Skip to main content
Applied and Environmental Microbiology logoLink to Applied and Environmental Microbiology
. 1997 Apr;63(4):1274–1283. doi: 10.1128/aem.63.4.1274-1283.1997

Phenotypic and genetic characterization of the bacteriophage abortive infection mechanism AbiK from Lactococcus lactis.

E Emond 1, B J Holler 1, I Boucher 1, P A Vandenbergh 1, E R Vedamuthu 1, J K Kondo 1, S Moineau 1
PMCID: PMC168421  PMID: 9097424

Abstract

The natural plasmid pSRQ800 isolated from Lactococcus lactis subsp. lactis W1 conferred strong phage resistance against small isometric phages of the 936 and P335 species when introduced into phage-sensitive L. lactis strains. It had very limited effect on prolate phages of the c2 species. The phage resistance mechanism encoded on pSRQ800 is a temperature-sensitive abortive infection system (Abi). Plasmid pSRQ800 was mapped, and the Abi genetic determinant was localized on a 4.5-kb EcoRI fragment. Cloning and sequencing of the 4.5-kb fragment allowed the identification of two large open reading frames. Deletion mutants showed that only orf1 was needed to produce the Abi phenotype. orf1 (renamed abiK) coded for a predicted protein of 599 amino acids (AbiK) with an estimated molecular size of 71.4 kDa and a pI of 7.98. DNA and protein sequence alignment programs found no significant homology with databases. However, a database query based on amino acid composition suggested that AbiK might be in the same protein family as AbiA. No phage DNA replication nor phage structural protein production was detected in infected AbiK+ L. lactis cells. This system is believed to act at or prior to phage DNA replication. WHen cloned into a high-copy vector, AbiK efficiency increased 100-fold. AbiK provides another powerful tool that can be useful in controlling phages during lactococcal fermentations.

Full Text

The Full Text of this article is available as a PDF (466.4 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Alatossava T., Klaenhammer T. R. Molecular Characterization of Three Small Isometric-Headed Bacteriophages Which Vary in Their Sensitivity to the Lactococcal Phage Resistance Plasmid pTR2030. Appl Environ Microbiol. 1991 May;57(5):1346–1353. doi: 10.1128/aem.57.5.1346-1353.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Anba J., Bidnenko E., Hillier A., Ehrlich D., Chopin M. C. Characterization of the lactococcal abiD1 gene coding for phage abortive infection. J Bacteriol. 1995 Jul;177(13):3818–3823. doi: 10.1128/jb.177.13.3818-3823.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Behnke D., Malke H. Bacteriophage interference in Streptococcus pyogenes. I. Characterization of prophage--host systems interfering with the virulent phage A25. Virology. 1978 Mar;85(1):118–128. doi: 10.1016/0042-6822(78)90416-6. [DOI] [PubMed] [Google Scholar]
  4. Bidnenko E., Ehrlich D., Chopin M. C. Phage operon involved in sensitivity to the Lactococcus lactis abortive infection mechanism AbiD1. J Bacteriol. 1995 Jul;177(13):3824–3829. doi: 10.1128/jb.177.13.3824-3829.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Casey J., Daly C., Fitzgerald G. F. Controlled Integration into the Lactococcus Chromosome of the pCI829-Encoded Abortive Infection Gene from Lactococcus lactis subsp. lactis UC811. Appl Environ Microbiol. 1992 Oct;58(10):3283–3291. doi: 10.1128/aem.58.10.3283-3291.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Cluzel P. J., Chopin A., Ehrlich S. D., Chopin M. C. Phage abortive infection mechanism from Lactococcus lactis subsp. lactis, expression of which is mediated by an Iso-ISS1 element. Appl Environ Microbiol. 1991 Dec;57(12):3547–3551. doi: 10.1128/aem.57.12.3547-3551.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Dao M. L., Ferretti J. J. Streptococcus-Escherichia coli shuttle vector pSA3 and its use in the cloning of streptococcal genes. Appl Environ Microbiol. 1985 Jan;49(1):115–119. doi: 10.1128/aem.49.1.115-119.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Dinsmore P. K., Klaenhammer T. R. Phenotypic Consequences of Altering the Copy Number of abiA, a Gene Responsible for Aborting Bacteriophage Infections in Lactococcus lactis. Appl Environ Microbiol. 1994 Apr;60(4):1129–1136. doi: 10.1128/aem.60.4.1129-1136.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Dodd I. B., Egan J. B. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 1990 Sep 11;18(17):5019–5026. doi: 10.1093/nar/18.17.5019. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Durmaz E., Higgins D. L., Klaenhammer T. R. Molecular characterization of a second abortive phage resistance gene present in Lactococcus lactis subsp. lactis ME2. J Bacteriol. 1992 Nov;174(22):7463–7469. doi: 10.1128/jb.174.22.7463-7469.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Durmaz E., Klaenhammer T. R. A Starter Culture Rotation Strategy Incorporating Paired Restriction/ Modification and Abortive Infection Bacteriophage Defenses in a Single Lactococcus lactis Strain. Appl Environ Microbiol. 1995 Apr;61(4):1266–1273. doi: 10.1128/aem.61.4.1266-1273.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Freier S. M., Kierzek R., Jaeger J. A., Sugimoto N., Caruthers M. H., Neilson T., Turner D. H. Improved free-energy parameters for predictions of RNA duplex stability. Proc Natl Acad Sci U S A. 1986 Dec;83(24):9373–9377. doi: 10.1073/pnas.83.24.9373. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. García L. R., Molineux I. J. Incomplete entry of bacteriophage T7 DNA into F plasmid-containing Escherichia coli. J Bacteriol. 1995 Jul;177(14):4077–4083. doi: 10.1128/jb.177.14.4077-4083.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Garvey P., Fitzgerald G. F., Hill C. Cloning and DNA sequence analysis of two abortive infection phage resistance determinants from the lactococcal plasmid pNP40. Appl Environ Microbiol. 1995 Dec;61(12):4321–4328. doi: 10.1128/aem.61.12.4321-4328.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Garvey P., Hill C., Fitzgerald G. F. The Lactococcal Plasmid pNP40 Encodes a Third Bacteriophage Resistance Mechanism, One Which Affects Phage DNA Penetration. Appl Environ Microbiol. 1996 Feb;62(2):676–679. doi: 10.1128/aem.62.2.676-679.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Gonzalez C. F., Kunka B. S. Plasmid transfer in Pediococcus spp.: intergeneric and intrageneric transfer of pIP501. Appl Environ Microbiol. 1983 Jul;46(1):81–89. doi: 10.1128/aem.46.1.81-89.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Harley C. B., Reynolds R. P. Analysis of E. coli promoter sequences. Nucleic Acids Res. 1987 Mar 11;15(5):2343–2361. doi: 10.1093/nar/15.5.2343. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Hill C., Massey I. J., Klaenhammer T. R. Rapid method to characterize lactococcal bacteriophage genomes. Appl Environ Microbiol. 1991 Jan;57(1):283–288. doi: 10.1128/aem.57.1.283-288.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Hill C., Miller L. A., Klaenhammer T. R. Nucleotide sequence and distribution of the pTR2030 resistance determinant (hsp) which aborts bacteriophage infection in lactococci. Appl Environ Microbiol. 1990 Jul;56(7):2255–2258. doi: 10.1128/aem.56.7.2255-2258.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Hobohm U., Sander C. A sequence property approach to searching protein databases. J Mol Biol. 1995 Aug 18;251(3):390–399. doi: 10.1006/jmbi.1995.0442. [DOI] [PubMed] [Google Scholar]
  22. Holo H., Nes I. F. High-Frequency Transformation, by Electroporation, of Lactococcus lactis subsp. cremoris Grown with Glycine in Osmotically Stabilized Media. Appl Environ Microbiol. 1989 Dec;55(12):3119–3123. doi: 10.1128/aem.55.12.3119-3123.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Jarvis A. W., Fitzgerald G. F., Mata M., Mercenier A., Neve H., Powell I. B., Ronda C., Saxelin M., Teuber M. Species and type phages of lactococcal bacteriophages. Intervirology. 1991;32(1):2–9. doi: 10.1159/000150179. [DOI] [PubMed] [Google Scholar]
  24. Jarvis A. W. Serological studies of a host range mutant of a lactic streptococcal bacteriophage. Appl Environ Microbiol. 1978 Dec;36(6):785–789. doi: 10.1128/aem.36.6.785-789.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Ludwig W., Seewaldt E., Kilpper-Bälz R., Schleifer K. H., Magrum L., Woese C. R., Fox G. E., Stackebrandt E. The phylogenetic position of Streptococcus and Enterococcus. J Gen Microbiol. 1985 Mar;131(3):543–551. doi: 10.1099/00221287-131-3-543. [DOI] [PubMed] [Google Scholar]
  26. McKay L. L., Baldwin K. A., Zottola E. A. Loss of lactose metabolism in lactic streptococci. Appl Microbiol. 1972 Jun;23(6):1090–1096. doi: 10.1128/am.23.6.1090-1096.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. McLandsborough L. A., Kolaetis K. M., Requena T., McKay L. L. Cloning and characterization of the abortive infection genetic determinant abiD isolated from pBF61 of Lactococcus lactis subsp. lactis KR5. Appl Environ Microbiol. 1995 May;61(5):2023–2026. doi: 10.1128/aem.61.5.2023-2026.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Moineau S., Bernier D., Jobin M., Hébert J., Klaenhammer T. R., Pandian S. Production of Monoclonal Antibodies against the Major Capsid Protein of the Lactococcus Bacteriophage ul36 and Development of an Enzyme-Linked Immunosorbent Assay for Direct Phage Detection in Whey and Milk. Appl Environ Microbiol. 1993 Jul;59(7):2034–2040. doi: 10.1128/aem.59.7.2034-2040.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Moineau S., Durmaz E., Pandian S., Klaenhammer T. R. Differentiation of Two Abortive Mechanisms by Using Monoclonal Antibodies Directed toward Lactococcal Bacteriophage Capsid Proteins. Appl Environ Microbiol. 1993 Jan;59(1):208–212. doi: 10.1128/aem.59.1.208-212.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Moineau S., Pandian S., Klaenhammer T. R. Evolution of a Lytic Bacteriophage via DNA Acquisition from the Lactococcus lactis Chromosome. Appl Environ Microbiol. 1994 Jun;60(6):1832–1841. doi: 10.1128/aem.60.6.1832-1841.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Moineau S., Pandian S., Klaenhammer T. R. Restriction/Modification systems and restriction endonucleases are more effective on lactococcal bacteriophages that have emerged recently in the dairy industry. Appl Environ Microbiol. 1993 Jan;59(1):197–202. doi: 10.1128/aem.59.1.197-202.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Moineau S., Walker S. A., Vedamuthu E. R., Vandenbergh P. A. Cloning and sequencing of LlaDCHI [corrected] restriction/modification genes from Lactococcus lactis and relatedness of this system to the Streptococcus pneumoniae DpnII system. Appl Environ Microbiol. 1995 Jun;61(6):2193–2202. doi: 10.1128/aem.61.6.2193-2202.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Molineux I. J. Host-parasite interactions: recent developments in the genetics of abortive phage infections. New Biol. 1991 Mar;3(3):230–236. [PubMed] [Google Scholar]
  34. Moran C. P., Jr, Lang N., LeGrice S. F., Lee G., Stephens M., Sonenshein A. L., Pero J., Losick R. Nucleotide sequences that signal the initiation of transcription and translation in Bacillus subtilis. Mol Gen Genet. 1982;186(3):339–346. doi: 10.1007/BF00729452. [DOI] [PubMed] [Google Scholar]
  35. O'Connor L., Coffey A., Daly C., Fitzgerald G. F. AbiG, a genotypically novel abortive infection mechanism encoded by plasmid pCI750 of Lactococcus lactis subsp. cremoris UC653. Appl Environ Microbiol. 1996 Sep;62(9):3075–3082. doi: 10.1128/aem.62.9.3075-3082.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. O'Sullivan D. J., Zagula K., Klaenhammer T. R. In vivo restriction by LlaI is encoded by three genes, arranged in an operon with llaIM, on the conjugative Lactococcus plasmid pTR2030. J Bacteriol. 1995 Jan;177(1):134–143. doi: 10.1128/jb.177.1.134-143.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. O'sullivan D. J., Klaenhammer T. R. Rapid Mini-Prep Isolation of High-Quality Plasmid DNA from Lactococcus and Lactobacillus spp. Appl Environ Microbiol. 1993 Aug;59(8):2730–2733. doi: 10.1128/aem.59.8.2730-2733.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Parreira R., Ehrlich S. D., Chopin M. C. Dramatic decay of phage transcripts in lactococcal cells carrying the abortive infection determinant AbiB. Mol Microbiol. 1996 Jan;19(2):221–230. doi: 10.1046/j.1365-2958.1996.371896.x. [DOI] [PubMed] [Google Scholar]
  39. Prévots F., Daloyau M., Bonin O., Dumont X., Tolou S. Cloning and sequencing of the novel abortive infection gene abiH of Lactococcus lactis ssp. lactis biovar. diacetylactis S94. FEMS Microbiol Lett. 1996 Sep 1;142(2-3):295–299. doi: 10.1111/j.1574-6968.1996.tb08446.x. [DOI] [PubMed] [Google Scholar]
  40. Rotman G. S., Cooney R., Malamy M. H. Cloning of the pif region of the F sex factor and identification of a pif protein product. J Bacteriol. 1983 Jul;155(1):254–264. doi: 10.1128/jb.155.1.254-264.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  41. Sanders M. E., Klaenhammer T. R. Restriction and modification in group N streptococci: effect of heat on development of modified lytic bacteriophage. Appl Environ Microbiol. 1980 Sep;40(3):500–506. doi: 10.1128/aem.40.3.500-506.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Sanders M. E., Leonhard P. J., Sing W. D., Klaenhammer T. R. Conjugal strategy for construction of fast Acid-producing, bacteriophage-resistant lactic streptococci for use in dairy fermentations. Appl Environ Microbiol. 1986 Nov;52(5):1001–1007. doi: 10.1128/aem.52.5.1001-1007.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Sing W. D., Klaenhammer T. R. A strategy for rotation of different bacteriophage defenses in a lactococcal single-strain starter culture system. Appl Environ Microbiol. 1993 Feb;59(2):365–372. doi: 10.1128/aem.59.2.365-372.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Snyder L. Phage-exclusion enzymes: a bonanza of biochemical and cell biology reagents? Mol Microbiol. 1995 Feb;15(3):415–420. doi: 10.1111/j.1365-2958.1995.tb02255.x. [DOI] [PubMed] [Google Scholar]
  45. Terzaghi B. E., Sandine W. E. Improved medium for lactic streptococci and their bacteriophages. Appl Microbiol. 1975 Jun;29(6):807–813. doi: 10.1128/am.29.6.807-813.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Van Eldere J., Brophy L., Loynds B., Celis P., Hancock I., Carman S., Kroll J. S., Moxon E. R. Region II of the Haemophilus influenzae type be capsulation locus is involved in serotype-specific polysaccharide synthesis. Mol Microbiol. 1995 Jan;15(1):107–118. doi: 10.1111/j.1365-2958.1995.tb02225.x. [DOI] [PubMed] [Google Scholar]
  47. Waterfield N. R., Le Page R. W., Wilson P. W., Wells J. M. The isolation of lactococcal promoters and their use in investigating bacterial luciferase synthesis in Lactococcus lactis. Gene. 1995 Nov 7;165(1):9–15. doi: 10.1016/0378-1119(95)00484-n. [DOI] [PubMed] [Google Scholar]
  48. Wells J. M., Wilson P. W., Le Page R. W. Improved cloning vectors and transformation procedure for Lactococcus lactis. J Appl Bacteriol. 1993 Jun;74(6):629–636. doi: 10.1111/j.1365-2672.1993.tb05195.x. [DOI] [PubMed] [Google Scholar]
  49. Zuker M. Computer prediction of RNA structure. Methods Enzymol. 1989;180:262–288. doi: 10.1016/0076-6879(89)80106-5. [DOI] [PubMed] [Google Scholar]
  50. van de Guchte M., Kok J., Venema G. Gene expression in Lactococcus lactis. FEMS Microbiol Rev. 1992 Feb;8(2):73–92. doi: 10.1111/j.1574-6968.1992.tb04958.x. [DOI] [PubMed] [Google Scholar]

Articles from Applied and Environmental Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES