Abstract
As more coding loci for functional human genes are described, there is a growing need to identify DNA polymorphisms in specific genes. By examining DNA sequences within the introns of the beta 1 subunit of the gamma-aminobutyric acid receptor gene, GABARB1, we found a tetranucleotide repeat sequence (GATA). Amplification of this region by using PCR revealed seven alleles and a high degree of polymorphism (PIC = .75) in human populations. DNAs from the CEPH families were typed for the GABARB1 intron polymorphism and were analyzed with respect to 20 linked markers on chromosome 4. The results permit placement of GABARB1 on the linkage map of chromosome 4, between D4S104 and ALB. These results affirm that sequence analysis of noncoding segments included within or adjacent to functional genes has value as a strategy to detect highly informative polymorphisms.
Full text
PDFImages in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Boylan K. B., Ayres T. M., Popko B., Takahashi N., Hood L. E., Prusiner S. B. Repetitive DNA (TGGA)n 5' to the human myelin basic protein gene: a new form of oligonucleotide repetitive sequence showing length polymorphism. Genomics. 1990 Jan;6(1):16–22. doi: 10.1016/0888-7543(90)90443-x. [DOI] [PubMed] [Google Scholar]
- Buckle V. J., Fujita N., Ryder-Cook A. S., Derry J. M., Barnard P. J., Lebo R. V., Schofield P. R., Seeburg P. H., Bateson A. N., Darlison M. G. Chromosomal localization of GABAA receptor subunit genes: relationship to human genetic disease. Neuron. 1989 Nov;3(5):647–654. doi: 10.1016/0896-6273(89)90275-4. [DOI] [PubMed] [Google Scholar]
- Dausset J., Cann H., Cohen D., Lathrop M., Lalouel J. M., White R. Centre d'etude du polymorphisme humain (CEPH): collaborative genetic mapping of the human genome. Genomics. 1990 Mar;6(3):575–577. doi: 10.1016/0888-7543(90)90491-c. [DOI] [PubMed] [Google Scholar]
- Gilliam T. C., Tanzi R. E., Haines J. L., Bonner T. I., Faryniarz A. G., Hobbs W. J., MacDonald M. E., Cheng S. V., Folstein S. E., Conneally P. M. Localization of the Huntington's disease gene to a small segment of chromosome 4 flanked by D4S10 and the telomere. Cell. 1987 Aug 14;50(4):565–571. doi: 10.1016/0092-8674(87)90029-8. [DOI] [PubMed] [Google Scholar]
- Henikoff S., Eghtedarzadeh M. K. Conserved arrangement of nested genes at the Drosophila Gart locus. Genetics. 1987 Dec;117(4):711–725. doi: 10.1093/genetics/117.4.711. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lander E. S., Green P., Abrahamson J., Barlow A., Daly M. J., Lincoln S. E., Newberg L. A., Newburg L. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics. 1987 Oct;1(2):174–181. doi: 10.1016/0888-7543(87)90010-3. [DOI] [PubMed] [Google Scholar]
- Levitan E. S., Schofield P. R., Burt D. R., Rhee L. M., Wisden W., Köhler M., Fujita N., Rodriguez H. F., Stephenson A., Darlison M. G. Structural and functional basis for GABAA receptor heterogeneity. Nature. 1988 Sep 1;335(6185):76–79. doi: 10.1038/335076a0. [DOI] [PubMed] [Google Scholar]
- Litt M., Luty J. A. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet. 1989 Mar;44(3):397–401. [PMC free article] [PubMed] [Google Scholar]
- Lüddens H., Pritchett D. B., Köhler M., Killisch I., Keinänen K., Monyer H., Sprengel R., Seeburg P. H. Cerebellar GABAA receptor selective for a behavioural alcohol antagonist. Nature. 1990 Aug 16;346(6285):648–651. doi: 10.1038/346648a0. [DOI] [PubMed] [Google Scholar]
- Olsen R. W., Tobin A. J. Molecular biology of GABAA receptors. FASEB J. 1990 Mar;4(5):1469–1480. doi: 10.1096/fasebj.4.5.2155149. [DOI] [PubMed] [Google Scholar]
- Polymeropoulos M. H., Rath D. S., Xiao H., Merril C. R. Trinucleotide repeat polymorphism at the human intestinal fatty acid binding protein gene (FABP2). Nucleic Acids Res. 1990 Dec 11;18(23):7198–7198. doi: 10.1093/nar/18.23.7198-a. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pritchett D. B., Sontheimer H., Shivers B. D., Ymer S., Kettenmann H., Schofield P. R., Seeburg P. H. Importance of a novel GABAA receptor subunit for benzodiazepine pharmacology. Nature. 1989 Apr 13;338(6216):582–585. doi: 10.1038/338582a0. [DOI] [PubMed] [Google Scholar]
- Schofield P. R., Darlison M. G., Fujita N., Burt D. R., Stephenson F. A., Rodriguez H., Rhee L. M., Ramachandran J., Reale V., Glencorse T. A. Sequence and functional expression of the GABA A receptor shows a ligand-gated receptor super-family. Nature. 1987 Jul 16;328(6127):221–227. doi: 10.1038/328221a0. [DOI] [PubMed] [Google Scholar]
- Schofield P. R., Pritchett D. B., Sontheimer H., Kettenmann H., Seeburg P. H. Sequence and expression of human GABAA receptor alpha 1 and beta 1 subunits. FEBS Lett. 1989 Feb 27;244(2):361–364. doi: 10.1016/0014-5793(89)80563-0. [DOI] [PubMed] [Google Scholar]
- Sommer B., Poustka A., Spurr N. K., Seeburg P. H. The murine GABAA receptor delta-subunit gene: structure and assignment to human chromosome 1. DNA Cell Biol. 1990 Oct;9(8):561–568. doi: 10.1089/dna.1990.9.561. [DOI] [PubMed] [Google Scholar]
- Stephenson F. A. Understanding the GABAA receptor: a chemically gated ion channel. Biochem J. 1988 Jan 1;249(1):21–32. doi: 10.1042/bj2490021. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Suzdak P. D., Glowa J. R., Crawley J. N., Schwartz R. D., Skolnick P., Paul S. M. A selective imidazobenzodiazepine antagonist of ethanol in the rat. Science. 1986 Dec 5;234(4781):1243–1247. doi: 10.1126/science.3022383. [DOI] [PubMed] [Google Scholar]
- Weber J. L., May P. E. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet. 1989 Mar;44(3):388–396. [PMC free article] [PubMed] [Google Scholar]
- Ymer S., Schofield P. R., Draguhn A., Werner P., Köhler M., Seeburg P. H. GABAA receptor beta subunit heterogeneity: functional expression of cloned cDNAs. EMBO J. 1989 Jun;8(6):1665–1670. doi: 10.1002/j.1460-2075.1989.tb03557.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zuliani G., Hobbs H. H. Tetranucleotide repeat polymorphism in the apolipoprotein C-III gene. Nucleic Acids Res. 1990 Jul 25;18(14):4299–4299. [PMC free article] [PubMed] [Google Scholar]
- van Amstel H. K., Reitsma P. H. Tetranucleotide repeat polymorphism in the vWF gene. Nucleic Acids Res. 1990 Aug 25;18(16):4957–4957. doi: 10.1093/nar/18.16.4957-a. [DOI] [PMC free article] [PubMed] [Google Scholar]