbiology
. 1996 Apr;62(4):1467–1470. doi: 10.1128/aem.62.4.1467-1470.1996

Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains.

E Kim 1, P J Aversano 1, M F Romine 1, R P Schneider 1, G J Zylstra 1
PMCID: PMC167919  PMID: 8919814

Abstract

The cloned genes for aromatic hydrocarbon degradation from Sphingomonas yanoikuyae B1 were utilized in Southern hybridization experiments with Sphingomonas strains from the surface and deep-subsurface environments. One hybridization pattern was obtained with BamHI-digested genomic DNAs for two surface strains, while a differing pattern was seen for five deep-subsurface strains. The cross-hybridizing genes were located in the chromosomes of the surface strains and on plasmids in the deep-subsurface strains.

Full Text

The Full Text of this article is available as a PDF (380.1 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Assinder S. J., Williams P. A. The TOL plasmids: determinants of the catabolism of toluene and the xylenes. Adv Microb Physiol. 1990;31:1–69. doi: 10.1016/s0065-2911(08)60119-8. [DOI] [PubMed] [Google Scholar]
  2. Fredrickson J. K., Balkwill D. L., Drake G. R., Romine M. F., Ringelberg D. B., White D. C. Aromatic-degrading Sphingomonas isolates from the deep subsurface. Appl Environ Microbiol. 1995 May;61(5):1917–1922. doi: 10.1128/aem.61.5.1917-1922.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Fredrickson J. K., Balkwill D. L., Zachara J. M., Li S. M., Brockman F. J., Simmons M. A. Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the atlantic coastal plain. Appl Environ Microbiol. 1991 Feb;57(2):402–411. doi: 10.1128/aem.57.2.402-411.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Fredrickson J. K., Brockman F. J., Workman D. J., Li S. W., Stevens T. O. Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds. Appl Environ Microbiol. 1991 Mar;57(3):796–803. doi: 10.1128/aem.57.3.796-803.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Furukawa K. Molecular genetics and evolutionary relationship of PCB-degrading bacteria. Biodegradation. 1994 Dec;5(3-4):289–300. doi: 10.1007/BF00696466. [DOI] [PubMed] [Google Scholar]
  6. Furukawa K., Simon J. R., Chakrabarty A. M. Common induction and regulation of biphenyl, xylene/toluene, and salicylate catabolism in Pseudomonas paucimobilis. J Bacteriol. 1983 Jun;154(3):1356–1362. doi: 10.1128/jb.154.3.1356-1362.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Gibson D. T., Roberts R. L., Wells M. C., Kobal V. M. Oxidation of biphenyl by a Beijerinckia species. Biochem Biophys Res Commun. 1973 Jan 23;50(2):211–219. doi: 10.1016/0006-291x(73)90828-0. [DOI] [PubMed] [Google Scholar]
  8. Goyal A. K., Zylstra G. J. Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39. Appl Environ Microbiol. 1996 Jan;62(1):230–236. doi: 10.1128/aem.62.1.230-236.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Kim E., Zylstra G. J. Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp. strain B1. J Bacteriol. 1995 Jun;177(11):3095–3103. doi: 10.1128/jb.177.11.3095-3103.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Kiyohara H., Sugiyama M., Mondello F. J., Gibson D. T., Yano K. Plasmid involvement in the degradation of polycyclic aromatic hydrocarbons by a Beijerinckia species. Biochem Biophys Res Commun. 1983 Mar 29;111(3):939–945. doi: 10.1016/0006-291x(83)91390-6. [DOI] [PubMed] [Google Scholar]
  11. Kuhm A. E., Stolz A., Knackmuss H. J. Metabolism of naphthalene by the biphenyl-degrading bacterium Pseudomonas paucimobilis Q1. Biodegradation. 1991;2(2):115–120. doi: 10.1007/BF00114601. [DOI] [PubMed] [Google Scholar]
  12. Mondello F. J. Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation. J Bacteriol. 1989 Mar;171(3):1725–1732. doi: 10.1128/jb.171.3.1725-1732.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Serdar C. M., Gibson D. T. Studies of nucleotide sequence homology between naphthalene-utilizing strains of bacteria. Biochem Biophys Res Commun. 1989 Oct 31;164(2):772–779. doi: 10.1016/0006-291x(89)91526-x. [DOI] [PubMed] [Google Scholar]
  14. Stillwell L. C., Thurston S. J., Schneider R. P., Romine M. F., Fredrickson J. K., Saffer J. D. Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199. J Bacteriol. 1995 Aug;177(15):4537–4539. doi: 10.1128/jb.177.15.4537-4539.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Yen K. M., Serdar C. M. Genetics of naphthalene catabolism in pseudomonads. Crit Rev Microbiol. 1988;15(3):247–268. doi: 10.3109/10408418809104459. [DOI] [PubMed] [Google Scholar]
  16. Zylstra G. J., McCombie W. R., Gibson D. T., Finette B. A. Toluene degradation by Pseudomonas putida F1: genetic organization of the tod operon. Appl Environ Microbiol. 1988 Jun;54(6):1498–1503. doi: 10.1128/aem.54.6.1498-1503.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Applied and Environmental Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES