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. 1996 Jul;62(7):2381–2386. doi: 10.1128/aem.62.7.2381-2386.1996

Manganese peroxidase mRNA and enzyme activity levels during bioremediation of polycyclic aromatic hydrocarbon-contaminated soil with Phanerochaete chrysosporium.

B W Bogan 1, B Schoenike 1, R T Lamar 1, D Cullen 1
PMCID: PMC168019  PMID: 8779576

Abstract

mRNA extraction from soil and quantitation by competitive reverse transcription-PCR were combined to study the expression of three manganese peroxidase (MnP) genes during removal of polycyclic aromatic hydrocarbons from cultures of Phanerochaete chrysosporium grown in presterilized soil. Periods of high mnp transcript levels and extractable MnP enzyme activity were temporally correlated, although separated by a short (1- to 2-day) lag period. This time frame also coincided with maximal rates of fluorene oxidation and chrysene disappearance in soil cultures, supporting the hypothesis that high ionization potential polycyclic aromatic hydrocarbons are oxidized in soil via MnP-dependent mechanisms. The patterns of transcript abundance over time in soil-grown P. chrysosporium were similar for all three of the mnp mRNAs studied, indicating that transcription of this gene family may be coordinately regulated under these growth conditions.

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Selected References

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  1. Bogan B. W., Lamar R. T., Hammel K. E. Fluorene Oxidation In Vivo by Phanerochaete chrysosporium and In Vitro during Manganese Peroxidase-Dependent Lipid Peroxidation. Appl Environ Microbiol. 1996 May;62(5):1788–1792. doi: 10.1128/aem.62.5.1788-1792.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bogan B. W., Lamar R. T. One-electron oxidation in the degradation of creosote polycyclic aromatic hydrocarbons by Phanerochaete chrysosporium. Appl Environ Microbiol. 1995 Jul;61(7):2631–2635. doi: 10.1128/aem.61.7.2631-2635.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Boominathan K., Reddy C. A. cAMP-mediated differential regulation of lignin peroxidase and manganese-dependent peroxidase production in the white-rot basidiomycete Phanerochaete chrysosporium. Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5586–5590. doi: 10.1073/pnas.89.12.5586. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Bumpus J. A. Biodegradation of polycyclic hydrocarbons by Phanerochaete chrysosporium. Appl Environ Microbiol. 1989 Jan;55(1):154–158. doi: 10.1128/aem.55.1.154-158.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Covert S. F., Vanden Wymelenberg A., Cullen D. Structure, organization, and transcription of a cellobiohydrolase gene cluster from Phanerochaete chrysosporium. Appl Environ Microbiol. 1992 Jul;58(7):2168–2175. doi: 10.1128/aem.58.7.2168-2175.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Dass S. B., Reddy C. A. Characterization of extracellular peroxidases produced by acetate-buffered cultures of the lignin-degrading basidiomycete Phanerochaete chrysosporium. FEMS Microbiol Lett. 1990 Jun 1;57(3):221–224. doi: 10.1111/j.1574-6968.1990.tb04233.x. [DOI] [PubMed] [Google Scholar]
  7. Datta A., Bettermann A., Kirk T. K. Identification of a specific manganese peroxidase among ligninolytic enzymes secreted by Phanerochaete chrysosporium during wood decay. Appl Environ Microbiol. 1991 May;57(5):1453–1460. doi: 10.1128/aem.57.5.1453-1460.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Gaskell J., Stewart P., Kersten P. J., Covert S. F., Reiser J., Cullen D. Establishment of genetic linkage by allele-specific polymerase chain reaction: application to the lignin peroxidase gene family of Phanerochaete chrysosporium. Biotechnology (N Y) 1994 Dec;12(13):1372–1375. doi: 10.1038/nbt1294-1372. [DOI] [PubMed] [Google Scholar]
  9. Glumoff T., Harvey P. J., Molinari S., Goble M., Frank G., Palmer J. M., Smit J. D., Leisola M. S. Lignin peroxidase from Phanerochaete chrysosporium. Molecular and kinetic characterization of isozymes. Eur J Biochem. 1990 Feb 14;187(3):515–520. doi: 10.1111/j.1432-1033.1990.tb15333.x. [DOI] [PubMed] [Google Scholar]
  10. Godfrey B. J., Mayfield M. B., Brown J. A., Gold M. H. Characterization of a gene encoding a manganese peroxidase from Phanerochaete chrysosporium. Gene. 1990 Sep 1;93(1):119–124. doi: 10.1016/0378-1119(90)90144-g. [DOI] [PubMed] [Google Scholar]
  11. Haemmerli S. D., Leisola M. S., Sanglard D., Fiechter A. Oxidation of benzo(a)pyrene by extracellular ligninases of Phanerochaete chrysosporium. Veratryl alcohol and stability of ligninase. J Biol Chem. 1986 May 25;261(15):6900–6903. [PubMed] [Google Scholar]
  12. Hammel K. E., Gai W. Z., Green B., Moen M. A. Oxidative degradation of phenanthrene by the ligninolytic fungus Phanerochaete chrysosporium. Appl Environ Microbiol. 1992 Jun;58(6):1832–1838. doi: 10.1128/aem.58.6.1832-1838.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Hammel K. E., Green B., Gai W. Z. Ring fission of anthracene by a eukaryote. Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10605–10608. doi: 10.1073/pnas.88.23.10605. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Hammel K. E., Kalyanaraman B., Kirk T. K. Oxidation of polycyclic aromatic hydrocarbons and dibenzo[p]-dioxins by Phanerochaete chrysosporium ligninase. J Biol Chem. 1986 Dec 25;261(36):16948–16952. [PubMed] [Google Scholar]
  15. Johnston C. G., Aust S. D. Detection of Phanerochaete chrysosporium in soil by PCR and restriction enzyme analysis. Appl Environ Microbiol. 1994 Jul;60(7):2350–2354. doi: 10.1128/aem.60.7.2350-2354.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Lamar R. T., Larsen M. J., Kirk T. K. Sensitivity to and Degradation of Pentachlorophenol by Phanerochaete spp. Appl Environ Microbiol. 1990 Nov;56(11):3519–3526. doi: 10.1128/aem.56.11.3519-3526.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Lamar R. T., Schoenike B., Vanden Wymelenberg A., Stewart P., Dietrich D. M., Cullen D. Quantitation of fungal mRNAs in complex substrates by reverse transcription PCR and its application to Phanerochaete chrysosporium-colonized soil. Appl Environ Microbiol. 1995 Jun;61(6):2122–2126. doi: 10.1128/aem.61.6.2122-2126.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Mayfield M. B., Kishi K., Alic M., Gold M. H. Homologous expression of recombinant manganese peroxidase in Phanerochaete chrysosporium. Appl Environ Microbiol. 1994 Dec;60(12):4303–4309. doi: 10.1128/aem.60.12.4303-4309.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Moen M. A., Hammel K. E. Lipid Peroxidation by the Manganese Peroxidase of Phanerochaete chrysosporium Is the Basis for Phenanthrene Oxidation by the Intact Fungus. Appl Environ Microbiol. 1994 Jun;60(6):1956–1961. doi: 10.1128/aem.60.6.1956-1961.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Orth A. B., Rzhetskaya M., Cullen D., Tien M. Characterization of a cDNA encoding a manganese peroxidase from Phanerochaete chrysosporium: genomic organization of lignin and manganese peroxidase-encoding genes. Gene. 1994 Oct 11;148(1):161–165. doi: 10.1016/0378-1119(94)90251-8. [DOI] [PubMed] [Google Scholar]
  21. Pannetier C., Delassus S., Darche S., Saucier C., Kourilsky P. Quantitative titration of nucleic acids by enzymatic amplification reactions run to saturation. Nucleic Acids Res. 1993 Feb 11;21(3):577–583. doi: 10.1093/nar/21.3.577. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Pease E. A., Andrawis A., Tien M. Manganese-dependent peroxidase from Phanerochaete chrysosporium. Primary structure deduced from cDNA sequence. J Biol Chem. 1989 Aug 15;264(23):13531–13535. [PubMed] [Google Scholar]
  23. Pease E. A., Tien M. Heterogeneity and regulation of manganese peroxidases from Phanerochaete chrysosporium. J Bacteriol. 1992 Jun;174(11):3532–3540. doi: 10.1128/jb.174.11.3532-3540.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Selvaratnam S., Schoedel B. A., McFarland B. L., Kulpa C. F. Application of reverse transcriptase PCR for monitoring expression of the catabolic dmpN gene in a phenol-degrading sequencing batch reactor. Appl Environ Microbiol. 1995 Nov;61(11):3981–3985. doi: 10.1128/aem.61.11.3981-3985.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Stewart P., Kersten P., Vanden Wymelenberg A., Gaskell J., Cullen D. Lignin peroxidase gene family of Phanerochaete chrysosporium: complex regulation by carbon and nitrogen limitation and identification of a second dimorphic chromosome. J Bacteriol. 1992 Aug;174(15):5036–5042. doi: 10.1128/jb.174.15.5036-5042.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Urzúa U., Fernando Larrondo L., Lobos S., Larraín J., Vicuña R. Oxidation reactions catalyzed by manganese peroxidase isoenzymes from Ceriporiopsis subvermispora. FEBS Lett. 1995 Sep 4;371(2):132–136. doi: 10.1016/0014-5793(95)00874-9. [DOI] [PubMed] [Google Scholar]
  27. Vares T., Kalsi M., Hatakka A. Lignin Peroxidases, Manganese Peroxidases, and Other Ligninolytic Enzymes Produced by Phlebia radiata during Solid-State Fermentation of Wheat Straw. Appl Environ Microbiol. 1995 Oct;61(10):3515–3520. doi: 10.1128/aem.61.10.3515-3520.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Vazquez-Duhalt R., Westlake D. W., Fedorak P. M. Lignin peroxidase oxidation of aromatic compounds in systems containing organic solvents. Appl Environ Microbiol. 1994 Feb;60(2):459–466. doi: 10.1128/aem.60.2.459-466.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]

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