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American Journal of Human Genetics logoLink to American Journal of Human Genetics
. 1993 Apr;52(4):668–676.

De novo truncation of chromosome 16p and healing with (TTAGGG)n in the alpha-thalassemia/mental retardation syndrome (ATR-16).

J Lamb 1, P C Harris 1, A O Wilkie 1, W G Wood 1, J G Dauwerse 1, D R Higgs 1
PMCID: PMC1682074  PMID: 8460633

Abstract

We have previously described a series of patients in whom the deletion of 1-2 megabases (Mb) of DNA from the tip of the short arm of chromosome 16 (band 16p13.3) is associated with alpha-thalassemia/mental retardation syndrome (ATR-16). We now show that one of these patients has a de novo truncation of the terminal 2 Mb of chromosome 16p and that telomeric sequence (TTAGGG)n has been added at the site of breakage. This suggests that the chromosomal break, which is paternal in origin and which probably arose at meiosis, has been stabilized in vivo by the direct addition of the telomeric sequence. Sequence comparisons of this breakpoint with that of a previously described chromosomal truncation (alpha alpha)TI do not reveal extensive sequence homology. However, both breakpoints show minimal complementarity (3-4 bp) to the proposed RNA template of human telomerase at the site at which telomere repeats have been added. Unlike previously characterized individuals with ATR-16, the clinical features of this patient appear to be solely due to monosomy for the terminal portion of 16p13.3. The identification of further patients with "pure" monosomy for the tip of chromosome 16p will be important for defining the loci contributing to the phenotype of this syndrome.

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Selected References

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  1. Allshire R. C., Gosden J. R., Cross S. H., Cranston G., Rout D., Sugawara N., Szostak J. W., Fantes P. A., Hastie N. D. Telomeric repeat from T. thermophila cross hybridizes with human telomeres. Nature. 1988 Apr 14;332(6165):656–659. doi: 10.1038/332656a0. [DOI] [PubMed] [Google Scholar]
  2. Blonden L. A., den Dunnen J. T., van Paassen H. M., Wapenaar M. C., Grootscholten P. M., Ginjaar H. B., Bakker E., Pearson P. L., van Ommen G. J. High resolution deletion breakpoint mapping in the DMD gene by whole cosmid hybridization. Nucleic Acids Res. 1989 Jul 25;17(14):5611–5621. doi: 10.1093/nar/17.14.5611. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Borochovitz D., Levin S. E., Krawitz S., Stevens K., Metz J. Hemoglobin-H disease in association with multiple congenital abnormalities. Clin Pediatr (Phila) 1970 Jul;9(7):432–435. doi: 10.1177/000992287000900716. [DOI] [PubMed] [Google Scholar]
  4. Bowcock A. M., van Tonder S., Jenkins T. The haemoglobin H disease mental retardation syndrome: molecular studies on the South African case. Br J Haematol. 1984 Jan;56(1):69–78. doi: 10.1111/j.1365-2141.1984.tb01272.x. [DOI] [PubMed] [Google Scholar]
  5. Breuning M. H., Madan K., Verjaal M., Wijnen J. T., Meera Khan P., Pearson P. L. Human alpha-globin maps to pter-p13.3 in chromosome 16 distal to PGP. Hum Genet. 1987 Jul;76(3):287–289. doi: 10.1007/BF00283625. [DOI] [PubMed] [Google Scholar]
  6. Buckle V. J., Higgs D. R., Wilkie A. O., Super M., Weatherall D. J. Localisation of human alpha globin to 16p13.3----pter. J Med Genet. 1988 Dec;25(12):847–849. doi: 10.1136/jmg.25.12.847. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Church G. M., Gilbert W. Genomic sequencing. Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991–1995. doi: 10.1073/pnas.81.7.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Cross S. H., Allshire R. C., McKay S. J., McGill N. I., Cooke H. J. Cloning of human telomeres by complementation in yeast. Nature. 1989 Apr 27;338(6218):771–774. doi: 10.1038/338771a0. [DOI] [PubMed] [Google Scholar]
  9. Deisseroth A., Hendrick D. Human alpha-globin gene expression following chromosomal dependent gene transfer into mouse erythroleukemia cells. Cell. 1978 Sep;15(1):55–63. doi: 10.1016/0092-8674(78)90082-x. [DOI] [PubMed] [Google Scholar]
  10. Dobyns W. B., Curry C. J., Hoyme H. E., Turlington L., Ledbetter D. H. Clinical and molecular diagnosis of Miller-Dieker syndrome. Am J Hum Genet. 1991 Mar;48(3):584–594. [PMC free article] [PubMed] [Google Scholar]
  11. Dobyns W. B., Stratton R. F., Greenberg F. Syndromes with lissencephaly. I: Miller-Dieker and Norman-Roberts syndromes and isolated lissencephaly. Am J Med Genet. 1984 Jul;18(3):509–526. doi: 10.1002/ajmg.1320180320. [DOI] [PubMed] [Google Scholar]
  12. Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
  13. Germino G. G., Barton N. J., Lamb J., Higgs D. R., Harris P., Xiao G. H., Scherer G., Nakamura Y., Reeders S. T. Identification of a locus which shows no genetic recombination with the autosomal dominant polycystic kidney disease gene on chromosome 16. Am J Hum Genet. 1990 May;46(5):925–933. [PMC free article] [PubMed] [Google Scholar]
  14. Harrington L. A., Greider C. W. Telomerase primer specificity and chromosome healing. Nature. 1991 Oct 3;353(6343):451–454. doi: 10.1038/353451a0. [DOI] [PubMed] [Google Scholar]
  15. Harris P. C., Barton N. J., Higgs D. R., Reeders S. T., Wilkie A. O. A long-range restriction map between the alpha-globin complex and a marker closely linked to the polycystic kidney disease 1 (PKD1) locus. Genomics. 1990 Jun;7(2):195–206. doi: 10.1016/0888-7543(90)90541-2. [DOI] [PubMed] [Google Scholar]
  16. Higgs D. R., Vickers M. A., Wilkie A. O., Pretorius I. M., Jarman A. P., Weatherall D. J. A review of the molecular genetics of the human alpha-globin gene cluster. Blood. 1989 Apr;73(5):1081–1104. [PubMed] [Google Scholar]
  17. Higuchi R. G., Ochman H. Production of single-stranded DNA templates by exonuclease digestion following the polymerase chain reaction. Nucleic Acids Res. 1989 Jul 25;17(14):5865–5865. doi: 10.1093/nar/17.14.5865. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Jarman A. P., Higgs D. R. A new hypervariable marker for the human alpha-globin gene cluster. Am J Hum Genet. 1988 Sep;43(3):249–256. [PMC free article] [PubMed] [Google Scholar]
  19. Jarman A. P., Nicholls R. D., Weatherall D. J., Clegg J. B., Higgs D. R. Molecular characterisation of a hypervariable region downstream of the human alpha-globin gene cluster. EMBO J. 1986 Aug;5(8):1857–1863. doi: 10.1002/j.1460-2075.1986.tb04437.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Lamb J., Wilkie A. O., Harris P. C., Buckle V. J., Lindenbaum R. H., Barton N. J., Reeders S. T., Weatherall D. J., Higgs D. R. Detection of breakpoints in submicroscopic chromosomal translocation, illustrating an important mechanism for genetic disease. Lancet. 1989 Oct 7;2(8667):819–824. doi: 10.1016/s0140-6736(89)92995-4. [DOI] [PubMed] [Google Scholar]
  21. Lindsay S., Bird A. P. Use of restriction enzymes to detect potential gene sequences in mammalian DNA. 1987 May 28-Jun 3Nature. 327(6120):336–338. doi: 10.1038/327336a0. [DOI] [PubMed] [Google Scholar]
  22. Lurie I. W., Lazjuk G. I., Ussova Y. I., Presman E. B., Gurevich D. B. The Wolf-Hirschhorn syndrome. I. Genetics. Clin Genet. 1980 Jun;17(6):375–384. doi: 10.1111/j.1399-0004.1980.tb00167.x. [DOI] [PubMed] [Google Scholar]
  23. Morin G. B. The human telomere terminal transferase enzyme is a ribonucleoprotein that synthesizes TTAGGG repeats. Cell. 1989 Nov 3;59(3):521–529. doi: 10.1016/0092-8674(89)90035-4. [DOI] [PubMed] [Google Scholar]
  24. Moyzis R. K., Buckingham J. M., Cram L. S., Dani M., Deaven L. L., Jones M. D., Meyne J., Ratliff R. L., Wu J. R. A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes. Proc Natl Acad Sci U S A. 1988 Sep;85(18):6622–6626. doi: 10.1073/pnas.85.18.6622. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Villegas A., Calero F., Vickers M. A., Ayyub H., Higgs D. R. Alpha thalassaemia in two Spanish families. Eur J Haematol. 1990 Feb;44(2):109–115. [PubMed] [Google Scholar]
  27. Vyas P., Vickers M. A., Simmons D. L., Ayyub H., Craddock C. F., Higgs D. R. Cis-acting sequences regulating expression of the human alpha-globin cluster lie within constitutively open chromatin. Cell. 1992 May 29;69(5):781–793. doi: 10.1016/0092-8674(92)90290-s. [DOI] [PubMed] [Google Scholar]
  28. Wilkie A. O., Buckle V. J., Harris P. C., Lamb J., Barton N. J., Reeders S. T., Lindenbaum R. H., Nicholls R. D., Barrow M., Bethlenfalvay N. C. Clinical features and molecular analysis of the alpha thalassemia/mental retardation syndromes. I. Cases due to deletions involving chromosome band 16p13.3. Am J Hum Genet. 1990 Jun;46(6):1112–1126. [PMC free article] [PubMed] [Google Scholar]
  29. Wilkie A. O., Higgs D. R., Rack K. A., Buckle V. J., Spurr N. K., Fischel-Ghodsian N., Ceccherini I., Brown W. R., Harris P. C. Stable length polymorphism of up to 260 kb at the tip of the short arm of human chromosome 16. Cell. 1991 Feb 8;64(3):595–606. doi: 10.1016/0092-8674(91)90243-r. [DOI] [PubMed] [Google Scholar]
  30. Wilkie A. O., Lamb J., Harris P. C., Finney R. D., Higgs D. R. A truncated human chromosome 16 associated with alpha thalassaemia is stabilized by addition of telomeric repeat (TTAGGG)n. Nature. 1990 Aug 30;346(6287):868–871. doi: 10.1038/346868a0. [DOI] [PubMed] [Google Scholar]
  31. Zeitlin H. C., Weatherall D. J. Selective expression within the human alpha globin gene complex following chromosome-dependent transfer into diploid mouse erythroleukaemia cells. Mol Biol Med. 1983 Dec;1(5):489–500. [PubMed] [Google Scholar]

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